Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:28:33 (2295170): wrapper (7.7.26015): starting
20:28:33 (2295170): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 20:28:33] Arguments: --nthreads 3
[2025-10-12 20:28:33] Threads: 3
[2025-10-12 20:28:33] Checking for CVMFS
[2025-10-12 20:28:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:28:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:28:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:28:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:28:34] 2.9.2.0 842304 4694 83432 151631 1 57 2632968 36864001 0 130560 0 3806493 99.991 160115 937 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 20:28:34] CVMFS is ok
[2025-10-12 20:28:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:28:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:28:34] Further information can be found at the LHC@home message board.
[2025-10-12 20:28:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:28:34] Checking for apptainer binary...
[2025-10-12 20:28:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:28:34] Running /usr/bin/apptainer --version
[2025-10-12 20:28:34] apptainer version 1.4.1-1.1
[2025-10-12 20:28:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:28:34] thA330a
[2025-10-12 20:28:34] apptainer works
[2025-10-12 20:28:34] Set ATHENA_PROC_NUMBER=3
[2025-10-12 20:28:34] Set ATHENA_CORE_NUMBER=3
[2025-10-12 20:28:34] Starting ATLAS job with PandaID=6840223634
[2025-10-12 20:28:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 21:47:50]  *** The last 200 lines of the pilot log: ***
[2025-10-12 21:47:50] 2025-10-12 19:47:09,004 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 21:47:50] 2025-10-12 19:47:09,004 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 21:47:50] 2025-10-12 19:47:09,004 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 21:47:50] 2025-10-12 19:47:09,004 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 21:47:50] 2025-10-12 19:47:09,004 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 21:47:50] 2025-10-12 19:47:09,004 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 21:47:50] 2025-10-12 19:47:09,004 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 21:47:50] 2025-10-12 19:47:09,004 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 21:47:50] 2025-10-12 19:47:09,004 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 21:47:50] 2025-10-12 19:47:09,004 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 21:47:50] 2025-10-12 19:47:09,004 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 21:47:50] 2025-10-12 19:47:09,004 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 21:47:50] 2025-10-12 19:47:09,004 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 21:47:50] 2025-10-12 19:47:09,004 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 21:47:50] 2025-10-12 19:47:09,004 | INFO     | job 6840223634 has completed (purged errors)
[2025-10-12 21:47:50] 2025-10-12 19:47:09,004 | INFO     | overall cleanup function is called
[2025-10-12 21:47:50] 2025-10-12 19:47:09,665 | INFO     | PID=2298885 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 21:47:50] 2025-10-12 19:47:10,010 | INFO     | --- collectZombieJob: --- 10, [2305324]
[2025-10-12 21:47:50] 2025-10-12 19:47:10,010 | INFO     | zombie collector waiting for pid 2305324
[2025-10-12 21:47:50] 2025-10-12 19:47:10,010 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 21:47:50] 2025-10-12 19:47:10,010 | INFO     | collected zombie processes
[2025-10-12 21:47:50] 2025-10-12 19:47:10,010 | INFO     | will attempt to kill all subprocesses of pid=2305324
[2025-10-12 21:47:50] 2025-10-12 19:47:10,057 | INFO     | process IDs to be killed: [2305324] (in reverse order)
[2025-10-12 21:47:50] 2025-10-12 19:47:10,083 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 21:47:50] 2025-10-12 19:47:10,083 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 21:47:50] 2025-10-12 19:47:10,084 | INFO     | did not find any defunct processes belonging to 2305324
[2025-10-12 21:47:50] 2025-10-12 19:47:10,085 | INFO     | did not find any defunct processes belonging to 2305324
[2025-10-12 21:47:50] 2025-10-12 19:47:10,085 | INFO     | ready for new job
[2025-10-12 21:47:50] 2025-10-12 19:47:10,085 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 21:47:50] 2025-10-12 19:47:10,086 | INFO     | ***************************************
[2025-10-12 21:47:50] 2025-10-12 19:47:10,086 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 21:47:50] 2025-10-12 19:47:10,086 | INFO     | ***************************************
[2025-10-12 21:47:50] 2025-10-12 19:47:10,086 | INFO     | 
[2025-10-12 21:47:50] 2025-10-12 19:47:10,087 | INFO     | architecture information:
[2025-10-12 21:47:50] 2025-10-12 19:47:10,087 | INFO     | executing command: cat /etc/os-release
[2025-10-12 21:47:50] 2025-10-12 19:47:10,096 | INFO     | cat /etc/os-release:
[2025-10-12 21:47:50] NAME="CentOS Linux"
[2025-10-12 21:47:50] VERSION="7 (Core)"
[2025-10-12 21:47:50] ID="centos"
[2025-10-12 21:47:50] ID_LIKE="rhel fedora"
[2025-10-12 21:47:50] VERSION_ID="7"
[2025-10-12 21:47:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 21:47:50] ANSI_COLOR="0;31"
[2025-10-12 21:47:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 21:47:50] HOME_URL="https://www.centos.org/"
[2025-10-12 21:47:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 21:47:50] 
[2025-10-12 21:47:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 21:47:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 21:47:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 21:47:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 21:47:50] 
[2025-10-12 21:47:50] 2025-10-12 19:47:10,096 | INFO     | ***************************************
[2025-10-12 21:47:50] 2025-10-12 19:47:10,599 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 21:47:50] 2025-10-12 19:47:10,612 | INFO     | sufficient remaining disk space (259114663936 B)
[2025-10-12 21:47:50] 2025-10-12 19:47:10,612 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 21:47:50] 2025-10-12 19:47:10,612 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 21:47:50] 2025-10-12 19:47:10,612 | INFO     | update_server=False
[2025-10-12 21:47:50] 2025-10-12 19:47:10,612 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 21:47:50] 2025-10-12 19:47:10,612 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 21:47:50] 2025-10-12 19:47:10,613 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:47:50] 2025-10-12 19:47:10,613 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 21:47:50] 2025-10-12 19:47:10,613 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 21:47:50] 2025-10-12 19:47:10,613 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 21:47:50] 2025-10-12 19:47:10,653 | INFO     | all data control threads have been joined
[2025-10-12 21:47:50] 2025-10-12 19:47:10,659 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 21:47:50] 2025-10-12 19:47:10,660 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 21:47:50] 2025-10-12 19:47:10,660 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 21:47:50] 2025-10-12 19:47:10,660 | INFO     | will abort loop
[2025-10-12 21:47:50] 2025-10-12 19:47:11,614 | INFO     | [job] retrieve thread has finished
[2025-10-12 21:47:50] 2025-10-12 19:47:11,614 | INFO     | [job] queue monitor thread has finished
[2025-10-12 21:47:50] 2025-10-12 19:47:11,658 | INFO     | [data] control thread has finished
[2025-10-12 21:47:50] 2025-10-12 19:47:11,665 | INFO     | [job] job monitor thread has finished
[2025-10-12 21:47:50] 2025-10-12 19:47:11,735 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 21:47:50] 2025-10-12 19:47:11,813 | INFO     | all job control threads have been joined
[2025-10-12 21:47:50] 2025-10-12 19:47:11,829 | INFO     | [payload] failed_post thread has finished
[2025-10-12 21:47:50] 2025-10-12 19:47:12,072 | INFO     | all payload control threads have been joined
[2025-10-12 21:47:50] 2025-10-12 19:47:12,079 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 21:47:50] 2025-10-12 19:47:12,501 | INFO     | [data] copytool_in thread has finished
[2025-10-12 21:47:50] 2025-10-12 19:47:12,806 | INFO     | [payload] validate_post thread has finished
[2025-10-12 21:47:50] 2025-10-12 19:47:12,817 | INFO     | [job] control thread has finished
[2025-10-12 21:47:50] 2025-10-12 19:47:13,078 | INFO     | [payload] control thread has finished
[2025-10-12 21:47:50] 2025-10-12 19:47:13,078 | INFO     | [job] validate thread has finished
[2025-10-12 21:47:50] 2025-10-12 19:47:13,114 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 21:47:50] 2025-10-12 19:47:13,115 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 21:47:50] 2025-10-12 19:47:13,447 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 21:47:50] 2025-10-12 19:47:13,741 | INFO     | [data] copytool_out thread has finished
[2025-10-12 21:47:50] 2025-10-12 19:47:17,455 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 21:47:50] 2025-10-12 19:47:21,069 | INFO     | job.realtimelogging is not enabled
[2025-10-12 21:47:50] 2025-10-12 19:47:22,075 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 21:47:50] 2025-10-12 19:47:45,079 | INFO     | [monitor] cgroup control has ended
[2025-10-12 21:47:50] 2025-10-12 19:47:45,638 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140352339556160)>', '<ExcThread(monitor, started 140351864035072)>']
[2025-10-12 21:47:50] 2025-10-12 19:47:45,792 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 21:47:50] 2025-10-12 19:47:45,792 | INFO     | [monitor] control thread has ended
[2025-10-12 21:47:50] 2025-10-12 19:47:50,663 | INFO     | all workflow threads have been joined
[2025-10-12 21:47:50] 2025-10-12 19:47:50,663 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 21:47:50] 2025-10-12 19:47:50,664 | INFO     | traces error code: 0
[2025-10-12 21:47:50] 2025-10-12 19:47:50,664 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 21:47:50] 2025-10-12 19:47:50,717 [wrapper] ==== pilot stdout END ====
[2025-10-12 21:47:50] 2025-10-12 19:47:50,719 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 21:47:50] 2025-10-12 19:47:50,721 [wrapper] pilotpid: 2298885
[2025-10-12 21:47:50] 2025-10-12 19:47:50,724 [wrapper] Pilot exit status: 0
[2025-10-12 21:47:50] 2025-10-12 19:47:50,731 [wrapper] pandaids: 6840223634
[2025-10-12 21:47:50] 2025-10-12 19:47:50,748 [wrapper] cleanup supervisor_pilot 2317831 2298886
[2025-10-12 21:47:50] 2025-10-12 19:47:50,750 [wrapper] Test setup, not cleaning
[2025-10-12 21:47:50] 2025-10-12 19:47:50,753 [wrapper] apfmon messages muted
[2025-10-12 21:47:50] 2025-10-12 19:47:50,755 [wrapper] ==== wrapper stdout END ====
[2025-10-12 21:47:50] 2025-10-12 19:47:50,757 [wrapper] ==== wrapper stderr END ====
[2025-10-12 21:47:50]  *** Error codes and diagnostics ***
[2025-10-12 21:47:50]     "exeErrorCode": 0,
[2025-10-12 21:47:50]     "exeErrorDiag": "",
[2025-10-12 21:47:50]     "pilotErrorCode": 0,
[2025-10-12 21:47:50]     "pilotErrorDiag": "",
[2025-10-12 21:47:50]  *** Listing of results directory ***
[2025-10-12 21:47:50] total 405792
[2025-10-12 21:47:50] -rw-r--r-- 1 boinc boinc    557409 Oct 12 17:00 pilot3.tar.gz
[2025-10-12 21:47:50] -rwx------ 1 boinc boinc     36292 Oct 12 17:06 runpilot2-wrapper.sh
[2025-10-12 21:47:50] -rw-r--r-- 1 boinc boinc      5112 Oct 12 17:06 queuedata.json
[2025-10-12 21:47:50] -rw-r--r-- 1 boinc boinc       100 Oct 12 20:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 21:47:50] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 20:28 run_atlas
[2025-10-12 21:47:50] -rw-r--r-- 1 boinc boinc       105 Oct 12 20:28 job.xml
[2025-10-12 21:47:50] -rw-r--r-- 2 boinc boinc 219965005 Oct 12 20:28 EVNT.46676267._004552.pool.root.1
[2025-10-12 21:47:50] -rw-r--r-- 2 boinc boinc    569678 Oct 12 20:28 input.tar.gz
[2025-10-12 21:47:50] -rw-r--r-- 2 boinc boinc     15120 Oct 12 20:28 start_atlas.sh
[2025-10-12 21:47:50] drwxrwx--x 2 boinc boinc      4096 Oct 12 20:28 shared
[2025-10-12 21:47:50] -rw-r--r-- 1 boinc boinc         0 Oct 12 20:28 boinc_setup_complete
[2025-10-12 21:47:50] -rw-r--r-- 1 boinc boinc      6439 Oct 12 20:28 init_data.xml
[2025-10-12 21:47:50] -rw-r--r-- 1 boinc boinc         0 Oct 12 20:28 boinc_lockfile
[2025-10-12 21:47:50] -rw-r--r-- 1 boinc boinc      2547 Oct 12 20:28 pandaJob.out
[2025-10-12 21:47:50] -rw------- 1 boinc boinc    975528 Oct 12 20:28 agis_schedconf.cvmfs.json
[2025-10-12 21:47:50] -rw------- 1 boinc boinc   1560580 Oct 12 20:28 agis_ddmendpoints.agis.ALL.json
[2025-10-12 21:47:50] drwx------ 5 boinc boinc      4096 Oct 12 20:28 pilot3
[2025-10-12 21:47:50] -rw------- 1 boinc boinc 189808792 Oct 12 21:46 HITS.46676269._081738.pool.root.1
[2025-10-12 21:47:50] -rw-r--r-- 1 boinc boinc       529 Oct 12 21:46 boinc_task_state.xml
[2025-10-12 21:47:50] -rw------- 1 boinc boinc      1018 Oct 12 21:46 memory_monitor_summary.json
[2025-10-12 21:47:50] -rw------- 1 boinc boinc    235013 Oct 12 21:47 log.46676269._081738.job.log.tgz.1
[2025-10-12 21:47:50] -rw------- 1 boinc boinc        95 Oct 12 21:47 pilot_heartbeat.json
[2025-10-12 21:47:50] -rw------- 1 boinc boinc      7753 Oct 12 21:47 heartbeat.json
[2025-10-12 21:47:50] -rw-r--r-- 1 boinc boinc      8192 Oct 12 21:47 boinc_mmap_file
[2025-10-12 21:47:50] -rw-r--r-- 1 boinc boinc        27 Oct 12 21:47 wrapper_checkpoint.txt
[2025-10-12 21:47:50] -rw------- 1 boinc boinc      4814 Oct 12 21:47 pilotlog.txt
[2025-10-12 21:47:50] -rw------- 1 boinc boinc    694599 Oct 12 21:47 log.46676269._081738.job.log.1
[2025-10-12 21:47:50] -rw------- 1 boinc boinc       357 Oct 12 21:47 output.list
[2025-10-12 21:47:50] -rw-r--r-- 1 boinc boinc       620 Oct 12 21:47 runtime_log
[2025-10-12 21:47:50] -rw------- 1 boinc boinc    952320 Oct 12 21:47 result.tar.gz
[2025-10-12 21:47:50] -rw-r--r-- 1 boinc boinc      8782 Oct 12 21:47 runtime_log.err
[2025-10-12 21:47:50] -rw------- 1 boinc boinc       659 Oct 12 21:47 qrjMDmbpCS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmBOkNDm70wZXm.diag
[2025-10-12 21:47:50] -rw-r--r-- 1 boinc boinc     12714 Oct 12 21:47 stderr.txt
[2025-10-12 21:47:50] HITS file was successfully produced:
[2025-10-12 21:47:50] -rw------- 1 boinc boinc 189808792 Oct 12 21:46 shared/HITS.pool.root.1
[2025-10-12 21:47:50]  *** Contents of shared directory: ***
[2025-10-12 21:47:50] total 401684
[2025-10-12 21:47:50] -rw-r--r-- 2 boinc boinc 219965005 Oct 12 20:28 ATLAS.root_0
[2025-10-12 21:47:50] -rw-r--r-- 2 boinc boinc    569678 Oct 12 20:28 input.tar.gz
[2025-10-12 21:47:50] -rw-r--r-- 2 boinc boinc     15120 Oct 12 20:28 start_atlas.sh
[2025-10-12 21:47:50] -rw------- 1 boinc boinc 189808792 Oct 12 21:46 HITS.pool.root.1
[2025-10-12 21:47:50] -rw------- 1 boinc boinc    952320 Oct 12 21:47 result.tar.gz
21:47:52 (2295170): run_atlas exited; CPU time 13445.365521
21:47:52 (2295170): called boinc_finish(0)

</stderr_txt>
]]>

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