Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:27:11 (19609): wrapper (7.7.26015): starting
14:27:11 (19609): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 14:27:11] Arguments: --nthreads 8
[2025-10-12 14:27:11] Threads: 8
[2025-10-12 14:27:11] Checking for CVMFS
[2025-10-12 14:27:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:27:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:27:12] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:27:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:27:12] 2.11.2.0 8814 53220 114712 151631 2 188 18230532 18432000 1789 130560 0 48219645 99.973 2396888 39929 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 14:27:12] CVMFS is ok
[2025-10-12 14:27:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 14:27:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 14:27:12] Further information can be found at the LHC@home message board.
[2025-10-12 14:27:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:27:12] Checking for apptainer binary...
[2025-10-12 14:27:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:27:12] Running /usr/bin/apptainer --version
[2025-10-12 14:27:12] apptainer version 1.3.2-1.el7
[2025-10-12 14:27:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:27:12] c-206-19.aglt2.org
[2025-10-12 14:27:12] apptainer works
[2025-10-12 14:27:12] Set ATHENA_PROC_NUMBER=8
[2025-10-12 14:27:12] Set ATHENA_CORE_NUMBER=8
[2025-10-12 14:27:12] Starting ATLAS job with PandaID=6840223775
[2025-10-12 14:27:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:32:48]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:32:48] 2025-10-12 21:32:07,596 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:32:48] 2025-10-12 21:32:07,597 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:32:48] 2025-10-12 21:32:07,597 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:32:48] 2025-10-12 21:32:07,602 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:32:48] 2025-10-12 21:32:07,603 | INFO     | sum of square deviations: 1869302025.5
[2025-10-12 17:32:48] 2025-10-12 21:32:07,604 | INFO     | sum of deviations: 12243115043.999998
[2025-10-12 17:32:48] 2025-10-12 21:32:07,604 | INFO     | mean x: 1760299186.5
[2025-10-12 17:32:48] 2025-10-12 21:32:07,605 | INFO     | mean y: 2463816.813186813
[2025-10-12 17:32:48] 2025-10-12 21:32:07,605 | INFO     | -- intersect: -11526730052.44104
[2025-10-12 17:32:48] 2025-10-12 21:32:07,605 | INFO     | intersect: -11526730052.44104
[2025-10-12 17:32:48] 2025-10-12 21:32:07,605 | INFO     | chi2: 1.9555885308749192
[2025-10-12 17:32:48] 2025-10-12 21:32:07,606 | INFO     | sum of square deviations: 1719429448.0
[2025-10-12 17:32:48] 2025-10-12 21:32:07,607 | INFO     | sum of deviations: 23569507326.0
[2025-10-12 17:32:48] 2025-10-12 21:32:07,608 | INFO     | mean x: 1760299034.0
[2025-10-12 17:32:48] 2025-10-12 21:32:07,608 | INFO     | mean y: 2475069.3107344634
[2025-10-12 17:32:48] 2025-10-12 21:32:07,608 | INFO     | -- intersect: -24127262284.014927
[2025-10-12 17:32:48] 2025-10-12 21:32:07,608 | INFO     | intersect: -24127262284.014927
[2025-10-12 17:32:48] 2025-10-12 21:32:07,608 | INFO     | chi2: 1.180193186663761
[2025-10-12 17:32:48] 2025-10-12 21:32:07,609 | INFO     | current chi2=1.180193186663761 (change=39.65022968631601 %)
[2025-10-12 17:32:48] 2025-10-12 21:32:07,609 | INFO     | sum of square deviations: 1577789583.0
[2025-10-12 17:32:48] 2025-10-12 21:32:07,610 | INFO     | sum of deviations: 22655983312.50001
[2025-10-12 17:32:48] 2025-10-12 21:32:07,611 | INFO     | mean x: 1760298881.5
[2025-10-12 17:32:48] 2025-10-12 21:32:07,611 | INFO     | mean y: 2474085.4825581396
[2025-10-12 17:32:48] 2025-10-12 21:32:07,611 | INFO     | -- intersect: -25274218392.38661
[2025-10-12 17:32:48] 2025-10-12 21:32:07,611 | INFO     | intersect: -25274218392.38661
[2025-10-12 17:32:48] 2025-10-12 21:32:07,612 | INFO     | chi2: 1.180960416016999
[2025-10-12 17:32:48] 2025-10-12 21:32:07,612 | INFO     | current chi2=1.180960416016999 (change=-0.0650087936371663 %)
[2025-10-12 17:32:48] 2025-10-12 21:32:07,612 | INFO     | right removable region: 171
[2025-10-12 17:32:48] 2025-10-12 21:32:07,612 | INFO     | sum of square deviations: 1719429448.0
[2025-10-12 17:32:48] 2025-10-12 21:32:07,614 | INFO     | sum of deviations: -10203002129.999998
[2025-10-12 17:32:48] 2025-10-12 21:32:07,614 | INFO     | mean x: 1760299339.0
[2025-10-12 17:32:48] 2025-10-12 21:32:07,614 | INFO     | mean y: 2486354.853107345
[2025-10-12 17:32:48] 2025-10-12 21:32:07,614 | INFO     | -- intersect: 10448008226.160843
[2025-10-12 17:32:48] 2025-10-12 21:32:07,615 | INFO     | intersect: 10448008226.160843
[2025-10-12 17:32:48] 2025-10-12 21:32:07,615 | INFO     | chi2: 0.8206242403628872
[2025-10-12 17:32:48] 2025-10-12 21:32:07,615 | INFO     | current chi2=0.8206242403628872 (change=58.03696803254699 %)
[2025-10-12 17:32:48] 2025-10-12 21:32:07,616 | INFO     | sum of square deviations: 1577789583.0
[2025-10-12 17:32:48] 2025-10-12 21:32:07,617 | INFO     | sum of deviations: -10062391090.999998
[2025-10-12 17:32:48] 2025-10-12 21:32:07,617 | INFO     | mean x: 1760299491.5
[2025-10-12 17:32:48] 2025-10-12 21:32:07,617 | INFO     | mean y: 2486160.8372093025
[2025-10-12 17:32:48] 2025-10-12 21:32:07,618 | INFO     | -- intersect: 11228838591.864399
[2025-10-12 17:32:48] 2025-10-12 21:32:07,618 | INFO     | intersect: 11228838591.864399
[2025-10-12 17:32:48] 2025-10-12 21:32:07,618 | INFO     | chi2: 0.8102577359594584
[2025-10-12 17:32:48] 2025-10-12 21:32:07,618 | INFO     | current chi2=0.8102577359594584 (change=1.2632461842517144 %)
[2025-10-12 17:32:48] 2025-10-12 21:32:07,619 | INFO     | left removable region: 20
[2025-10-12 17:32:48] 2025-10-12 21:32:07,619 | INFO     | sum of square deviations: 1067554900.0
[2025-10-12 17:32:48] 2025-10-12 21:32:07,620 | INFO     | sum of deviations: 4441967418.000002
[2025-10-12 17:32:48] 2025-10-12 21:32:07,620 | INFO     | mean x: 1760299461.0
[2025-10-12 17:32:48] 2025-10-12 21:32:07,620 | INFO     | mean y: 2493712.8344370862
[2025-10-12 17:32:48] 2025-10-12 21:32:07,621 | INFO     | -- intersect: -7321900425.289012
[2025-10-12 17:32:48] 2025-10-12 21:32:07,621 | INFO     | intersect: -7321900425.289012
[2025-10-12 17:32:48] 2025-10-12 21:32:07,621 | INFO     | chi2: 0.0001817332655486582
[2025-10-12 17:32:48] 2025-10-12 21:32:07,621 | INFO     | -- intersect: -7321900425.289012
[2025-10-12 17:32:48] 2025-10-12 21:32:07,622 | INFO     | current memory leak: 4.16 B/s (using 151 data points, chi2=0.00)
[2025-10-12 17:32:48] 2025-10-12 21:32:07,622 | INFO     | could have reported an average CPU frequency of 2474 MHz (10 samples)
[2025-10-12 17:32:48] 2025-10-12 21:32:07,622 | INFO     | ..............................
[2025-10-12 17:32:48] 2025-10-12 21:32:07,623 | INFO     | . Timing measurements:
[2025-10-12 17:32:48] 2025-10-12 21:32:07,623 | INFO     | . get job = 0 s
[2025-10-12 17:32:48] 2025-10-12 21:32:07,623 | INFO     | . initial setup = 2 s
[2025-10-12 17:32:48] 2025-10-12 21:32:07,623 | INFO     | . payload setup = 4 s
[2025-10-12 17:32:48] 2025-10-12 21:32:07,623 | INFO     | . stage-in = 0 s
[2025-10-12 17:32:48] 2025-10-12 21:32:07,623 | INFO     | . payload execution = 11051 s
[2025-10-12 17:32:48] 2025-10-12 21:32:07,624 | INFO     | . stage-out = 2 s
[2025-10-12 17:32:48] 2025-10-12 21:32:07,624 | INFO     | . log creation = 0 s
[2025-10-12 17:32:48] 2025-10-12 21:32:07,624 | INFO     | ..............................
[2025-10-12 17:32:48] 2025-10-12 21:32:07,784 | INFO     | 
[2025-10-12 17:32:48] 2025-10-12 21:32:07,785 | INFO     | job summary report
[2025-10-12 17:32:48] 2025-10-12 21:32:07,785 | INFO     | --------------------------------------------------
[2025-10-12 17:32:48] 2025-10-12 21:32:07,785 | INFO     | PanDA job id: 6840223775
[2025-10-12 17:32:48] 2025-10-12 21:32:07,785 | INFO     | task id: 46676269
[2025-10-12 17:32:48] 2025-10-12 21:32:07,785 | INFO     | errors: (none)
[2025-10-12 17:32:48] 2025-10-12 21:32:07,785 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:32:48] 2025-10-12 21:32:07,786 | INFO     | pilot state: finished 
[2025-10-12 17:32:48] 2025-10-12 21:32:07,786 | INFO     | transexitcode: 0
[2025-10-12 17:32:48] 2025-10-12 21:32:07,786 | INFO     | exeerrorcode: 0
[2025-10-12 17:32:48] 2025-10-12 21:32:07,786 | INFO     | exeerrordiag: 
[2025-10-12 17:32:48] 2025-10-12 21:32:07,786 | INFO     | exitcode: 0
[2025-10-12 17:32:48] 2025-10-12 21:32:07,786 | INFO     | exitmsg: OK
[2025-10-12 17:32:48] 2025-10-12 21:32:07,787 | INFO     | cpuconsumptiontime: 84382 s
[2025-10-12 17:32:48] 2025-10-12 21:32:07,787 | INFO     | nevents: 400
[2025-10-12 17:32:48] 2025-10-12 21:32:07,787 | INFO     | neventsw: 0
[2025-10-12 17:32:48] 2025-10-12 21:32:07,787 | INFO     | pid: 29796
[2025-10-12 17:32:48] 2025-10-12 21:32:07,787 | INFO     | pgrp: 29796
[2025-10-12 17:32:48] 2025-10-12 21:32:07,787 | INFO     | corecount: 8
[2025-10-12 17:32:48] 2025-10-12 21:32:07,787 | INFO     | event service: False
[2025-10-12 17:32:48] 2025-10-12 21:32:07,788 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 11060: 2378421, 11062: 2387419, 11065: 2387475, 11070: 2387797}
[2025-10-12 17:32:48] 2025-10-12 21:32:07,788 | INFO     | --------------------------------------------------
[2025-10-12 17:32:48] 2025-10-12 21:32:07,788 | INFO     | 
[2025-10-12 17:32:48] 2025-10-12 21:32:07,788 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 17:32:48] 2025-10-12 21:32:07,805 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:32:48] 2025-10-12 21:32:07,805 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:32:48] 2025-10-12 21:32:07,805 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:32:48] 2025-10-12 21:32:07,805 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:32:48] 2025-10-12 21:32:07,806 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:32:48] 2025-10-12 21:32:07,806 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:32:48] 2025-10-12 21:32:07,806 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:32:48] 2025-10-12 21:32:07,806 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:32:48] 2025-10-12 21:32:07,806 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:32:48] 2025-10-12 21:32:07,807 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:32:48] 2025-10-12 21:32:07,807 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:32:48] 2025-10-12 21:32:07,807 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:32:48] 2025-10-12 21:32:07,807 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:32:48] 2025-10-12 21:32:07,807 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:32:48] 2025-10-12 21:32:07,807 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:32:48] 2025-10-12 21:32:07,808 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:32:48] 2025-10-12 21:32:07,808 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:32:48] 2025-10-12 21:32:07,808 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:32:48] 2025-10-12 21:32:07,808 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:32:48] 2025-10-12 21:32:07,808 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:32:48] 2025-10-12 21:32:07,809 | INFO     | job 6840223775 has completed (purged errors)
[2025-10-12 17:32:48] 2025-10-12 21:32:07,809 | INFO     | overall cleanup function is called
[2025-10-12 17:32:48] 2025-10-12 21:32:08,817 | INFO     | --- collectZombieJob: --- 10, [29796]
[2025-10-12 17:32:48] 2025-10-12 21:32:08,817 | INFO     | zombie collector waiting for pid 29796
[2025-10-12 17:32:48] 2025-10-12 21:32:08,817 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:32:48] 2025-10-12 21:32:08,817 | INFO     | collected zombie processes
[2025-10-12 17:32:48] 2025-10-12 21:32:08,817 | INFO     | will attempt to kill all subprocesses of pid=29796
[2025-10-12 17:32:48] 2025-10-12 21:32:08,969 | INFO     | process IDs to be killed: [29796] (in reverse order)
[2025-10-12 17:32:48] 2025-10-12 21:32:09,026 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:32:48] 2025-10-12 21:32:09,027 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:32:48] 2025-10-12 21:32:09,033 | INFO     | did not find any defunct processes belonging to 29796
[2025-10-12 17:32:48] 2025-10-12 21:32:09,037 | INFO     | did not find any defunct processes belonging to 29796
[2025-10-12 17:32:48] 2025-10-12 21:32:09,037 | INFO     | ready for new job
[2025-10-12 17:32:48] 2025-10-12 21:32:09,037 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:32:48] 2025-10-12 21:32:09,039 | INFO     | ***************************************
[2025-10-12 17:32:48] 2025-10-12 21:32:09,039 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:32:48] 2025-10-12 21:32:09,039 | INFO     | ***************************************
[2025-10-12 17:32:48] 2025-10-12 21:32:09,039 | INFO     | 
[2025-10-12 17:32:48] 2025-10-12 21:32:09,040 | INFO     | architecture information:
[2025-10-12 17:32:48] 2025-10-12 21:32:09,040 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:32:48] 2025-10-12 21:32:09,052 | INFO     | cat /etc/os-release:
[2025-10-12 17:32:48] NAME="CentOS Linux"
[2025-10-12 17:32:48] VERSION="7 (Core)"
[2025-10-12 17:32:48] ID="centos"
[2025-10-12 17:32:48] ID_LIKE="rhel fedora"
[2025-10-12 17:32:48] VERSION_ID="7"
[2025-10-12 17:32:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:32:48] ANSI_COLOR="0;31"
[2025-10-12 17:32:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:32:48] HOME_URL="https://www.centos.org/"
[2025-10-12 17:32:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:32:48] 
[2025-10-12 17:32:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:32:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:32:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:32:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:32:48] 
[2025-10-12 17:32:48] 2025-10-12 21:32:09,052 | INFO     | ***************************************
[2025-10-12 17:32:48] 2025-10-12 21:32:09,555 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 17:32:48] 2025-10-12 21:32:09,571 | INFO     | sufficient remaining disk space (28055699456 B)
[2025-10-12 17:32:48] 2025-10-12 21:32:09,572 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:32:48] 2025-10-12 21:32:09,572 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:32:48] 2025-10-12 21:32:09,572 | INFO     | update_server=False
[2025-10-12 17:32:48] 2025-10-12 21:32:09,572 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:32:48] 2025-10-12 21:32:09,573 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:32:48] 2025-10-12 21:32:09,573 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:32:48] 2025-10-12 21:32:09,609 | INFO     | all job control threads have been joined
[2025-10-12 17:32:48] 2025-10-12 21:32:09,685 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:32:48] 2025-10-12 21:32:09,685 | INFO     | aborting loop
[2025-10-12 17:32:48] 2025-10-12 21:32:10,084 | INFO     | all payload control threads have been joined
[2025-10-12 17:32:48] 2025-10-12 21:32:10,522 | INFO     | all data control threads have been joined
[2025-10-12 17:32:48] 2025-10-12 21:32:10,578 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:32:48] 2025-10-12 21:32:10,579 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:32:48] 2025-10-12 21:32:10,585 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:32:48] 2025-10-12 21:32:10,599 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:32:48] 2025-10-12 21:32:10,614 | INFO     | [job] control thread has finished
[2025-10-12 17:32:48] 2025-10-12 21:32:10,690 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:32:48] 2025-10-12 21:32:10,870 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:32:48] 2025-10-12 21:32:10,900 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:32:48] 2025-10-12 21:32:11,089 | INFO     | [payload] control thread has finished
[2025-10-12 17:32:48] 2025-10-12 21:32:11,509 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:32:48] 2025-10-12 21:32:11,528 | INFO     | [data] control thread has finished
[2025-10-12 17:32:48] 2025-10-12 21:32:11,583 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:32:48] 2025-10-12 21:32:11,747 | INFO     | [job] validate thread has finished
[2025-10-12 17:32:48] 2025-10-12 21:32:11,765 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:32:48] 2025-10-12 21:32:11,791 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:32:48] 2025-10-12 21:32:12,591 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:32:48] 2025-10-12 21:32:13,580 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:32:48] 2025-10-12 21:32:40,165 | INFO     | PID=23394 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 17:32:48] 2025-10-12 21:32:40,165 | INFO     | .. there are 3 such processes running
[2025-10-12 17:32:48] 2025-10-12 21:32:40,165 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:32:48] 2025-10-12 21:32:40,166 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:32:48] 2025-10-12 21:32:40,166 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:32:48] 2025-10-12 21:32:41,121 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:32:48] 2025-10-12 21:32:43,113 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139811365001024)>', '<ExcThread(monitor, started 139811067238144)>']
[2025-10-12 17:32:48] 2025-10-12 21:32:43,185 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:32:48] 2025-10-12 21:32:43,185 | INFO     | [monitor] control thread has ended
[2025-10-12 17:32:48] 2025-10-12 21:32:48,117 | INFO     | all workflow threads have been joined
[2025-10-12 17:32:48] 2025-10-12 21:32:48,132 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:32:48] 2025-10-12 21:32:48,132 | INFO     | traces error code: 0
[2025-10-12 17:32:48] 2025-10-12 21:32:48,133 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:32:48] 2025-10-12 21:32:48,267 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:32:48] 2025-10-12 21:32:48,270 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:32:48] 2025-10-12 21:32:48,272 [wrapper] pilotpid: 23394
[2025-10-12 17:32:48] 2025-10-12 21:32:48,274 [wrapper] Pilot exit status: 0
[2025-10-12 17:32:48] 2025-10-12 21:32:48,282 [wrapper] pandaids: 6840223775
[2025-10-12 17:32:48] 2025-10-12 21:32:48,322 [wrapper] cleanup supervisor_pilot  5625 23395
[2025-10-12 17:32:48] 2025-10-12 21:32:48,325 [wrapper] Test setup, not cleaning
[2025-10-12 17:32:48] 2025-10-12 21:32:48,327 [wrapper] apfmon messages muted
[2025-10-12 17:32:48] 2025-10-12 21:32:48,330 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:32:48] 2025-10-12 21:32:48,332 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:32:48]  *** Error codes and diagnostics ***
[2025-10-12 17:32:48]     "exeErrorCode": 0,
[2025-10-12 17:32:48]     "exeErrorDiag": "",
[2025-10-12 17:32:48]     "pilotErrorCode": 0,
[2025-10-12 17:32:48]     "pilotErrorDiag": "",
[2025-10-12 17:32:48]  *** Listing of results directory ***
[2025-10-12 17:32:48] total 411260
[2025-10-12 17:32:48] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 11:00 pilot3.tar.gz
[2025-10-12 17:32:48] -rwx------ 1 boincer umatlas     36292 Oct 12 11:12 runpilot2-wrapper.sh
[2025-10-12 17:32:48] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 11:12 queuedata.json
[2025-10-12 17:32:48] -rw-r--r-- 1 boincer umatlas       100 Oct 12 14:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:32:48] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 14:27 run_atlas
[2025-10-12 17:32:48] -rw-r--r-- 1 boincer umatlas       105 Oct 12 14:27 job.xml
[2025-10-12 17:32:48] -rw-r--r-- 2 boincer umatlas 219370603 Oct 12 14:27 EVNT.46676267._004557.pool.root.1
[2025-10-12 17:32:48] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 14:27 start_atlas.sh
[2025-10-12 17:32:48] drwxrwx--x 2 boincer umatlas      4096 Oct 12 14:27 shared
[2025-10-12 17:32:48] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 14:27 input.tar.gz
[2025-10-12 17:32:48] -rw-r--r-- 1 boincer umatlas         0 Oct 12 14:27 boinc_lockfile
[2025-10-12 17:32:48] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 14:27 pandaJob.out
[2025-10-12 17:32:48] -rw------- 1 boincer umatlas    975528 Oct 12 14:27 agis_schedconf.cvmfs.json
[2025-10-12 17:32:48] drwx------ 5 boincer umatlas      4096 Oct 12 14:27 pilot3
[2025-10-12 17:32:48] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 17:28 init_data.xml
[2025-10-12 17:32:48] -rw------- 1 boincer umatlas 193880223 Oct 12 17:31 HITS.46676269._081879.pool.root.1
[2025-10-12 17:32:48] -rw-r--r-- 1 boincer umatlas       530 Oct 12 17:31 boinc_task_state.xml
[2025-10-12 17:32:48] -rw------- 1 boincer umatlas      1053 Oct 12 17:31 memory_monitor_summary.json
[2025-10-12 17:32:48] -rw------- 1 boincer umatlas   1560580 Oct 12 17:31 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:32:48] -rw------- 1 boincer umatlas    426726 Oct 12 17:31 log.46676269._081879.job.log.tgz.1
[2025-10-12 17:32:48] -rw------- 1 boincer umatlas      7859 Oct 12 17:32 heartbeat.json
[2025-10-12 17:32:48] -rw------- 1 boincer umatlas        95 Oct 12 17:32 pilot_heartbeat.json
[2025-10-12 17:32:48] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 17:32 boinc_mmap_file
[2025-10-12 17:32:48] -rw-r--r-- 1 boincer umatlas        28 Oct 12 17:32 wrapper_checkpoint.txt
[2025-10-12 17:32:48] -rw------- 1 boincer umatlas      4821 Oct 12 17:32 pilotlog.txt
[2025-10-12 17:32:48] -rw------- 1 boincer umatlas   1559973 Oct 12 17:32 log.46676269._081879.job.log.1
[2025-10-12 17:32:48] -rw------- 1 boincer umatlas       357 Oct 12 17:32 output.list
[2025-10-12 17:32:48] -rw-r--r-- 1 boincer umatlas       620 Oct 12 17:32 runtime_log
[2025-10-12 17:32:48] -rw------- 1 boincer umatlas   2007040 Oct 12 17:32 result.tar.gz
[2025-10-12 17:32:48] -rw------- 1 boincer umatlas       662 Oct 12 17:32 YcJNDmPvCS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmtDUMDmyyzg4m.diag
[2025-10-12 17:32:48] -rw-r--r-- 1 boincer umatlas      8704 Oct 12 17:32 runtime_log.err
[2025-10-12 17:32:48] -rw-r--r-- 1 boincer umatlas     20873 Oct 12 17:32 stderr.txt
[2025-10-12 17:32:48] HITS file was successfully produced:
[2025-10-12 17:32:48] -rw------- 1 boincer umatlas 193880223 Oct 12 17:31 shared/HITS.pool.root.1
[2025-10-12 17:32:48]  *** Contents of shared directory: ***
[2025-10-12 17:32:48] total 406112
[2025-10-12 17:32:48] -rw-r--r-- 2 boincer umatlas 219370603 Oct 12 14:27 ATLAS.root_0
[2025-10-12 17:32:48] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 14:27 start_atlas.sh
[2025-10-12 17:32:48] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 14:27 input.tar.gz
[2025-10-12 17:32:48] -rw------- 1 boincer umatlas 193880223 Oct 12 17:31 HITS.pool.root.1
[2025-10-12 17:32:48] -rw------- 1 boincer umatlas   2007040 Oct 12 17:32 result.tar.gz
17:32:49 (19609): run_atlas exited; CPU time 84513.311960
17:32:49 (19609): called boinc_finish(0)

</stderr_txt>
]]>

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