Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:03:29 (3319059): wrapper (7.7.26015): starting
05:03:29 (3319059): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 05:03:29] Arguments: --nthreads 3
[2025-10-13 05:03:29] Threads: 3
[2025-10-13 05:03:29] Checking for CVMFS
[2025-10-13 05:03:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:03:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:03:29] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:03:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:03:29] 2.9.2.0 1719469 5247 85944 151645 2 57 30691854 36864000 0 130560 0 4201317 99.991 178747 816 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 05:03:29] CVMFS is ok
[2025-10-13 05:03:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:03:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:03:29] Further information can be found at the LHC@home message board.
[2025-10-13 05:03:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:03:29] Checking for apptainer binary...
[2025-10-13 05:03:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:03:29] Running /usr/bin/apptainer --version
[2025-10-13 05:03:29] apptainer version 1.4.1-1.1
[2025-10-13 05:03:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:03:29] thA349
[2025-10-13 05:03:29] apptainer works
[2025-10-13 05:03:29] Set ATHENA_PROC_NUMBER=3
[2025-10-13 05:03:29] Set ATHENA_CORE_NUMBER=3
[2025-10-13 05:03:29] Starting ATLAS job with PandaID=6840223400
[2025-10-13 05:03:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:26:48]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:26:48] 2025-10-13 04:26:10,469 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 06:26:48] 2025-10-13 04:26:10,469 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 06:26:48] 2025-10-13 04:26:10,469 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 06:26:48] 2025-10-13 04:26:10,469 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 06:26:48] 2025-10-13 04:26:10,469 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 06:26:48] 2025-10-13 04:26:10,469 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 06:26:48] 2025-10-13 04:26:10,469 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 06:26:48] 2025-10-13 04:26:10,469 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 06:26:48] 2025-10-13 04:26:10,469 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 06:26:48] 2025-10-13 04:26:10,469 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:26:48] 2025-10-13 04:26:10,470 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:26:48] 2025-10-13 04:26:10,470 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:26:48] 2025-10-13 04:26:10,470 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:26:48] 2025-10-13 04:26:10,470 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:26:48] 2025-10-13 04:26:10,470 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:26:48] 2025-10-13 04:26:10,470 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:26:48] 2025-10-13 04:26:10,470 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:26:48] 2025-10-13 04:26:10,470 | INFO     | job 6840223400 has completed (purged errors)
[2025-10-13 06:26:48] 2025-10-13 04:26:10,470 | INFO     | overall cleanup function is called
[2025-10-13 06:26:48] 2025-10-13 04:26:11,476 | INFO     | --- collectZombieJob: --- 10, [3329237]
[2025-10-13 06:26:48] 2025-10-13 04:26:11,476 | INFO     | zombie collector waiting for pid 3329237
[2025-10-13 06:26:48] 2025-10-13 04:26:11,476 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:26:48] 2025-10-13 04:26:11,477 | INFO     | collected zombie processes
[2025-10-13 06:26:48] 2025-10-13 04:26:11,477 | INFO     | will attempt to kill all subprocesses of pid=3329237
[2025-10-13 06:26:48] 2025-10-13 04:26:11,519 | INFO     | process IDs to be killed: [3329237] (in reverse order)
[2025-10-13 06:26:48] 2025-10-13 04:26:11,544 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:26:48] 2025-10-13 04:26:11,545 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:26:48] 2025-10-13 04:26:11,546 | INFO     | did not find any defunct processes belonging to 3329237
[2025-10-13 06:26:48] 2025-10-13 04:26:11,547 | INFO     | did not find any defunct processes belonging to 3329237
[2025-10-13 06:26:48] 2025-10-13 04:26:11,547 | INFO     | ready for new job
[2025-10-13 06:26:48] 2025-10-13 04:26:11,547 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:26:48] 2025-10-13 04:26:11,548 | INFO     | ***************************************
[2025-10-13 06:26:48] 2025-10-13 04:26:11,548 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:26:48] 2025-10-13 04:26:11,548 | INFO     | ***************************************
[2025-10-13 06:26:48] 2025-10-13 04:26:11,548 | INFO     | 
[2025-10-13 06:26:48] 2025-10-13 04:26:11,548 | INFO     | architecture information:
[2025-10-13 06:26:48] 2025-10-13 04:26:11,548 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:26:48] 2025-10-13 04:26:11,558 | INFO     | cat /etc/os-release:
[2025-10-13 06:26:48] NAME="CentOS Linux"
[2025-10-13 06:26:48] VERSION="7 (Core)"
[2025-10-13 06:26:48] ID="centos"
[2025-10-13 06:26:48] ID_LIKE="rhel fedora"
[2025-10-13 06:26:48] VERSION_ID="7"
[2025-10-13 06:26:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:26:48] ANSI_COLOR="0;31"
[2025-10-13 06:26:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:26:48] HOME_URL="https://www.centos.org/"
[2025-10-13 06:26:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:26:48] 
[2025-10-13 06:26:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:26:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:26:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:26:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:26:48] 
[2025-10-13 06:26:48] 2025-10-13 04:26:11,558 | INFO     | ***************************************
[2025-10-13 06:26:48] 2025-10-13 04:26:12,061 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 06:26:48] 2025-10-13 04:26:12,075 | INFO     | sufficient remaining disk space (273846108160 B)
[2025-10-13 06:26:48] 2025-10-13 04:26:12,075 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:26:48] 2025-10-13 04:26:12,075 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:26:48] 2025-10-13 04:26:12,075 | INFO     | update_server=False
[2025-10-13 06:26:48] 2025-10-13 04:26:12,075 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:26:48] 2025-10-13 04:26:12,076 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:26:48] 2025-10-13 04:26:12,076 | INFO     | aborting loop
[2025-10-13 06:26:48] 2025-10-13 04:26:12,076 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:26:48] 2025-10-13 04:26:12,316 | INFO     | all data control threads have been joined
[2025-10-13 06:26:48] 2025-10-13 04:26:12,417 | INFO     | all job control threads have been joined
[2025-10-13 06:26:48] 2025-10-13 04:26:12,623 | INFO     | all payload control threads have been joined
[2025-10-13 06:26:48] 2025-10-13 04:26:12,835 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:26:48] 2025-10-13 04:26:13,081 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:26:48] 2025-10-13 04:26:13,081 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:26:48] 2025-10-13 04:26:13,082 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:26:48] 2025-10-13 04:26:13,200 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:26:48] 2025-10-13 04:26:13,236 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:26:48] 2025-10-13 04:26:13,322 | INFO     | [data] control thread has finished
[2025-10-13 06:26:48] 2025-10-13 04:26:13,423 | INFO     | [job] control thread has finished
[2025-10-13 06:26:48] 2025-10-13 04:26:13,455 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:26:48] 2025-10-13 04:26:13,629 | INFO     | [payload] control thread has finished
[2025-10-13 06:26:48] 2025-10-13 04:26:13,965 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:26:48] 2025-10-13 04:26:14,142 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:26:48] 2025-10-13 04:26:14,279 | INFO     | [job] validate thread has finished
[2025-10-13 06:26:48] 2025-10-13 04:26:14,355 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:26:48] 2025-10-13 04:26:14,414 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:26:48] 2025-10-13 04:26:15,237 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:26:48] 2025-10-13 04:26:16,843 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:26:48] 2025-10-13 04:26:22,573 | INFO     | job.realtimelogging is not enabled
[2025-10-13 06:26:48] 2025-10-13 04:26:23,579 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:26:48] 2025-10-13 04:26:41,474 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:26:48] 2025-10-13 04:26:42,446 | INFO     | PID=3322793 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 06:26:48] 2025-10-13 04:26:42,446 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:26:48] 2025-10-13 04:26:42,446 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:26:48] 2025-10-13 04:26:42,446 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:26:48] 2025-10-13 04:26:43,450 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140061320738624)>', '<ExcThread(monitor, started 140060519278336)>']
[2025-10-13 06:26:48] 2025-10-13 04:26:43,452 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:26:48] 2025-10-13 04:26:43,452 | INFO     | [monitor] control thread has ended
[2025-10-13 06:26:48] 2025-10-13 04:26:48,476 | INFO     | all workflow threads have been joined
[2025-10-13 06:26:48] 2025-10-13 04:26:48,476 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:26:48] 2025-10-13 04:26:48,476 | INFO     | traces error code: 0
[2025-10-13 06:26:48] 2025-10-13 04:26:48,476 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:26:48] 2025-10-13 04:26:48,527 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:26:48] 2025-10-13 04:26:48,529 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:26:48] 2025-10-13 04:26:48,532 [wrapper] pilotpid: 3322793
[2025-10-13 06:26:48] 2025-10-13 04:26:48,534 [wrapper] Pilot exit status: 0
[2025-10-13 06:26:48] 2025-10-13 04:26:48,542 [wrapper] pandaids: 6840223400
[2025-10-13 06:26:48] 2025-10-13 04:26:48,559 [wrapper] cleanup supervisor_pilot 3341244 3322794
[2025-10-13 06:26:48] 2025-10-13 04:26:48,562 [wrapper] Test setup, not cleaning
[2025-10-13 06:26:48] 2025-10-13 04:26:48,564 [wrapper] apfmon messages muted
[2025-10-13 06:26:48] 2025-10-13 04:26:48,567 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:26:48] 2025-10-13 04:26:48,569 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:26:48]  *** Error codes and diagnostics ***
[2025-10-13 06:26:48]     "exeErrorCode": 0,
[2025-10-13 06:26:48]     "exeErrorDiag": "",
[2025-10-13 06:26:48]     "pilotErrorCode": 0,
[2025-10-13 06:26:48]     "pilotErrorDiag": "",
[2025-10-13 06:26:48]  *** Listing of results directory ***
[2025-10-13 06:26:48] total 412400
[2025-10-13 06:26:48] -rw-r--r-- 1 boinc boinc    557409 Oct 12 16:30 pilot3.tar.gz
[2025-10-13 06:26:48] -rw-r--r-- 1 boinc boinc      5112 Oct 12 16:58 queuedata.json
[2025-10-13 06:26:48] -rwx------ 1 boinc boinc     36292 Oct 12 16:59 runpilot2-wrapper.sh
[2025-10-13 06:26:48] -rw-r--r-- 1 boinc boinc       100 Oct 13 05:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:26:48] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 05:03 run_atlas
[2025-10-13 06:26:48] -rw-r--r-- 1 boinc boinc       105 Oct 13 05:03 job.xml
[2025-10-13 06:26:48] -rw-r--r-- 2 boinc boinc 223169820 Oct 13 05:03 EVNT.46676267._000566.pool.root.1
[2025-10-13 06:26:48] -rw-r--r-- 2 boinc boinc    569684 Oct 13 05:03 input.tar.gz
[2025-10-13 06:26:48] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:03 start_atlas.sh
[2025-10-13 06:26:48] drwxrwx--x 2 boinc boinc      4096 Oct 13 05:03 shared
[2025-10-13 06:26:48] -rw-r--r-- 1 boinc boinc         0 Oct 13 05:03 boinc_setup_complete
[2025-10-13 06:26:48] -rw-r--r-- 1 boinc boinc      6446 Oct 13 05:03 init_data.xml
[2025-10-13 06:26:48] -rw-r--r-- 1 boinc boinc         0 Oct 13 05:03 boinc_lockfile
[2025-10-13 06:26:48] -rw-r--r-- 1 boinc boinc      2548 Oct 13 05:03 pandaJob.out
[2025-10-13 06:26:48] -rw------- 1 boinc boinc    974373 Oct 13 05:03 agis_schedconf.cvmfs.json
[2025-10-13 06:26:48] -rw------- 1 boinc boinc   1560580 Oct 13 05:03 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:26:48] drwx------ 5 boinc boinc      4096 Oct 13 05:03 pilot3
[2025-10-13 06:26:48] -rw-r--r-- 1 boinc boinc       529 Oct 13 06:25 boinc_task_state.xml
[2025-10-13 06:26:48] -rw------- 1 boinc boinc 193246700 Oct 13 06:25 HITS.46676269._081509.pool.root.1
[2025-10-13 06:26:48] -rw------- 1 boinc boinc      1014 Oct 13 06:25 memory_monitor_summary.json
[2025-10-13 06:26:48] -rw------- 1 boinc boinc    263064 Oct 13 06:26 log.46676269._081509.job.log.tgz.1
[2025-10-13 06:26:48] -rw------- 1 boinc boinc        95 Oct 13 06:26 pilot_heartbeat.json
[2025-10-13 06:26:48] -rw------- 1 boinc boinc      7744 Oct 13 06:26 heartbeat.json
[2025-10-13 06:26:48] -rw-r--r-- 1 boinc boinc      8192 Oct 13 06:26 boinc_mmap_file
[2025-10-13 06:26:48] -rw-r--r-- 1 boinc boinc        27 Oct 13 06:26 wrapper_checkpoint.txt
[2025-10-13 06:26:48] -rw------- 1 boinc boinc      4824 Oct 13 06:26 pilotlog.txt
[2025-10-13 06:26:48] -rw------- 1 boinc boinc    727538 Oct 13 06:26 log.46676269._081509.job.log.1
[2025-10-13 06:26:48] -rw------- 1 boinc boinc       357 Oct 13 06:26 output.list
[2025-10-13 06:26:48] -rw-r--r-- 1 boinc boinc       620 Oct 13 06:26 runtime_log
[2025-10-13 06:26:48] -rw------- 1 boinc boinc   1013760 Oct 13 06:26 result.tar.gz
[2025-10-13 06:26:48] -rw------- 1 boinc boinc       658 Oct 13 06:26 vKeKDmWiCS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGMkNDmwrjVqm.diag
[2025-10-13 06:26:48] -rw-r--r-- 1 boinc boinc      8777 Oct 13 06:26 runtime_log.err
[2025-10-13 06:26:48] -rw-r--r-- 1 boinc boinc     12641 Oct 13 06:26 stderr.txt
[2025-10-13 06:26:48] HITS file was successfully produced:
[2025-10-13 06:26:48] -rw------- 1 boinc boinc 193246700 Oct 13 06:25 shared/HITS.pool.root.1
[2025-10-13 06:26:48]  *** Contents of shared directory: ***
[2025-10-13 06:26:48] total 408236
[2025-10-13 06:26:48] -rw-r--r-- 2 boinc boinc 223169820 Oct 13 05:03 ATLAS.root_0
[2025-10-13 06:26:48] -rw-r--r-- 2 boinc boinc    569684 Oct 13 05:03 input.tar.gz
[2025-10-13 06:26:48] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:03 start_atlas.sh
[2025-10-13 06:26:48] -rw------- 1 boinc boinc 193246700 Oct 13 06:25 HITS.pool.root.1
[2025-10-13 06:26:48] -rw------- 1 boinc boinc   1013760 Oct 13 06:26 result.tar.gz
06:26:50 (3319059): run_atlas exited; CPU time 14233.449128
06:26:50 (3319059): called boinc_finish(0)

</stderr_txt>
]]>

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