Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:04:09 (3004684): wrapper (7.7.26015): starting
06:04:09 (3004684): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 06:04:09] Arguments: --nthreads 3
[2025-10-13 06:04:09] Threads: 3
[2025-10-13 06:04:09] Checking for CVMFS
[2025-10-13 06:04:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 06:04:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 06:04:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 06:04:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 06:04:10] 2.9.2.0 1455317 5322 67708 151647 3 57 30195623 36864000 0 130560 0 4066744 99.991 178600 878 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 06:04:10] CVMFS is ok
[2025-10-13 06:04:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 06:04:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 06:04:10] Further information can be found at the LHC@home message board.
[2025-10-13 06:04:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 06:04:10] Checking for apptainer binary...
[2025-10-13 06:04:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 06:04:10] Running /usr/bin/apptainer --version
[2025-10-13 06:04:10] apptainer version 1.4.1-1.1
[2025-10-13 06:04:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 06:04:10] magicA252a
[2025-10-13 06:04:10] apptainer works
[2025-10-13 06:04:10] Set ATHENA_PROC_NUMBER=3
[2025-10-13 06:04:10] Set ATHENA_CORE_NUMBER=3
[2025-10-13 06:04:10] Starting ATLAS job with PandaID=6840428507
[2025-10-13 06:04:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 07:31:34]  *** The last 200 lines of the pilot log: ***
[2025-10-13 07:31:34] 2025-10-13 05:31:00,607 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 07:31:34] 2025-10-13 05:31:00,607 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 07:31:34] 2025-10-13 05:31:00,607 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 07:31:34] 2025-10-13 05:31:00,607 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 07:31:34] 2025-10-13 05:31:00,607 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 07:31:34] 2025-10-13 05:31:00,607 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 07:31:34] 2025-10-13 05:31:00,607 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 07:31:34] 2025-10-13 05:31:00,607 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 07:31:34] 2025-10-13 05:31:00,607 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 07:31:34] 2025-10-13 05:31:00,607 | INFO     | job 6840428507 has completed (purged errors)
[2025-10-13 07:31:34] 2025-10-13 05:31:00,607 | INFO     | overall cleanup function is called
[2025-10-13 07:31:34] 2025-10-13 05:31:01,613 | INFO     | --- collectZombieJob: --- 10, [3014869]
[2025-10-13 07:31:34] 2025-10-13 05:31:01,614 | INFO     | zombie collector waiting for pid 3014869
[2025-10-13 07:31:34] 2025-10-13 05:31:01,614 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 07:31:34] 2025-10-13 05:31:01,614 | INFO     | collected zombie processes
[2025-10-13 07:31:34] 2025-10-13 05:31:01,614 | INFO     | will attempt to kill all subprocesses of pid=3014869
[2025-10-13 07:31:34] 2025-10-13 05:31:01,653 | INFO     | process IDs to be killed: [3014869] (in reverse order)
[2025-10-13 07:31:34] 2025-10-13 05:31:01,678 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 07:31:34] 2025-10-13 05:31:01,678 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 07:31:34] 2025-10-13 05:31:01,679 | INFO     | did not find any defunct processes belonging to 3014869
[2025-10-13 07:31:34] 2025-10-13 05:31:01,680 | INFO     | did not find any defunct processes belonging to 3014869
[2025-10-13 07:31:34] 2025-10-13 05:31:01,680 | INFO     | ready for new job
[2025-10-13 07:31:34] 2025-10-13 05:31:01,680 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 07:31:34] 2025-10-13 05:31:01,680 | INFO     | ***************************************
[2025-10-13 07:31:34] 2025-10-13 05:31:01,680 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 07:31:34] 2025-10-13 05:31:01,681 | INFO     | ***************************************
[2025-10-13 07:31:34] 2025-10-13 05:31:01,681 | INFO     | 
[2025-10-13 07:31:34] 2025-10-13 05:31:01,681 | INFO     | architecture information:
[2025-10-13 07:31:34] 2025-10-13 05:31:01,681 | INFO     | executing command: cat /etc/os-release
[2025-10-13 07:31:34] 2025-10-13 05:31:01,691 | INFO     | cat /etc/os-release:
[2025-10-13 07:31:34] NAME="CentOS Linux"
[2025-10-13 07:31:34] VERSION="7 (Core)"
[2025-10-13 07:31:34] ID="centos"
[2025-10-13 07:31:34] ID_LIKE="rhel fedora"
[2025-10-13 07:31:34] VERSION_ID="7"
[2025-10-13 07:31:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 07:31:34] ANSI_COLOR="0;31"
[2025-10-13 07:31:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 07:31:34] HOME_URL="https://www.centos.org/"
[2025-10-13 07:31:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 07:31:34] 
[2025-10-13 07:31:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 07:31:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 07:31:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 07:31:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 07:31:34] 
[2025-10-13 07:31:34] 2025-10-13 05:31:01,691 | INFO     | ***************************************
[2025-10-13 07:31:34] 2025-10-13 05:31:02,194 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 07:31:34] 2025-10-13 05:31:02,207 | INFO     | sufficient remaining disk space (329830629376 B)
[2025-10-13 07:31:34] 2025-10-13 05:31:02,207 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 07:31:34] 2025-10-13 05:31:02,207 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 07:31:34] 2025-10-13 05:31:02,207 | INFO     | update_server=False
[2025-10-13 07:31:34] 2025-10-13 05:31:02,208 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 07:31:34] 2025-10-13 05:31:02,208 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:31:34] 2025-10-13 05:31:02,208 | INFO     | aborting loop
[2025-10-13 07:31:34] 2025-10-13 05:31:02,208 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:31:34] 2025-10-13 05:31:02,439 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 07:31:34] 2025-10-13 05:31:02,509 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 07:31:34] 2025-10-13 05:31:02,549 | INFO     | all payload control threads have been joined
[2025-10-13 07:31:34] 2025-10-13 05:31:02,601 | INFO     | all job control threads have been joined
[2025-10-13 07:31:34] 2025-10-13 05:31:02,805 | INFO     | all data control threads have been joined
[2025-10-13 07:31:34] 2025-10-13 05:31:03,213 | INFO     | [job] retrieve thread has finished
[2025-10-13 07:31:34] 2025-10-13 05:31:03,214 | INFO     | [job] job monitor thread has finished
[2025-10-13 07:31:34] 2025-10-13 05:31:03,215 | INFO     | [job] queue monitor thread has finished
[2025-10-13 07:31:34] 2025-10-13 05:31:03,555 | INFO     | [payload] control thread has finished
[2025-10-13 07:31:34] 2025-10-13 05:31:03,565 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 07:31:34] 2025-10-13 05:31:03,607 | INFO     | [job] control thread has finished
[2025-10-13 07:31:34] 2025-10-13 05:31:03,634 | INFO     | [payload] failed_post thread has finished
[2025-10-13 07:31:34] 2025-10-13 05:31:03,811 | INFO     | [data] control thread has finished
[2025-10-13 07:31:34] 2025-10-13 05:31:03,865 | INFO     | [data] copytool_in thread has finished
[2025-10-13 07:31:34] 2025-10-13 05:31:03,869 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 07:31:34] 2025-10-13 05:31:04,090 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 07:31:34] 2025-10-13 05:31:04,103 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 07:31:34] 2025-10-13 05:31:04,146 | INFO     | [job] validate thread has finished
[2025-10-13 07:31:34] 2025-10-13 05:31:04,397 | INFO     | [payload] validate_post thread has finished
[2025-10-13 07:31:34] 2025-10-13 05:31:04,445 | INFO     | [data] copytool_out thread has finished
[2025-10-13 07:31:34] 2025-10-13 05:31:06,517 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 07:31:34] 2025-10-13 05:31:29,165 | INFO     | [monitor] cgroup control has ended
[2025-10-13 07:31:34] 2025-10-13 05:31:29,258 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140229824821056)>', '<ExcThread(monitor, started 140229180638976)>']
[2025-10-13 07:31:34] 2025-10-13 05:31:32,271 | INFO     | PID=3008412 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 07:31:34] 2025-10-13 05:31:32,271 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 07:31:34] 2025-10-13 05:31:32,271 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 07:31:34] 2025-10-13 05:31:32,271 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 07:31:34] 2025-10-13 05:31:32,271 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 07:31:34] 2025-10-13 05:31:32,271 | INFO     | [monitor] control thread has ended
[2025-10-13 07:31:34] 2025-10-13 05:31:34,284 | INFO     | all workflow threads have been joined
[2025-10-13 07:31:34] 2025-10-13 05:31:34,284 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 07:31:34] 2025-10-13 05:31:34,285 | INFO     | traces error code: 0
[2025-10-13 07:31:34] 2025-10-13 05:31:34,285 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 07:31:34] 2025-10-13 05:31:34,332 [wrapper] ==== pilot stdout END ====
[2025-10-13 07:31:34] 2025-10-13 05:31:34,336 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 07:31:34] 2025-10-13 05:31:34,338 [wrapper] pilotpid: 3008412
[2025-10-13 07:31:34] 2025-10-13 05:31:34,341 [wrapper] Pilot exit status: 0
[2025-10-13 07:31:34] 2025-10-13 05:31:34,348 [wrapper] pandaids: 6840428507
[2025-10-13 07:31:34] 2025-10-13 05:31:34,364 [wrapper] cleanup supervisor_pilot 3026958 3008413
[2025-10-13 07:31:34] 2025-10-13 05:31:34,367 [wrapper] Test setup, not cleaning
[2025-10-13 07:31:34] 2025-10-13 05:31:34,371 [wrapper] apfmon messages muted
[2025-10-13 07:31:34] 2025-10-13 05:31:34,373 [wrapper] ==== wrapper stdout END ====
[2025-10-13 07:31:34] 2025-10-13 05:31:34,376 [wrapper] ==== wrapper stderr END ====
[2025-10-13 07:31:34]  *** Error codes and diagnostics ***
[2025-10-13 07:31:34]     "exeErrorCode": 0,
[2025-10-13 07:31:34]     "exeErrorDiag": "",
[2025-10-13 07:31:34]     "pilotErrorCode": 0,
[2025-10-13 07:31:34]     "pilotErrorDiag": "",
[2025-10-13 07:31:34]  *** Listing of results directory ***
[2025-10-13 07:31:34] total 407208
[2025-10-13 07:31:34] -rw-r--r-- 1 boinc boinc    557409 Oct 12 18:49 pilot3.tar.gz
[2025-10-13 07:31:34] -rwx------ 1 boinc boinc     36292 Oct 12 18:52 runpilot2-wrapper.sh
[2025-10-13 07:31:34] -rw-r--r-- 1 boinc boinc      5112 Oct 12 18:52 queuedata.json
[2025-10-13 07:31:34] -rw-r--r-- 1 boinc boinc       100 Oct 13 06:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 07:31:34] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 06:04 run_atlas
[2025-10-13 07:31:34] -rw-r--r-- 1 boinc boinc       105 Oct 13 06:04 job.xml
[2025-10-13 07:31:34] -rw-r--r-- 2 boinc boinc 222522454 Oct 13 06:04 EVNT.46676267._002020.pool.root.1
[2025-10-13 07:31:34] -rw-r--r-- 2 boinc boinc    569684 Oct 13 06:04 input.tar.gz
[2025-10-13 07:31:34] -rw-r--r-- 2 boinc boinc     15120 Oct 13 06:04 start_atlas.sh
[2025-10-13 07:31:34] drwxrwx--x 2 boinc boinc      4096 Oct 13 06:04 shared
[2025-10-13 07:31:34] -rw-r--r-- 1 boinc boinc         0 Oct 13 06:04 boinc_setup_complete
[2025-10-13 07:31:34] -rw-r--r-- 1 boinc boinc      6200 Oct 13 06:04 init_data.xml
[2025-10-13 07:31:34] -rw-r--r-- 1 boinc boinc         0 Oct 13 06:04 boinc_lockfile
[2025-10-13 07:31:34] -rw-r--r-- 1 boinc boinc      2550 Oct 13 06:04 pandaJob.out
[2025-10-13 07:31:34] -rw------- 1 boinc boinc    974373 Oct 13 06:04 agis_schedconf.cvmfs.json
[2025-10-13 07:31:34] -rw------- 1 boinc boinc   1560580 Oct 13 06:04 agis_ddmendpoints.agis.ALL.json
[2025-10-13 07:31:34] drwx------ 5 boinc boinc      4096 Oct 13 06:04 pilot3
[2025-10-13 07:31:34] -rw------- 1 boinc boinc 188543631 Oct 13 07:30 HITS.46676269._084109.pool.root.1
[2025-10-13 07:31:34] -rw-r--r-- 1 boinc boinc       529 Oct 13 07:30 boinc_task_state.xml
[2025-10-13 07:31:34] -rw------- 1 boinc boinc        95 Oct 13 07:30 pilot_heartbeat.json
[2025-10-13 07:31:34] -rw------- 1 boinc boinc      1023 Oct 13 07:30 memory_monitor_summary.json
[2025-10-13 07:31:34] -rw------- 1 boinc boinc    249824 Oct 13 07:30 log.46676269._084109.job.log.tgz.1
[2025-10-13 07:31:34] -rw------- 1 boinc boinc      7776 Oct 13 07:31 heartbeat.json
[2025-10-13 07:31:34] -rw-r--r-- 1 boinc boinc      8192 Oct 13 07:31 boinc_mmap_file
[2025-10-13 07:31:34] -rw-r--r-- 1 boinc boinc        27 Oct 13 07:31 wrapper_checkpoint.txt
[2025-10-13 07:31:34] -rw------- 1 boinc boinc      4752 Oct 13 07:31 pilotlog.txt
[2025-10-13 07:31:34] -rw------- 1 boinc boinc    761018 Oct 13 07:31 log.46676269._084109.job.log.1
[2025-10-13 07:31:34] -rw------- 1 boinc boinc       357 Oct 13 07:31 output.list
[2025-10-13 07:31:34] -rw-r--r-- 1 boinc boinc       620 Oct 13 07:31 runtime_log
[2025-10-13 07:31:34] -rw------- 1 boinc boinc   1034240 Oct 13 07:31 result.tar.gz
[2025-10-13 07:31:34] -rw-r--r-- 1 boinc boinc      8797 Oct 13 07:31 runtime_log.err
[2025-10-13 07:31:34] -rw------- 1 boinc boinc       662 Oct 13 07:31 0BLLDmKUES8n9Rq4apOajLDm4fhM0noT9bVof3QYDmnTUMDmNfAsIm.diag
[2025-10-13 07:31:34] -rw-r--r-- 1 boinc boinc     11728 Oct 13 07:31 stderr.txt
[2025-10-13 07:31:34] HITS file was successfully produced:
[2025-10-13 07:31:34] -rw------- 1 boinc boinc 188543631 Oct 13 07:30 shared/HITS.pool.root.1
[2025-10-13 07:31:34]  *** Contents of shared directory: ***
[2025-10-13 07:31:34] total 403032
[2025-10-13 07:31:34] -rw-r--r-- 2 boinc boinc 222522454 Oct 13 06:04 ATLAS.root_0
[2025-10-13 07:31:34] -rw-r--r-- 2 boinc boinc    569684 Oct 13 06:04 input.tar.gz
[2025-10-13 07:31:34] -rw-r--r-- 2 boinc boinc     15120 Oct 13 06:04 start_atlas.sh
[2025-10-13 07:31:34] -rw------- 1 boinc boinc 188543631 Oct 13 07:30 HITS.pool.root.1
[2025-10-13 07:31:34] -rw------- 1 boinc boinc   1034240 Oct 13 07:31 result.tar.gz
07:31:35 (3004684): run_atlas exited; CPU time 14874.721442
07:31:35 (3004684): called boinc_finish(0)

</stderr_txt>
]]>

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