Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:00:20 (3340565): wrapper (7.7.26015): starting
05:00:20 (3340565): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 05:00:20] Arguments: --nthreads 3
[2025-10-13 05:00:20] Threads: 3
[2025-10-13 05:00:20] Checking for CVMFS
[2025-10-13 05:00:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:00:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:00:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:00:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:00:21] 2.9.2.0 1827752 5066 85180 151645 0 57 29493617 36864000 0 130560 0 3940715 99.991 178586 698 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 05:00:21] CVMFS is ok
[2025-10-13 05:00:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:00:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:00:21] Further information can be found at the LHC@home message board.
[2025-10-13 05:00:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:00:21] Checking for apptainer binary...
[2025-10-13 05:00:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:00:21] Running /usr/bin/apptainer --version
[2025-10-13 05:00:21] apptainer version 1.4.1-1.1
[2025-10-13 05:00:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:00:21] thA305b
[2025-10-13 05:00:21] apptainer works
[2025-10-13 05:00:21] Set ATHENA_PROC_NUMBER=3
[2025-10-13 05:00:21] Set ATHENA_CORE_NUMBER=3
[2025-10-13 05:00:21] Starting ATLAS job with PandaID=6840392404
[2025-10-13 05:00:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:26:40]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:26:40] 2025-10-13 04:26:18,454 | INFO     | overall cleanup function is called
[2025-10-13 06:26:40] 2025-10-13 04:26:19,460 | INFO     | --- collectZombieJob: --- 10, [3350726]
[2025-10-13 06:26:40] 2025-10-13 04:26:19,461 | INFO     | zombie collector waiting for pid 3350726
[2025-10-13 06:26:40] 2025-10-13 04:26:19,461 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:26:40] 2025-10-13 04:26:19,461 | INFO     | collected zombie processes
[2025-10-13 06:26:40] 2025-10-13 04:26:19,461 | INFO     | will attempt to kill all subprocesses of pid=3350726
[2025-10-13 06:26:40] 2025-10-13 04:26:19,509 | INFO     | process IDs to be killed: [3350726] (in reverse order)
[2025-10-13 06:26:40] 2025-10-13 04:26:19,536 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:26:40] 2025-10-13 04:26:19,537 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:26:40] 2025-10-13 04:26:19,538 | INFO     | did not find any defunct processes belonging to 3350726
[2025-10-13 06:26:40] 2025-10-13 04:26:19,539 | INFO     | did not find any defunct processes belonging to 3350726
[2025-10-13 06:26:40] 2025-10-13 04:26:19,539 | INFO     | ready for new job
[2025-10-13 06:26:40] 2025-10-13 04:26:19,539 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:26:40] 2025-10-13 04:26:19,540 | INFO     | ***************************************
[2025-10-13 06:26:40] 2025-10-13 04:26:19,540 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:26:40] 2025-10-13 04:26:19,540 | INFO     | ***************************************
[2025-10-13 06:26:40] 2025-10-13 04:26:19,540 | INFO     | 
[2025-10-13 06:26:40] 2025-10-13 04:26:19,541 | INFO     | architecture information:
[2025-10-13 06:26:40] 2025-10-13 04:26:19,541 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:26:40] 2025-10-13 04:26:19,550 | INFO     | cat /etc/os-release:
[2025-10-13 06:26:40] NAME="CentOS Linux"
[2025-10-13 06:26:40] VERSION="7 (Core)"
[2025-10-13 06:26:40] ID="centos"
[2025-10-13 06:26:40] ID_LIKE="rhel fedora"
[2025-10-13 06:26:40] VERSION_ID="7"
[2025-10-13 06:26:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:26:40] ANSI_COLOR="0;31"
[2025-10-13 06:26:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:26:40] HOME_URL="https://www.centos.org/"
[2025-10-13 06:26:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:26:40] 
[2025-10-13 06:26:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:26:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:26:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:26:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:26:40] 
[2025-10-13 06:26:40] 2025-10-13 04:26:19,550 | INFO     | ***************************************
[2025-10-13 06:26:40] 2025-10-13 04:26:20,054 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 06:26:40] 2025-10-13 04:26:20,068 | INFO     | sufficient remaining disk space (174751481856 B)
[2025-10-13 06:26:40] 2025-10-13 04:26:20,068 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:26:40] 2025-10-13 04:26:20,068 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:26:40] 2025-10-13 04:26:20,068 | INFO     | update_server=False
[2025-10-13 06:26:40] 2025-10-13 04:26:20,068 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:26:40] 2025-10-13 04:26:20,068 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:26:40] 2025-10-13 04:26:20,068 | INFO     | aborting loop
[2025-10-13 06:26:40] 2025-10-13 04:26:20,069 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:26:40] 2025-10-13 04:26:20,069 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 06:26:40] 2025-10-13 04:26:20,069 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:26:40] 2025-10-13 04:26:20,069 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:26:40] 2025-10-13 04:26:20,069 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:26:40] 2025-10-13 04:26:20,269 | INFO     | all job control threads have been joined
[2025-10-13 06:26:40] 2025-10-13 04:26:20,391 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:26:40] 2025-10-13 04:26:20,456 | INFO     | all data control threads have been joined
[2025-10-13 06:26:40] 2025-10-13 04:26:21,072 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:26:40] 2025-10-13 04:26:21,073 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:26:40] 2025-10-13 04:26:21,074 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:26:40] 2025-10-13 04:26:21,101 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:26:40] 2025-10-13 04:26:21,275 | INFO     | [job] control thread has finished
[2025-10-13 06:26:40] 2025-10-13 04:26:21,339 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:26:40] 2025-10-13 04:26:21,348 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:26:40] 2025-10-13 04:26:21,351 | INFO     | [job] validate thread has finished
[2025-10-13 06:26:40] 2025-10-13 04:26:21,462 | INFO     | [data] control thread has finished
[2025-10-13 06:26:40] 2025-10-13 04:26:21,466 | INFO     | all payload control threads have been joined
[2025-10-13 06:26:40] 2025-10-13 04:26:21,856 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:26:40] 2025-10-13 04:26:22,176 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:26:40] 2025-10-13 04:26:22,201 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:26:40] 2025-10-13 04:26:22,398 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:26:40] 2025-10-13 04:26:22,472 | INFO     | [payload] control thread has finished
[2025-10-13 06:26:40] 2025-10-13 04:26:22,921 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:26:40] 2025-10-13 04:26:26,928 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:26:40] 2025-10-13 04:26:31,050 | INFO     | job.realtimelogging is not enabled
[2025-10-13 06:26:40] 2025-10-13 04:26:32,055 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:26:40] 2025-10-13 04:26:34,178 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:26:40] 2025-10-13 04:26:35,183 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140235217696576)>', '<ExcThread(monitor, started 140234415130368)>']
[2025-10-13 06:26:40] 2025-10-13 04:26:36,150 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:26:40] 2025-10-13 04:26:36,151 | INFO     | [monitor] control thread has ended
[2025-10-13 06:26:40] 2025-10-13 04:26:40,207 | INFO     | all workflow threads have been joined
[2025-10-13 06:26:40] 2025-10-13 04:26:40,207 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:26:40] 2025-10-13 04:26:40,207 | INFO     | traces error code: 0
[2025-10-13 06:26:40] 2025-10-13 04:26:40,207 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:26:40] 2025-10-13 04:26:40,259 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:26:40] 2025-10-13 04:26:40,262 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:26:40] 2025-10-13 04:26:40,264 [wrapper] pilotpid: 3344295
[2025-10-13 06:26:40] 2025-10-13 04:26:40,267 [wrapper] Pilot exit status: 0
[2025-10-13 06:26:40] 2025-10-13 04:26:40,274 [wrapper] pandaids: 6840392404
[2025-10-13 06:26:40] 2025-10-13 04:26:40,292 [wrapper] cleanup supervisor_pilot 3362916 3344296
[2025-10-13 06:26:40] 2025-10-13 04:26:40,295 [wrapper] Test setup, not cleaning
[2025-10-13 06:26:40] 2025-10-13 04:26:40,297 [wrapper] apfmon messages muted
[2025-10-13 06:26:40] 2025-10-13 04:26:40,300 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:26:40] 2025-10-13 04:26:40,302 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:26:40]  *** Error codes and diagnostics ***
[2025-10-13 06:26:40]     "exeErrorCode": 0,
[2025-10-13 06:26:40]     "exeErrorDiag": "",
[2025-10-13 06:26:40]     "pilotErrorCode": 0,
[2025-10-13 06:26:40]     "pilotErrorDiag": "",
[2025-10-13 06:26:40]  *** Listing of results directory ***
[2025-10-13 06:26:40] total 414944
[2025-10-13 06:26:40] -rw-r--r-- 1 boinc boinc    557409 Oct 12 18:42 pilot3.tar.gz
[2025-10-13 06:26:40] -rw-r--r-- 1 boinc boinc      5112 Oct 12 18:43 queuedata.json
[2025-10-13 06:26:40] -rwx------ 1 boinc boinc     36292 Oct 12 18:45 runpilot2-wrapper.sh
[2025-10-13 06:26:40] -rw-r--r-- 1 boinc boinc       100 Oct 13 05:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:26:40] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 05:00 run_atlas
[2025-10-13 06:26:40] -rw-r--r-- 1 boinc boinc       105 Oct 13 05:00 job.xml
[2025-10-13 06:26:40] -rw-r--r-- 2 boinc boinc 219972596 Oct 13 05:00 EVNT.46676267._004782.pool.root.1
[2025-10-13 06:26:40] -rw-r--r-- 2 boinc boinc    569682 Oct 13 05:00 input.tar.gz
[2025-10-13 06:26:40] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:00 start_atlas.sh
[2025-10-13 06:26:40] drwxrwx--x 2 boinc boinc      4096 Oct 13 05:00 shared
[2025-10-13 06:26:40] -rw-r--r-- 1 boinc boinc         0 Oct 13 05:00 boinc_setup_complete
[2025-10-13 06:26:40] -rw-r--r-- 1 boinc boinc      6447 Oct 13 05:00 init_data.xml
[2025-10-13 06:26:40] -rw-r--r-- 1 boinc boinc         0 Oct 13 05:00 boinc_lockfile
[2025-10-13 06:26:40] -rw-r--r-- 1 boinc boinc      2550 Oct 13 05:00 pandaJob.out
[2025-10-13 06:26:40] -rw------- 1 boinc boinc    974373 Oct 13 05:00 agis_schedconf.cvmfs.json
[2025-10-13 06:26:40] -rw------- 1 boinc boinc   1560580 Oct 13 05:00 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:26:40] drwx------ 5 boinc boinc      4096 Oct 13 05:00 pilot3
[2025-10-13 06:26:40] -rw------- 1 boinc boinc 199046689 Oct 13 06:25 HITS.46676269._083865.pool.root.1
[2025-10-13 06:26:40] -rw------- 1 boinc boinc        95 Oct 13 06:25 pilot_heartbeat.json
[2025-10-13 06:26:40] -rw-r--r-- 1 boinc boinc       530 Oct 13 06:26 boinc_task_state.xml
[2025-10-13 06:26:40] -rw------- 1 boinc boinc      1030 Oct 13 06:26 memory_monitor_summary.json
[2025-10-13 06:26:40] -rw------- 1 boinc boinc    244251 Oct 13 06:26 log.46676269._083865.job.log.tgz.1
[2025-10-13 06:26:40] -rw------- 1 boinc boinc      7749 Oct 13 06:26 heartbeat.json
[2025-10-13 06:26:40] -rw-r--r-- 1 boinc boinc      8192 Oct 13 06:26 boinc_mmap_file
[2025-10-13 06:26:40] -rw-r--r-- 1 boinc boinc        27 Oct 13 06:26 wrapper_checkpoint.txt
[2025-10-13 06:26:40] -rw------- 1 boinc boinc      4628 Oct 13 06:26 pilotlog.txt
[2025-10-13 06:26:40] -rw------- 1 boinc boinc    753383 Oct 13 06:26 log.46676269._083865.job.log.1
[2025-10-13 06:26:40] -rw------- 1 boinc boinc       357 Oct 13 06:26 output.list
[2025-10-13 06:26:40] -rw-r--r-- 1 boinc boinc       620 Oct 13 06:26 runtime_log
[2025-10-13 06:26:40] -rw------- 1 boinc boinc   1013760 Oct 13 06:26 result.tar.gz
[2025-10-13 06:26:40] -rw------- 1 boinc boinc       659 Oct 13 06:26 s0KNDmINES8n9Rq4apOajLDm4fhM0noT9bVof3QYDmQSUMDmQ9IzQm.diag
[2025-10-13 06:26:40] -rw-r--r-- 1 boinc boinc      8782 Oct 13 06:26 runtime_log.err
[2025-10-13 06:26:40] -rw-r--r-- 1 boinc boinc     10724 Oct 13 06:26 stderr.txt
[2025-10-13 06:26:40] HITS file was successfully produced:
[2025-10-13 06:26:40] -rw------- 1 boinc boinc 199046689 Oct 13 06:25 shared/HITS.pool.root.1
[2025-10-13 06:26:40]  *** Contents of shared directory: ***
[2025-10-13 06:26:40] total 410780
[2025-10-13 06:26:40] -rw-r--r-- 2 boinc boinc 219972596 Oct 13 05:00 ATLAS.root_0
[2025-10-13 06:26:40] -rw-r--r-- 2 boinc boinc    569682 Oct 13 05:00 input.tar.gz
[2025-10-13 06:26:40] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:00 start_atlas.sh
[2025-10-13 06:26:40] -rw------- 1 boinc boinc 199046689 Oct 13 06:25 HITS.pool.root.1
[2025-10-13 06:26:40] -rw------- 1 boinc boinc   1013760 Oct 13 06:26 result.tar.gz
06:26:42 (3340565): run_atlas exited; CPU time 14778.839098
06:26:42 (3340565): called boinc_finish(0)

</stderr_txt>
]]>

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