Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:06:08 (5841): wrapper (7.7.26015): starting
14:06:08 (5841): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 14:06:08] Arguments: --nthreads 8
[2025-10-12 14:06:08] Threads: 8
[2025-10-12 14:06:08] Checking for CVMFS
[2025-10-12 14:06:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:06:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:06:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:06:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:06:09] 2.11.2.0 13817 480897 274788 151631 3 3 9877931 18432000 2749 130560 8 209369281 99.519 263795028 24851 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-10-12 14:06:09] CVMFS is ok
[2025-10-12 14:06:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 14:06:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 14:06:09] Further information can be found at the LHC@home message board.
[2025-10-12 14:06:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:06:09] Checking for apptainer binary...
[2025-10-12 14:06:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:06:09] Running /usr/bin/apptainer --version
[2025-10-12 14:06:09] apptainer version 1.3.2-1.el7
[2025-10-12 14:06:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:06:09] c-9-29.aglt2.org
[2025-10-12 14:06:09] apptainer works
[2025-10-12 14:06:09] Set ATHENA_PROC_NUMBER=8
[2025-10-12 14:06:09] Set ATHENA_CORE_NUMBER=8
[2025-10-12 14:06:09] Starting ATLAS job with PandaID=6838990144
[2025-10-12 14:06:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:58:44]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:58:44] 2025-10-12 20:58:02,120 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 16:58:44] 2025-10-12 20:58:02,122 | INFO     | fitting pss+swap vs Time
[2025-10-12 16:58:44] 2025-10-12 20:58:02,122 | INFO     | sum of square deviations: 1496660620.0
[2025-10-12 16:58:44] 2025-10-12 20:58:02,123 | INFO     | sum of deviations: -19521879593.0
[2025-10-12 16:58:44] 2025-10-12 20:58:02,123 | INFO     | mean x: 1760297529.0
[2025-10-12 16:58:44] 2025-10-12 20:58:02,123 | INFO     | mean y: 2503663.7159763314
[2025-10-12 16:58:44] 2025-10-12 20:58:02,123 | INFO     | -- intersect: 22963164183.395733
[2025-10-12 16:58:44] 2025-10-12 20:58:02,123 | INFO     | intersect: 22963164183.395733
[2025-10-12 16:58:44] 2025-10-12 20:58:02,124 | INFO     | chi2: 2.2634492116013543
[2025-10-12 16:58:44] 2025-10-12 20:58:02,124 | INFO     | sum of square deviations: 1367709365.0
[2025-10-12 16:58:44] 2025-10-12 20:58:02,125 | INFO     | sum of deviations: -7748103063.0
[2025-10-12 16:58:44] 2025-10-12 20:58:02,125 | INFO     | mean x: 1760297376.5
[2025-10-12 16:58:44] 2025-10-12 20:58:02,125 | INFO     | mean y: 2517272.0
[2025-10-12 16:58:44] 2025-10-12 20:58:02,125 | INFO     | -- intersect: 9974639890.79227
[2025-10-12 16:58:44] 2025-10-12 20:58:02,125 | INFO     | intersect: 9974639890.79227
[2025-10-12 16:58:44] 2025-10-12 20:58:02,125 | INFO     | chi2: 1.4933426668376517
[2025-10-12 16:58:44] 2025-10-12 20:58:02,125 | INFO     | current chi2=1.4933426668376517 (change=34.02358404228847 %)
[2025-10-12 16:58:44] 2025-10-12 20:58:02,126 | INFO     | sum of square deviations: 1246386160.0
[2025-10-12 16:58:44] 2025-10-12 20:58:02,126 | INFO     | sum of deviations: -7322192217.999998
[2025-10-12 16:58:44] 2025-10-12 20:58:02,126 | INFO     | mean x: 1760297224.0
[2025-10-12 16:58:44] 2025-10-12 20:58:02,126 | INFO     | mean y: 2517807.5094339624
[2025-10-12 16:58:44] 2025-10-12 20:58:02,126 | INFO     | -- intersect: 10343802915.280367
[2025-10-12 16:58:44] 2025-10-12 20:58:02,127 | INFO     | intersect: 10343802915.280367
[2025-10-12 16:58:44] 2025-10-12 20:58:02,127 | INFO     | chi2: 1.4924917794491785
[2025-10-12 16:58:44] 2025-10-12 20:58:02,127 | INFO     | current chi2=1.4924917794491785 (change=0.0569787100689375 %)
[2025-10-12 16:58:44] 2025-10-12 20:58:02,127 | INFO     | right removable region: 158
[2025-10-12 16:58:44] 2025-10-12 20:58:02,127 | INFO     | sum of square deviations: 1367709365.0
[2025-10-12 16:58:44] 2025-10-12 20:58:02,128 | INFO     | sum of deviations: -42060665344.0
[2025-10-12 16:58:44] 2025-10-12 20:58:02,128 | INFO     | mean x: 1760297681.5
[2025-10-12 16:58:44] 2025-10-12 20:58:02,128 | INFO     | mean y: 2529892.536585366
[2025-10-12 16:58:44] 2025-10-12 20:58:02,128 | INFO     | -- intersect: 54136319995.955666
[2025-10-12 16:58:44] 2025-10-12 20:58:02,128 | INFO     | intersect: 54136319995.955666
[2025-10-12 16:58:44] 2025-10-12 20:58:02,128 | INFO     | chi2: 0.9341716415230904
[2025-10-12 16:58:44] 2025-10-12 20:58:02,129 | INFO     | current chi2=0.9341716415230904 (change=58.72796099267548 %)
[2025-10-12 16:58:44] 2025-10-12 20:58:02,129 | INFO     | sum of square deviations: 1246386160.0
[2025-10-12 16:58:44] 2025-10-12 20:58:02,129 | INFO     | sum of deviations: -37343618121.00001
[2025-10-12 16:58:44] 2025-10-12 20:58:02,130 | INFO     | mean x: 1760297834.0
[2025-10-12 16:58:44] 2025-10-12 20:58:02,130 | INFO     | mean y: 2523952.0566037735
[2025-10-12 16:58:44] 2025-10-12 20:58:02,130 | INFO     | -- intersect: 52743714605.29641
[2025-10-12 16:58:44] 2025-10-12 20:58:02,130 | INFO     | intersect: 52743714605.29641
[2025-10-12 16:58:44] 2025-10-12 20:58:02,130 | INFO     | chi2: 0.9310101256739971
[2025-10-12 16:58:44] 2025-10-12 20:58:02,130 | INFO     | current chi2=0.9310101256739971 (change=0.33842986754968357 %)
[2025-10-12 16:58:44] 2025-10-12 20:58:02,130 | INFO     | left removable region: 20
[2025-10-12 16:58:44] 2025-10-12 20:58:02,130 | INFO     | sum of square deviations: 814878534.5
[2025-10-12 16:58:44] 2025-10-12 20:58:02,131 | INFO     | sum of deviations: -14995321248.499998
[2025-10-12 16:58:44] 2025-10-12 20:58:02,131 | INFO     | mean x: 1760297803.5
[2025-10-12 16:58:44] 2025-10-12 20:58:02,131 | INFO     | mean y: 2525137.65942029
[2025-10-12 16:58:44] 2025-10-12 20:58:02,131 | INFO     | -- intersect: 32395366449.53401
[2025-10-12 16:58:44] 2025-10-12 20:58:02,131 | INFO     | intersect: 32395366449.53401
[2025-10-12 16:58:44] 2025-10-12 20:58:02,132 | INFO     | chi2: 0.10439203407525362
[2025-10-12 16:58:44] 2025-10-12 20:58:02,132 | INFO     | -- intersect: 32395366449.53401
[2025-10-12 16:58:44] 2025-10-12 20:58:02,132 | INFO     | current memory leak: -18.40 B/s (using 138 data points, chi2=0.10)
[2025-10-12 16:58:44] 2025-10-12 20:58:02,132 | INFO     | could have reported an average CPU frequency of 2999 MHz (9 samples)
[2025-10-12 16:58:44] 2025-10-12 20:58:02,132 | INFO     | ..............................
[2025-10-12 16:58:44] 2025-10-12 20:58:02,132 | INFO     | . Timing measurements:
[2025-10-12 16:58:44] 2025-10-12 20:58:02,132 | INFO     | . get job = 0 s
[2025-10-12 16:58:44] 2025-10-12 20:58:02,132 | INFO     | . initial setup = 2 s
[2025-10-12 16:58:44] 2025-10-12 20:58:02,133 | INFO     | . payload setup = 4 s
[2025-10-12 16:58:44] 2025-10-12 20:58:02,133 | INFO     | . stage-in = 0 s
[2025-10-12 16:58:44] 2025-10-12 20:58:02,133 | INFO     | . payload execution = 10271 s
[2025-10-12 16:58:44] 2025-10-12 20:58:02,133 | INFO     | . stage-out = 1 s
[2025-10-12 16:58:44] 2025-10-12 20:58:02,133 | INFO     | . log creation = 0 s
[2025-10-12 16:58:44] 2025-10-12 20:58:02,133 | INFO     | ..............................
[2025-10-12 16:58:44] 2025-10-12 20:58:02,197 | INFO     | 
[2025-10-12 16:58:44] 2025-10-12 20:58:02,197 | INFO     | job summary report
[2025-10-12 16:58:44] 2025-10-12 20:58:02,197 | INFO     | --------------------------------------------------
[2025-10-12 16:58:44] 2025-10-12 20:58:02,197 | INFO     | PanDA job id: 6838990144
[2025-10-12 16:58:44] 2025-10-12 20:58:02,198 | INFO     | task id: 46676269
[2025-10-12 16:58:44] 2025-10-12 20:58:02,198 | INFO     | errors: (none)
[2025-10-12 16:58:44] 2025-10-12 20:58:02,198 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 16:58:44] 2025-10-12 20:58:02,198 | INFO     | pilot state: finished 
[2025-10-12 16:58:44] 2025-10-12 20:58:02,198 | INFO     | transexitcode: 0
[2025-10-12 16:58:44] 2025-10-12 20:58:02,198 | INFO     | exeerrorcode: 0
[2025-10-12 16:58:44] 2025-10-12 20:58:02,198 | INFO     | exeerrordiag: 
[2025-10-12 16:58:44] 2025-10-12 20:58:02,198 | INFO     | exitcode: 0
[2025-10-12 16:58:44] 2025-10-12 20:58:02,198 | INFO     | exitmsg: OK
[2025-10-12 16:58:44] 2025-10-12 20:58:02,198 | INFO     | cpuconsumptiontime: 76517 s
[2025-10-12 16:58:44] 2025-10-12 20:58:02,198 | INFO     | nevents: 400
[2025-10-12 16:58:44] 2025-10-12 20:58:02,198 | INFO     | neventsw: 0
[2025-10-12 16:58:44] 2025-10-12 20:58:02,199 | INFO     | pid: 17194
[2025-10-12 16:58:44] 2025-10-12 20:58:02,199 | INFO     | pgrp: 17194
[2025-10-12 16:58:44] 2025-10-12 20:58:02,199 | INFO     | corecount: 8
[2025-10-12 16:58:44] 2025-10-12 20:58:02,199 | INFO     | event service: False
[2025-10-12 16:58:44] 2025-10-12 20:58:02,199 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 10279: 2377823, 10281: 2386877, 10286: 2387079}
[2025-10-12 16:58:44] 2025-10-12 20:58:02,199 | INFO     | --------------------------------------------------
[2025-10-12 16:58:44] 2025-10-12 20:58:02,199 | INFO     | 
[2025-10-12 16:58:44] 2025-10-12 20:58:02,199 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 16:58:44] 2025-10-12 20:58:02,212 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 16:58:44] 2025-10-12 20:58:02,213 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 16:58:44] 2025-10-12 20:58:02,213 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 16:58:44] 2025-10-12 20:58:02,213 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 16:58:44] 2025-10-12 20:58:02,213 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 16:58:44] 2025-10-12 20:58:02,213 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 16:58:44] 2025-10-12 20:58:02,213 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 16:58:44] 2025-10-12 20:58:02,213 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 16:58:44] 2025-10-12 20:58:02,213 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 16:58:44] 2025-10-12 20:58:02,213 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 16:58:44] 2025-10-12 20:58:02,213 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 16:58:44] 2025-10-12 20:58:02,214 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 16:58:44] 2025-10-12 20:58:02,214 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 16:58:44] 2025-10-12 20:58:02,214 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 16:58:44] 2025-10-12 20:58:02,214 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 16:58:44] 2025-10-12 20:58:02,214 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 16:58:44] 2025-10-12 20:58:02,214 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 16:58:44] 2025-10-12 20:58:02,214 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 16:58:44] 2025-10-12 20:58:02,214 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 16:58:44] 2025-10-12 20:58:02,215 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 16:58:44] 2025-10-12 20:58:02,215 | INFO     | job 6838990144 has completed (purged errors)
[2025-10-12 16:58:44] 2025-10-12 20:58:02,215 | INFO     | overall cleanup function is called
[2025-10-12 16:58:44] 2025-10-12 20:58:03,224 | INFO     | --- collectZombieJob: --- 10, [17194]
[2025-10-12 16:58:44] 2025-10-12 20:58:03,224 | INFO     | zombie collector waiting for pid 17194
[2025-10-12 16:58:44] 2025-10-12 20:58:03,225 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 16:58:44] 2025-10-12 20:58:03,225 | INFO     | collected zombie processes
[2025-10-12 16:58:44] 2025-10-12 20:58:03,225 | INFO     | will attempt to kill all subprocesses of pid=17194
[2025-10-12 16:58:44] 2025-10-12 20:58:03,457 | INFO     | process IDs to be killed: [17194] (in reverse order)
[2025-10-12 16:58:44] 2025-10-12 20:58:03,525 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 16:58:44] 2025-10-12 20:58:03,525 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 16:58:44] 2025-10-12 20:58:03,533 | INFO     | did not find any defunct processes belonging to 17194
[2025-10-12 16:58:44] 2025-10-12 20:58:03,540 | INFO     | did not find any defunct processes belonging to 17194
[2025-10-12 16:58:44] 2025-10-12 20:58:03,540 | INFO     | ready for new job
[2025-10-12 16:58:44] 2025-10-12 20:58:03,540 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:58:44] 2025-10-12 20:58:03,542 | INFO     | ***************************************
[2025-10-12 16:58:44] 2025-10-12 20:58:03,543 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 16:58:44] 2025-10-12 20:58:03,543 | INFO     | ***************************************
[2025-10-12 16:58:44] 2025-10-12 20:58:03,543 | INFO     | 
[2025-10-12 16:58:44] 2025-10-12 20:58:03,545 | INFO     | architecture information:
[2025-10-12 16:58:44] 2025-10-12 20:58:03,545 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:58:44] 2025-10-12 20:58:03,556 | INFO     | cat /etc/os-release:
[2025-10-12 16:58:44] NAME="CentOS Linux"
[2025-10-12 16:58:44] VERSION="7 (Core)"
[2025-10-12 16:58:44] ID="centos"
[2025-10-12 16:58:44] ID_LIKE="rhel fedora"
[2025-10-12 16:58:44] VERSION_ID="7"
[2025-10-12 16:58:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:58:44] ANSI_COLOR="0;31"
[2025-10-12 16:58:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:58:44] HOME_URL="https://www.centos.org/"
[2025-10-12 16:58:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:58:44] 
[2025-10-12 16:58:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:58:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:58:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:58:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:58:44] 
[2025-10-12 16:58:44] 2025-10-12 20:58:03,556 | INFO     | ***************************************
[2025-10-12 16:58:44] 2025-10-12 20:58:04,058 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 16:58:44] 2025-10-12 20:58:04,069 | INFO     | sufficient remaining disk space (104816705536 B)
[2025-10-12 16:58:44] 2025-10-12 20:58:04,069 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:58:44] 2025-10-12 20:58:04,069 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:58:44] 2025-10-12 20:58:04,069 | INFO     | update_server=False
[2025-10-12 16:58:44] 2025-10-12 20:58:04,069 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:58:44] 2025-10-12 20:58:04,070 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:58:44] 2025-10-12 20:58:04,171 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 16:58:44] 2025-10-12 20:58:04,172 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 16:58:44] 2025-10-12 20:58:04,172 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:58:44] 2025-10-12 20:58:04,172 | INFO     | will abort loop
[2025-10-12 16:58:44] 2025-10-12 20:58:04,566 | INFO     | all data control threads have been joined
[2025-10-12 16:58:44] 2025-10-12 20:58:04,989 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:58:44] 2025-10-12 20:58:05,074 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:58:44] 2025-10-12 20:58:05,075 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:58:44] 2025-10-12 20:58:05,124 | INFO     | all payload control threads have been joined
[2025-10-12 16:58:44] 2025-10-12 20:58:05,150 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:58:44] 2025-10-12 20:58:05,177 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:58:44] 2025-10-12 20:58:05,182 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:58:44] 2025-10-12 20:58:05,327 | INFO     | all job control threads have been joined
[2025-10-12 16:58:44] 2025-10-12 20:58:05,571 | INFO     | [data] control thread has finished
[2025-10-12 16:58:44] 2025-10-12 20:58:05,758 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:58:44] 2025-10-12 20:58:06,108 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:58:44] 2025-10-12 20:58:06,129 | INFO     | [payload] control thread has finished
[2025-10-12 16:58:44] 2025-10-12 20:58:06,297 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:58:44] 2025-10-12 20:58:06,332 | INFO     | [job] control thread has finished
[2025-10-12 16:58:44] 2025-10-12 20:58:06,354 | INFO     | [job] validate thread has finished
[2025-10-12 16:58:44] 2025-10-12 20:58:06,355 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:58:44] 2025-10-12 20:58:06,396 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:58:44] 2025-10-12 20:58:06,996 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:58:44] 2025-10-12 20:58:07,552 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:58:44] 2025-10-12 20:58:11,557 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:58:44] 2025-10-12 20:58:33,755 | INFO     | PID=9531 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 16:58:44] 2025-10-12 20:58:33,755 | INFO     | .. there are 4 such processes running
[2025-10-12 16:58:44] 2025-10-12 20:58:33,755 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:58:44] 2025-10-12 20:58:33,756 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:58:44] 2025-10-12 20:58:33,756 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:58:44] 2025-10-12 20:58:37,380 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:58:44] 2025-10-12 20:58:39,155 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139679575512896)>', '<ExcThread(monitor, started 139678762129152)>']
[2025-10-12 16:58:44] 2025-10-12 20:58:39,789 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:58:44] 2025-10-12 20:58:39,789 | INFO     | [monitor] control thread has ended
[2025-10-12 16:58:44] 2025-10-12 20:58:44,177 | INFO     | all workflow threads have been joined
[2025-10-12 16:58:44] 2025-10-12 20:58:44,177 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:58:44] 2025-10-12 20:58:44,177 | INFO     | traces error code: 0
[2025-10-12 16:58:44] 2025-10-12 20:58:44,178 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:58:44] 2025-10-12 20:58:44,286 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:58:44] 2025-10-12 20:58:44,288 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:58:44] 2025-10-12 20:58:44,290 [wrapper] pilotpid: 9531
[2025-10-12 16:58:44] 2025-10-12 20:58:44,292 [wrapper] Pilot exit status: 0
[2025-10-12 16:58:44] 2025-10-12 20:58:44,300 [wrapper] pandaids: 6838990144
[2025-10-12 16:58:44] 2025-10-12 20:58:44,341 [wrapper] cleanup supervisor_pilot 19611 9532
[2025-10-12 16:58:44] 2025-10-12 20:58:44,343 [wrapper] Test setup, not cleaning
[2025-10-12 16:58:44] 2025-10-12 20:58:44,346 [wrapper] apfmon messages muted
[2025-10-12 16:58:44] 2025-10-12 20:58:44,348 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:58:44] 2025-10-12 20:58:44,350 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:58:44]  *** Error codes and diagnostics ***
[2025-10-12 16:58:44]     "exeErrorCode": 0,
[2025-10-12 16:58:44]     "exeErrorDiag": "",
[2025-10-12 16:58:44]     "pilotErrorCode": 0,
[2025-10-12 16:58:44]     "pilotErrorDiag": "",
[2025-10-12 16:58:44]  *** Listing of results directory ***
[2025-10-12 16:58:44] total 412480
[2025-10-12 16:58:44] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 18:04 pilot3.tar.gz
[2025-10-12 16:58:44] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 18:10 queuedata.json
[2025-10-12 16:58:44] -rwx------ 1 boincer umatlas     36292 Oct 11 18:10 runpilot2-wrapper.sh
[2025-10-12 16:58:44] -rw-r--r-- 1 boincer umatlas       100 Oct 12 14:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:58:44] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 14:06 run_atlas
[2025-10-12 16:58:44] -rw-r--r-- 1 boincer umatlas       105 Oct 12 14:06 job.xml
[2025-10-12 16:58:44] -rw-r--r-- 2 boincer umatlas 219804493 Oct 12 14:06 EVNT.46676267._002646.pool.root.1
[2025-10-12 16:58:44] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 14:06 start_atlas.sh
[2025-10-12 16:58:44] drwxrwx--x 2 boincer umatlas      4096 Oct 12 14:06 shared
[2025-10-12 16:58:44] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 14:06 input.tar.gz
[2025-10-12 16:58:44] -rw-r--r-- 1 boincer umatlas         0 Oct 12 14:06 boinc_lockfile
[2025-10-12 16:58:44] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 14:06 pandaJob.out
[2025-10-12 16:58:44] -rw------- 1 boincer umatlas    975528 Oct 12 14:06 agis_schedconf.cvmfs.json
[2025-10-12 16:58:44] -rw------- 1 boincer umatlas   1560580 Oct 12 14:06 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:58:44] drwx------ 5 boincer umatlas      4096 Oct 12 14:06 pilot3
[2025-10-12 16:58:44] -rw-r--r-- 1 boincer umatlas      6035 Oct 12 16:48 init_data.xml
[2025-10-12 16:58:44] -rw------- 1 boincer umatlas 194997276 Oct 12 16:57 HITS.46676269._065865.pool.root.1
[2025-10-12 16:58:44] -rw-r--r-- 1 boincer umatlas       530 Oct 12 16:57 boinc_task_state.xml
[2025-10-12 16:58:44] -rw------- 1 boincer umatlas        95 Oct 12 16:57 pilot_heartbeat.json
[2025-10-12 16:58:44] -rw------- 1 boincer umatlas      1048 Oct 12 16:57 memory_monitor_summary.json
[2025-10-12 16:58:44] -rw------- 1 boincer umatlas    403140 Oct 12 16:57 log.46676269._065865.job.log.tgz.1
[2025-10-12 16:58:44] -rw------- 1 boincer umatlas      7837 Oct 12 16:58 heartbeat.json
[2025-10-12 16:58:44] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 16:58 boinc_mmap_file
[2025-10-12 16:58:44] -rw-r--r-- 1 boincer umatlas        28 Oct 12 16:58 wrapper_checkpoint.txt
[2025-10-12 16:58:44] -rw------- 1 boincer umatlas      5007 Oct 12 16:58 pilotlog.txt
[2025-10-12 16:58:44] -rw------- 1 boincer umatlas   1434112 Oct 12 16:58 log.46676269._065865.job.log.1
[2025-10-12 16:58:44] -rw------- 1 boincer umatlas       357 Oct 12 16:58 output.list
[2025-10-12 16:58:44] -rw-r--r-- 1 boincer umatlas       620 Oct 12 16:58 runtime_log
[2025-10-12 16:58:44] -rw------- 1 boincer umatlas   1853440 Oct 12 16:58 result.tar.gz
[2025-10-12 16:58:44] -rw-r--r-- 1 boincer umatlas      8694 Oct 12 16:58 runtime_log.err
[2025-10-12 16:58:44] -rw------- 1 boincer umatlas       659 Oct 12 16:58 n7yKDmpywR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdlhNDmfAQsCo.diag
[2025-10-12 16:58:44] -rw-r--r-- 1 boincer umatlas     20858 Oct 12 16:58 stderr.txt
[2025-10-12 16:58:44] HITS file was successfully produced:
[2025-10-12 16:58:44] -rw------- 1 boincer umatlas 194997276 Oct 12 16:57 shared/HITS.pool.root.1
[2025-10-12 16:58:44]  *** Contents of shared directory: ***
[2025-10-12 16:58:44] total 407476
[2025-10-12 16:58:44] -rw-r--r-- 2 boincer umatlas 219804493 Oct 12 14:06 ATLAS.root_0
[2025-10-12 16:58:44] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 14:06 start_atlas.sh
[2025-10-12 16:58:44] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 14:06 input.tar.gz
[2025-10-12 16:58:44] -rw------- 1 boincer umatlas 194997276 Oct 12 16:57 HITS.pool.root.1
[2025-10-12 16:58:44] -rw------- 1 boincer umatlas   1853440 Oct 12 16:58 result.tar.gz
16:58:46 (5841): run_atlas exited; CPU time 76747.995467
16:58:46 (5841): called boinc_finish(0)

</stderr_txt>
]]>

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