Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:44:34 (3505741): wrapper (7.7.26015): starting
03:44:34 (3505741): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 03:44:34] Arguments: --nthreads 12
[2025-10-13 03:44:34] Threads: 12
[2025-10-13 03:44:34] Checking for CVMFS
[2025-10-13 03:44:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 03:44:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 03:44:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 03:44:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 03:44:36] 2.13.2.0 8216 25691 254056 151643 2 477 29506515 46080000 53050 130560 0 174624836 99.895 48843164 22722 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-13 03:44:36] CVMFS is ok
[2025-10-13 03:44:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 03:44:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 03:44:36] Further information can be found at the LHC@home message board.
[2025-10-13 03:44:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 03:44:36] Checking for apptainer binary...
[2025-10-13 03:44:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 03:44:36] Running /usr/bin/apptainer --version
[2025-10-13 03:44:36] apptainer version 1.4.2-1.el9
[2025-10-13 03:44:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 03:44:37] mff2103.farm.particle.cz
[2025-10-13 03:44:37] apptainer works
[2025-10-13 03:44:37] Set ATHENA_PROC_NUMBER=12
[2025-10-13 03:44:37] Set ATHENA_CORE_NUMBER=12
[2025-10-13 03:44:37] Starting ATLAS job with PandaID=6839989501
[2025-10-13 03:44:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:02:17]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:02:17] 2025-10-13 02:58:37,336 | INFO     | time since job start (4363s) is within the limit (172800.0s)
[2025-10-13 05:02:17] 2025-10-13 02:58:37,547 | WARNING  | process 3531929 can no longer be monitored (due to stat problems) - aborting
[2025-10-13 05:02:17] 2025-10-13 02:58:37,548 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6839989501/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:02:17] 2025-10-13 02:58:37,549 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4438823 B
[2025-10-13 05:02:17] 2025-10-13 02:58:37,549 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15544 B
[2025-10-13 05:02:17] 2025-10-13 02:58:37,549 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2025-10-13 05:02:17] 2025-10-13 02:58:39,347 | INFO     | time since job start (4365s) is within the limit (172800.0s)
[2025-10-13 05:02:17] 2025-10-13 02:58:41,354 | INFO     | time since job start (4367s) is within the limit (172800.0s)
[2025-10-13 05:02:17] 2025-10-13 02:58:43,361 | INFO     | time since job start (4369s) is within the limit (172800.0s)
[2025-10-13 05:02:17] 2025-10-13 02:58:45,368 | INFO     | time since job start (4371s) is within the limit (172800.0s)
[2025-10-13 05:02:17] 2025-10-13 02:58:47,375 | INFO     | time since job start (4373s) is within the limit (172800.0s)
[2025-10-13 05:02:17] 2025-10-13 02:58:49,536 | INFO     | PID=3511677 has CPU usage=11.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-13 05:02:17] 2025-10-13 02:58:49,536 | INFO     | .. there are 83 such processes running
[2025-10-13 05:02:17] 2025-10-13 02:58:50,537 | INFO     | time since job start (4376s) is within the limit (172800.0s)
[2025-10-13 05:02:17] 2025-10-13 02:58:52,545 | INFO     | time since job start (4378s) is within the limit (172800.0s)
[2025-10-13 05:02:17] 2025-10-13 02:58:54,554 | INFO     | time since job start (4380s) is within the limit (172800.0s)
[2025-10-13 05:02:17] 2025-10-13 02:58:56,563 | INFO     | time since job start (4382s) is within the limit (172800.0s)
[2025-10-13 05:02:17] 2025-10-13 02:58:58,570 | INFO     | time since job start (4384s) is within the limit (172800.0s)
[2025-10-13 05:02:17] 2025-10-13 02:59:00,577 | INFO     | time since job start (4386s) is within the limit (172800.0s)
[2025-10-13 05:02:17] 2025-10-13 02:59:02,584 | INFO     | time since job start (4388s) is within the limit (172800.0s)
[2025-10-13 05:02:17] 2025-10-13 02:59:04,592 | INFO     | time since job start (4390s) is within the limit (172800.0s)
[2025-10-13 05:02:17] 2025-10-13 02:59:06,600 | INFO     | time since job start (4392s) is within the limit (172800.0s)
[2025-10-13 05:02:17] 2025-10-13 02:59:08,608 | INFO     | time since job start (4394s) is within the limit (172800.0s)
[2025-10-13 05:02:17] 2025-10-13 02:59:10,619 | INFO     | time since job start (4396s) is within the limit (172800.0s)
[2025-10-13 05:02:17] 2025-10-13 02:59:13,001 | INFO     | PID=3511677 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:02:17] 2025-10-13 02:59:13,001 | INFO     | .. there are 83 such processes running
[2025-10-13 05:02:17] 2025-10-13 02:59:13,856 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 05:02:17] 2025-10-13 02:59:13,893 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2858.487864583334
[2025-10-13 05:02:17] 2025-10-13 02:59:13,931 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6839989501/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 05:02:17] 2025-10-13 02:59:13,932 | INFO     | extracted standard info from prmon json
[2025-10-13 05:02:17] 2025-10-13 02:59:13,932 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 05:02:17] 2025-10-13 02:59:13,932 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 05:02:17] 2025-10-13 02:59:13,932 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:02:17] 2025-10-13 02:59:13,933 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:02:17] 2025-10-13 02:59:13,938 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:02:17] 2025-10-13 02:59:13,943 | INFO     | sum of square deviations: 73902826.98387094
[2025-10-13 05:02:17] 2025-10-13 02:59:13,943 | INFO     | sum of deviations: 2199012341.7741933
[2025-10-13 05:02:17] 2025-10-13 02:59:13,943 | INFO     | mean x: 1760322286.016129
[2025-10-13 05:02:17] 2025-10-13 02:59:13,943 | INFO     | mean y: 2655159.2258064514
[2025-10-13 05:02:17] 2025-10-13 02:59:13,943 | INFO     | -- intersect: -52376537767.91968
[2025-10-13 05:02:17] 2025-10-13 02:59:13,939 | INFO     | sufficient remaining disk space (1661125787648 B)
[2025-10-13 05:02:17] 2025-10-13 02:59:13,948 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-13 05:02:17] 2025-10-13 02:59:13,949 | INFO     | size of work directory /scratch/.boinc/slots/1/PanDA_Pilot-6839989501: 4732471 B (within 2537553920 B limit)
[2025-10-13 05:02:17] 2025-10-13 02:59:13,949 | INFO     | pfn file=/scratch/.boinc/slots/1/PanDA_Pilot-6839989501/HITS.46676269._078874.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-13 05:02:17] 2025-10-13 02:59:13,949 | INFO     | total size of present files: 0 B (workdir size: 4732471 B)
[2025-10-13 05:02:17] 2025-10-13 02:59:13,949 | INFO     | output file size check: skipping output file /scratch/.boinc/slots/1/PanDA_Pilot-6839989501/HITS.46676269._078874.pool.root.1 since it does not exist
[2025-10-13 05:02:17] 2025-10-13 02:59:13,943 | INFO     | intersect: -52376537767.91968
[2025-10-13 05:02:17] 2025-10-13 02:59:13,951 | INFO     | chi2: 0.16770782394230652
[2025-10-13 05:02:17] 2025-10-13 02:59:13,951 | INFO     | -- intersect: -52376537767.91968
[2025-10-13 05:02:17] 2025-10-13 02:59:13,951 | INFO     | current memory leak: 29.76 B/s (using 62 data points, chi2=0.17)
[2025-10-13 05:02:17] 2025-10-13 02:59:13,951 | INFO     | could have reported an average CPU frequency of 2898 MHz (6 samples)
[2025-10-13 05:02:17] 2025-10-13 02:59:13,952 | INFO     | ..............................
[2025-10-13 05:02:17] 2025-10-13 02:59:13,952 | INFO     | . Timing measurements:
[2025-10-13 05:02:17] 2025-10-13 02:59:13,952 | INFO     | . get job = 0 s
[2025-10-13 05:02:17] 2025-10-13 02:59:13,952 | INFO     | . initial setup = 4 s
[2025-10-13 05:02:17] 2025-10-13 02:59:13,952 | INFO     | . payload setup = 57 s
[2025-10-13 05:02:17] 2025-10-13 02:59:13,952 | INFO     | . stage-in = 0 s
[2025-10-13 05:02:17] 2025-10-13 02:59:13,956 | INFO     | . payload execution = 4218 s
[2025-10-13 05:02:17] 2025-10-13 02:59:13,957 | INFO     | . stage-out = 1 s
[2025-10-13 05:02:17] 2025-10-13 02:59:13,957 | INFO     | . log creation = 0 s
[2025-10-13 05:02:17] 2025-10-13 02:59:13,957 | INFO     | ..............................
[2025-10-13 05:02:17] 2025-10-13 02:59:14,011 | INFO     | time since job start (4400s) is within the limit (172800.0s)
[2025-10-13 05:02:17] 2025-10-13 02:59:14,205 | INFO     | 
[2025-10-13 05:02:17] 2025-10-13 02:59:14,212 | INFO     | job summary report
[2025-10-13 05:02:17] 2025-10-13 02:59:14,212 | INFO     | --------------------------------------------------
[2025-10-13 05:02:17] 2025-10-13 02:59:14,212 | INFO     | PanDA job id: 6839989501
[2025-10-13 05:02:17] 2025-10-13 02:59:14,212 | INFO     | task id: 46676269
[2025-10-13 05:02:17] 2025-10-13 02:59:14,213 | INFO     | errors: (none)
[2025-10-13 05:02:17] 2025-10-13 02:59:14,213 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:02:17] 2025-10-13 02:59:14,213 | INFO     | pilot state: finished 
[2025-10-13 05:02:17] 2025-10-13 02:59:14,213 | INFO     | transexitcode: 0
[2025-10-13 05:02:17] 2025-10-13 02:59:14,213 | INFO     | exeerrorcode: 0
[2025-10-13 05:02:17] 2025-10-13 02:59:14,213 | INFO     | exeerrordiag: 
[2025-10-13 05:02:17] 2025-10-13 02:59:14,213 | INFO     | exitcode: 0
[2025-10-13 05:02:17] 2025-10-13 02:59:14,213 | INFO     | exitmsg: OK
[2025-10-13 05:02:17] 2025-10-13 02:59:14,213 | INFO     | cpuconsumptiontime: 34306 s
[2025-10-13 05:02:17] 2025-10-13 02:59:14,213 | INFO     | nevents: 400
[2025-10-13 05:02:17] 2025-10-13 02:59:14,213 | INFO     | neventsw: 0
[2025-10-13 05:02:17] 2025-10-13 02:59:14,213 | INFO     | pid: 3531929
[2025-10-13 05:02:17] 2025-10-13 02:59:14,213 | INFO     | pgrp: 3531929
[2025-10-13 05:02:17] 2025-10-13 02:59:14,213 | INFO     | corecount: 12
[2025-10-13 05:02:17] 2025-10-13 02:59:14,213 | INFO     | event service: False
[2025-10-13 05:02:17] 2025-10-13 02:59:14,213 | INFO     | sizes: {0: 2348858, 11: 2348858, 22: 2348886, 33: 2349232, 43: 2349232, 4280: 2375317, 4281: 2375444, 4283: 2384500, 4284: 2384556, 4322: 2384778}
[2025-10-13 05:02:17] 2025-10-13 02:59:14,214 | INFO     | --------------------------------------------------
[2025-10-13 05:02:17] 2025-10-13 02:59:14,214 | INFO     | 
[2025-10-13 05:02:17] 2025-10-13 02:59:14,214 | INFO     | executing command: ls -lF /scratch/.boinc/slots/1
[2025-10-13 05:02:17] 2025-10-13 02:59:14,375 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:02:17] 2025-10-13 02:59:14,375 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:02:17] 2025-10-13 02:59:14,375 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:02:17] 2025-10-13 02:59:14,375 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:02:17] 2025-10-13 02:59:14,375 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:02:17] 2025-10-13 02:59:14,375 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:02:17] 2025-10-13 02:59:14,375 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:02:17] 2025-10-13 02:59:14,376 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:02:17] 2025-10-13 02:59:14,376 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:02:17] 2025-10-13 02:59:14,376 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:02:17] 2025-10-13 02:59:14,376 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:02:17] 2025-10-13 02:59:14,376 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:02:17] 2025-10-13 02:59:14,376 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:02:17] 2025-10-13 02:59:14,376 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:02:17] 2025-10-13 02:59:14,376 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:02:17] 2025-10-13 02:59:14,376 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:02:17] 2025-10-13 02:59:14,376 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:02:17] 2025-10-13 02:59:14,376 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:02:17] 2025-10-13 02:59:14,376 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:02:17] 2025-10-13 02:59:14,376 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:02:17] 2025-10-13 02:59:14,377 | INFO     | job 6839989501 has completed (purged errors)
[2025-10-13 05:02:17] 2025-10-13 02:59:14,377 | INFO     | overall cleanup function is called
[2025-10-13 05:02:17] 2025-10-13 02:59:14,902 | INFO     | number of running child processes to parent process 3531929: 1
[2025-10-13 05:02:17] 2025-10-13 02:59:14,902 | INFO     | maximum number of monitored processes: 6
[2025-10-13 05:02:17] 2025-10-13 02:59:14,902 | INFO     | aborting job monitoring since job object (job id=6839989501) has expired
[2025-10-13 05:02:17] 2025-10-13 02:59:15,403 | INFO     | --- collectZombieJob: --- 10, [3531929]
[2025-10-13 05:02:17] 2025-10-13 02:59:15,403 | INFO     | zombie collector waiting for pid 3531929
[2025-10-13 05:02:17] 2025-10-13 02:59:15,403 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:02:17] 2025-10-13 02:59:15,403 | INFO     | collected zombie processes
[2025-10-13 05:02:17] 2025-10-13 02:59:15,404 | INFO     | will attempt to kill all subprocesses of pid=3531929
[2025-10-13 05:02:17] 2025-10-13 02:59:16,291 | INFO     | process IDs to be killed: [3531929] (in reverse order)
[2025-10-13 05:02:17] 2025-10-13 02:59:16,776 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:02:17] 2025-10-13 02:59:16,776 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:02:17] 2025-10-13 02:59:16,819 | INFO     | did not find any defunct processes belonging to 3531929
[2025-10-13 05:02:17] 2025-10-13 02:59:16,853 | INFO     | did not find any defunct processes belonging to 3531929
[2025-10-13 05:02:17] 2025-10-13 02:59:16,854 | INFO     | ready for new job
[2025-10-13 05:02:17] 2025-10-13 02:59:16,854 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:02:17] 2025-10-13 02:59:16,855 | INFO     | ***************************************
[2025-10-13 05:02:17] 2025-10-13 02:59:16,855 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:02:17] 2025-10-13 02:59:16,855 | INFO     | ***************************************
[2025-10-13 05:02:17] 2025-10-13 02:59:16,855 | INFO     | 
[2025-10-13 05:02:17] 2025-10-13 02:59:16,869 | INFO     | architecture information:
[2025-10-13 05:02:17] 2025-10-13 02:59:16,873 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:02:17] 2025-10-13 02:59:17,005 | INFO     | cat /etc/os-release:
[2025-10-13 05:02:17] NAME="CentOS Linux"
[2025-10-13 05:02:17] VERSION="7 (Core)"
[2025-10-13 05:02:17] ID="centos"
[2025-10-13 05:02:17] ID_LIKE="rhel fedora"
[2025-10-13 05:02:17] VERSION_ID="7"
[2025-10-13 05:02:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:02:17] ANSI_COLOR="0;31"
[2025-10-13 05:02:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:02:17] HOME_URL="https://www.centos.org/"
[2025-10-13 05:02:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:02:17] 
[2025-10-13 05:02:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:02:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:02:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:02:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:02:17] 
[2025-10-13 05:02:17] 2025-10-13 02:59:17,005 | INFO     | ***************************************
[2025-10-13 05:02:17] 2025-10-13 02:59:17,510 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2025-10-13 05:02:17] 2025-10-13 02:59:17,588 | INFO     | sufficient remaining disk space (1661131030528 B)
[2025-10-13 05:02:17] 2025-10-13 02:59:17,588 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:02:17] 2025-10-13 02:59:17,589 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:02:17] 2025-10-13 02:59:17,589 | INFO     | update_server=False
[2025-10-13 05:02:17] 2025-10-13 02:59:17,589 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:02:17] 2025-10-13 02:59:17,678 | INFO     | all data control threads have been joined
[2025-10-13 05:02:17] 2025-10-13 02:59:17,857 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:02:17] 2025-10-13 02:59:18,414 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:02:17] 2025-10-13 02:59:18,414 | INFO     | aborting loop
[2025-10-13 05:02:17] 2025-10-13 02:59:18,483 | INFO     | all job control threads have been joined
[2025-10-13 05:02:17] 2025-10-13 02:59:18,576 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:02:17] 2025-10-13 02:59:18,594 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:02:17] 2025-10-13 02:59:18,684 | INFO     | [data] control thread has finished
[2025-10-13 05:02:17] 2025-10-13 02:59:18,772 | INFO     | all payload control threads have been joined
[2025-10-13 05:02:17] 2025-10-13 02:59:18,949 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:02:17] 2025-10-13 02:59:19,116 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:02:17] 2025-10-13 02:59:19,135 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:02:17] 2025-10-13 02:59:19,211 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:02:17] 2025-10-13 02:59:19,220 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:02:17] 2025-10-13 02:59:19,420 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:02:17] 2025-10-13 02:59:19,489 | INFO     | [job] control thread has finished
[2025-10-13 05:02:17] 2025-10-13 02:59:19,501 | INFO     | [job] validate thread has finished
[2025-10-13 05:02:17] 2025-10-13 02:59:19,673 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:02:17] 2025-10-13 02:59:19,775 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:02:17] 2025-10-13 02:59:19,779 | INFO     | [payload] control thread has finished
[2025-10-13 05:02:17] 2025-10-13 02:59:19,864 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:02:17] 2025-10-13 02:59:19,938 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:02:17] 2025-10-13 02:59:20,227 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:02:17] 2025-10-13 02:59:22,587 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:02:17] 2025-10-13 02:59:48,004 | INFO     | PID=3511677 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:02:17] 2025-10-13 02:59:48,004 | INFO     | .. there are 83 such processes running
[2025-10-13 05:02:17] 2025-10-13 02:59:48,004 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:02:17] 2025-10-13 02:59:48,004 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:02:17] 2025-10-13 02:59:48,004 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:02:17] 2025-10-13 03:00:01,238 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:02:17] 2025-10-13 03:00:01,783 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140258680268608)>', '<ExcThread(monitor, started 140258196846336)>']
[2025-10-13 05:02:17] 2025-10-13 03:00:02,084 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:02:17] 2025-10-13 03:00:02,085 | INFO     | [monitor] control thread has ended
[2025-10-13 05:02:17] 2025-10-13 03:00:06,808 | INFO     | all workflow threads have been joined
[2025-10-13 05:02:17] 2025-10-13 03:00:06,809 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:02:17] 2025-10-13 03:00:06,809 | INFO     | traces error code: 0
[2025-10-13 05:02:17] 2025-10-13 03:00:06,809 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:02:17] 2025-10-13 03:00:07,097 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:02:17] 2025-10-13 03:00:07,140 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:02:17] 2025-10-13 03:00:07,190 [wrapper] pilotpid: 3511677
[2025-10-13 05:02:17] 2025-10-13 03:00:07,198 [wrapper] Pilot exit status: 0
[2025-10-13 05:02:17] 2025-10-13 03:00:07,332 [wrapper] pandaids: 6839989501
[2025-10-13 05:02:17] 2025-10-13 03:00:07,790 [wrapper] cleanup supervisor_pilot 3690396 3511678
[2025-10-13 05:02:17] 2025-10-13 03:00:07,794 [wrapper] Test setup, not cleaning
[2025-10-13 05:02:17] 2025-10-13 03:00:07,798 [wrapper] apfmon messages muted
[2025-10-13 05:02:17] 2025-10-13 03:00:07,853 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:02:17] 2025-10-13 03:00:07,897 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:02:17]  *** Error codes and diagnostics ***
[2025-10-13 05:02:17]     "exeErrorCode": 0,
[2025-10-13 05:02:17]     "exeErrorDiag": "",
[2025-10-13 05:02:17]     "pilotErrorCode": 0,
[2025-10-13 05:02:17]     "pilotErrorDiag": "",
[2025-10-13 05:02:17]  *** Listing of results directory ***
[2025-10-13 05:02:17] total 407652
[2025-10-13 05:02:17] -rw-r--r-- 1 boinc boinc    557409 Oct 12 14:35 pilot3.tar.gz
[2025-10-13 05:02:17] -rwx------ 1 boinc boinc     36292 Oct 12 14:57 runpilot2-wrapper.sh
[2025-10-13 05:02:17] -rw-r--r-- 1 boinc boinc      5112 Oct 12 14:57 queuedata.json
[2025-10-13 05:02:17] -rw-r--r-- 1 boinc boinc       100 Oct 13 03:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:02:17] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 03:44 run_atlas
[2025-10-13 05:02:17] -rw-r--r-- 1 boinc boinc       105 Oct 13 03:44 job.xml
[2025-10-13 05:02:17] -rw-r--r-- 1 boinc boinc      6665 Oct 13 03:44 init_data.xml
[2025-10-13 05:02:17] -rw-r--r-- 2 boinc boinc 220252800 Oct 13 03:44 EVNT.46676267._003834.pool.root.1
[2025-10-13 05:02:17] -rw-r--r-- 2 boinc boinc     15120 Oct 13 03:44 start_atlas.sh
[2025-10-13 05:02:17] drwxrwx--x 2 boinc boinc      4096 Oct 13 03:44 shared
[2025-10-13 05:02:17] -rw-r--r-- 2 boinc boinc    569681 Oct 13 03:44 input.tar.gz
[2025-10-13 05:02:17] -rw-r--r-- 1 boinc boinc         0 Oct 13 03:44 boinc_lockfile
[2025-10-13 05:02:17] -rw-r--r-- 1 boinc boinc      2550 Oct 13 03:44 pandaJob.out
[2025-10-13 05:02:17] -rw------- 1 boinc boinc    975595 Oct 13 03:45 agis_schedconf.cvmfs.json
[2025-10-13 05:02:17] -rw------- 1 boinc boinc   1560580 Oct 13 03:45 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:02:17] drwx------ 5 boinc boinc      4096 Oct 13 03:45 pilot3
[2025-10-13 05:02:17] -rw------- 1 boinc boinc 191266022 Oct 13 04:57 HITS.46676269._078874.pool.root.1
[2025-10-13 05:02:17] -rw-r--r-- 1 boinc boinc       528 Oct 13 04:58 boinc_task_state.xml
[2025-10-13 05:02:17] -rw------- 1 boinc boinc      1021 Oct 13 04:58 memory_monitor_summary.json
[2025-10-13 05:02:17] -rw------- 1 boinc boinc    388633 Oct 13 04:58 log.46676269._078874.job.log.tgz.1
[2025-10-13 05:02:17] -rw------- 1 boinc boinc        95 Oct 13 04:59 pilot_heartbeat.json
[2025-10-13 05:02:17] -rw------- 1 boinc boinc      7779 Oct 13 04:59 heartbeat.json
[2025-10-13 05:02:17] -rw------- 1 boinc boinc      4827 Oct 13 05:00 pilotlog.txt
[2025-10-13 05:02:17] -rw------- 1 boinc boinc    619452 Oct 13 05:00 log.46676269._078874.job.log.1
[2025-10-13 05:02:17] -rw------- 1 boinc boinc       357 Oct 13 05:00 output.list
[2025-10-13 05:02:17] -rw-r--r-- 1 boinc boinc       620 Oct 13 05:00 runtime_log
[2025-10-13 05:02:17] -rw------- 1 boinc boinc   1024000 Oct 13 05:00 result.tar.gz
[2025-10-13 05:02:17] -rw-r--r-- 1 boinc boinc      8764 Oct 13 05:00 runtime_log.err
[2025-10-13 05:02:17] -rw------- 1 boinc boinc       663 Oct 13 05:00 MqzKDm4oAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkujNDmUzAyGo.diag
[2025-10-13 05:02:17] -rw-r--r-- 1 boinc boinc        25 Oct 13 05:02 wrapper_checkpoint.txt
[2025-10-13 05:02:17] -rw-r--r-- 1 boinc boinc      8192 Oct 13 05:02 boinc_mmap_file
[2025-10-13 05:02:17] -rw-r--r-- 1 boinc boinc     22591 Oct 13 05:02 stderr.txt
[2025-10-13 05:02:17] HITS file was successfully produced:
[2025-10-13 05:02:17] -rw------- 1 boinc boinc 191266022 Oct 13 04:57 shared/HITS.pool.root.1
[2025-10-13 05:02:17]  *** Contents of shared directory: ***
[2025-10-13 05:02:17] total 403460
[2025-10-13 05:02:17] -rw-r--r-- 2 boinc boinc 220252800 Oct 13 03:44 ATLAS.root_0
[2025-10-13 05:02:17] -rw-r--r-- 2 boinc boinc     15120 Oct 13 03:44 start_atlas.sh
[2025-10-13 05:02:17] -rw-r--r-- 2 boinc boinc    569681 Oct 13 03:44 input.tar.gz
[2025-10-13 05:02:17] -rw------- 1 boinc boinc 191266022 Oct 13 04:57 HITS.pool.root.1
[2025-10-13 05:02:17] -rw------- 1 boinc boinc   1024000 Oct 13 05:00 result.tar.gz
05:02:19 (3505741): run_atlas exited; CPU time 34496.697463
05:02:19 (3505741): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN