Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:42:44 (1257417): wrapper (7.7.26015): starting
05:42:44 (1257417): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 05:42:44] Arguments: --nthreads 4
[2025-10-13 05:42:44] Threads: 4
[2025-10-13 05:42:44] Checking for CVMFS
[2025-10-13 05:42:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:42:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:42:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:42:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:42:44] 2.9.2.0 3100 3600 96112 151647 2 57 31151434 36864001 0 130560 0 3273793 99.992 126878 727 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 05:42:44] CVMFS is ok
[2025-10-13 05:42:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:42:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:42:44] Further information can be found at the LHC@home message board.
[2025-10-13 05:42:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:42:44] Checking for apptainer binary...
[2025-10-13 05:42:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:42:44] Running /usr/bin/apptainer --version
[2025-10-13 05:42:44] apptainer version 1.4.1-1.1
[2025-10-13 05:42:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:42:44] thA338
[2025-10-13 05:42:44] apptainer works
[2025-10-13 05:42:44] Set ATHENA_PROC_NUMBER=4
[2025-10-13 05:42:44] Set ATHENA_CORE_NUMBER=4
[2025-10-13 05:42:44] Starting ATLAS job with PandaID=6839928387
[2025-10-13 05:42:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:56:06]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:56:06] 2025-10-13 04:55:34,635 | INFO     | process IDs to be killed: [1267781] (in reverse order)
[2025-10-13 06:56:06] 2025-10-13 04:55:34,666 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:56:06] 2025-10-13 04:55:34,666 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:56:06] 2025-10-13 04:55:34,668 | INFO     | did not find any defunct processes belonging to 1267781
[2025-10-13 06:56:06] 2025-10-13 04:55:34,669 | INFO     | did not find any defunct processes belonging to 1267781
[2025-10-13 06:56:06] 2025-10-13 04:55:34,669 | INFO     | ready for new job
[2025-10-13 06:56:06] 2025-10-13 04:55:34,669 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:56:06] 2025-10-13 04:55:34,670 | INFO     | ***************************************
[2025-10-13 06:56:06] 2025-10-13 04:55:34,670 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:56:06] 2025-10-13 04:55:34,670 | INFO     | ***************************************
[2025-10-13 06:56:06] 2025-10-13 04:55:34,670 | INFO     | 
[2025-10-13 06:56:06] 2025-10-13 04:55:34,671 | INFO     | architecture information:
[2025-10-13 06:56:06] 2025-10-13 04:55:34,671 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:56:06] 2025-10-13 04:55:34,684 | INFO     | cat /etc/os-release:
[2025-10-13 06:56:06] NAME="CentOS Linux"
[2025-10-13 06:56:06] VERSION="7 (Core)"
[2025-10-13 06:56:06] ID="centos"
[2025-10-13 06:56:06] ID_LIKE="rhel fedora"
[2025-10-13 06:56:06] VERSION_ID="7"
[2025-10-13 06:56:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:56:06] ANSI_COLOR="0;31"
[2025-10-13 06:56:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:56:06] HOME_URL="https://www.centos.org/"
[2025-10-13 06:56:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:56:06] 
[2025-10-13 06:56:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:56:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:56:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:56:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:56:06] 
[2025-10-13 06:56:06] 2025-10-13 04:55:34,684 | INFO     | ***************************************
[2025-10-13 06:56:06] 2025-10-13 04:55:35,187 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 06:56:06] 2025-10-13 04:55:35,204 | INFO     | sufficient remaining disk space (228069474304 B)
[2025-10-13 06:56:06] 2025-10-13 04:55:35,204 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:56:06] 2025-10-13 04:55:35,204 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:56:06] 2025-10-13 04:55:35,204 | INFO     | update_server=False
[2025-10-13 06:56:06] 2025-10-13 04:55:35,204 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:56:06] 2025-10-13 04:55:35,204 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:56:06] 2025-10-13 04:55:35,205 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:56:06] 2025-10-13 04:55:35,442 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 06:56:06] 2025-10-13 04:55:35,443 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 06:56:06] 2025-10-13 04:55:35,443 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:56:06] 2025-10-13 04:55:35,443 | INFO     | will abort loop
[2025-10-13 06:56:06] 2025-10-13 04:55:35,702 | INFO     | all data control threads have been joined
[2025-10-13 06:56:06] 2025-10-13 04:55:35,889 | INFO     | all payload control threads have been joined
[2025-10-13 06:56:06] 2025-10-13 04:55:36,210 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:36,210 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:36,309 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:56:06] 2025-10-13 04:55:36,426 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:36,448 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:36,581 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:36,684 | INFO     | all job control threads have been joined
[2025-10-13 06:56:06] 2025-10-13 04:55:36,701 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:36,707 | INFO     | [data] control thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:36,894 | INFO     | [payload] control thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:36,920 | INFO     | [job] validate thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:36,997 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:37,129 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:37,319 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:37,336 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:37,690 | INFO     | [job] control thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:38,315 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:39,211 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:56:06] 2025-10-13 04:55:56,876 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:56:06] 2025-10-13 04:55:58,522 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140516799260480)>', '<ExcThread(monitor, started 140516509316864)>']
[2025-10-13 06:56:06] 2025-10-13 04:56:03,548 | INFO     | all workflow threads have been joined
[2025-10-13 06:56:06] 2025-10-13 04:56:03,548 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:56:06] 2025-10-13 04:56:03,548 | INFO     | traces error code: 0
[2025-10-13 06:56:06] 2025-10-13 04:56:03,549 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:56:06] 2025-10-13 04:56:06,280 | INFO     | PID=1261209 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 06:56:06] 2025-10-13 04:56:06,280 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:56:06] 2025-10-13 04:56:06,280 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:56:06] 2025-10-13 04:56:06,280 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:56:06] 2025-10-13 04:56:06,280 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:56:06] 2025-10-13 04:56:06,280 | INFO     | [monitor] control thread has ended
[2025-10-13 06:56:06] 2025-10-13 04:56:06,355 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:56:06] 2025-10-13 04:56:06,359 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:56:06] 2025-10-13 04:56:06,363 [wrapper] pilotpid: 1261209
[2025-10-13 06:56:06] 2025-10-13 04:56:06,367 [wrapper] Pilot exit status: 0
[2025-10-13 06:56:06] 2025-10-13 04:56:06,378 [wrapper] pandaids: 6839928387
[2025-10-13 06:56:06] 2025-10-13 04:56:06,398 [wrapper] cleanup supervisor_pilot 1277899 1261210
[2025-10-13 06:56:06] 2025-10-13 04:56:06,402 [wrapper] Test setup, not cleaning
[2025-10-13 06:56:06] 2025-10-13 04:56:06,406 [wrapper] apfmon messages muted
[2025-10-13 06:56:06] 2025-10-13 04:56:06,410 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:56:06] 2025-10-13 04:56:06,414 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:56:06]  *** Error codes and diagnostics ***
[2025-10-13 06:56:06]     "exeErrorCode": 0,
[2025-10-13 06:56:06]     "exeErrorDiag": "",
[2025-10-13 06:56:06]     "pilotErrorCode": 0,
[2025-10-13 06:56:06]     "pilotErrorDiag": "",
[2025-10-13 06:56:06]  *** Listing of results directory ***
[2025-10-13 06:56:06] total 414988
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc      5112 Oct 12 14:07 queuedata.json
[2025-10-13 06:56:06] -rwx------ 1 boinc boinc     36292 Oct 12 14:10 runpilot2-wrapper.sh
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc    557409 Oct 12 14:10 pilot3.tar.gz
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc       100 Oct 13 05:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:56:06] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 05:42 run_atlas
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc       105 Oct 13 05:42 job.xml
[2025-10-13 06:56:06] -rw-r--r-- 2 boinc boinc 223226424 Oct 13 05:42 EVNT.46676267._003736.pool.root.1
[2025-10-13 06:56:06] drwxrwx--x 2 boinc boinc      4096 Oct 13 05:42 shared
[2025-10-13 06:56:06] -rw-r--r-- 2 boinc boinc    569676 Oct 13 05:42 input.tar.gz
[2025-10-13 06:56:06] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:42 start_atlas.sh
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc         0 Oct 13 05:42 boinc_setup_complete
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc      6375 Oct 13 05:42 init_data.xml
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc         0 Oct 13 05:42 boinc_lockfile
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc      2549 Oct 13 05:42 pandaJob.out
[2025-10-13 06:56:06] -rw------- 1 boinc boinc    974373 Oct 13 05:42 agis_schedconf.cvmfs.json
[2025-10-13 06:56:06] -rw------- 1 boinc boinc   1560580 Oct 13 05:42 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:56:06] drwx------ 5 boinc boinc      4096 Oct 13 05:42 pilot3
[2025-10-13 06:56:06] -rw------- 1 boinc boinc 195992199 Oct 13 06:55 HITS.46676269._077826.pool.root.1
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc       529 Oct 13 06:55 boinc_task_state.xml
[2025-10-13 06:56:06] -rw------- 1 boinc boinc        95 Oct 13 06:55 pilot_heartbeat.json
[2025-10-13 06:56:06] -rw------- 1 boinc boinc      1023 Oct 13 06:55 memory_monitor_summary.json
[2025-10-13 06:56:06] -rw------- 1 boinc boinc    273557 Oct 13 06:55 log.46676269._077826.job.log.tgz.1
[2025-10-13 06:56:06] -rw------- 1 boinc boinc      7767 Oct 13 06:55 heartbeat.json
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc        27 Oct 13 06:55 wrapper_checkpoint.txt
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc      8192 Oct 13 06:55 boinc_mmap_file
[2025-10-13 06:56:06] -rw------- 1 boinc boinc       747 Oct 13 06:56 pilotlog.txt
[2025-10-13 06:56:06] -rw------- 1 boinc boinc    647391 Oct 13 06:56 log.46676269._077826.job.log.1
[2025-10-13 06:56:06] -rw------- 1 boinc boinc       357 Oct 13 06:56 output.list
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc       620 Oct 13 06:56 runtime_log
[2025-10-13 06:56:06] -rw------- 1 boinc boinc    942080 Oct 13 06:56 result.tar.gz
[2025-10-13 06:56:06] -rw------- 1 boinc boinc       658 Oct 13 06:56 zj2LDm449R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmSijNDm5lkO4m.diag
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc      8777 Oct 13 06:56 runtime_log.err
[2025-10-13 06:56:06] -rw-r--r-- 1 boinc boinc     10310 Oct 13 06:56 stderr.txt
[2025-10-13 06:56:06] HITS file was successfully produced:
[2025-10-13 06:56:06] -rw------- 1 boinc boinc 195992199 Oct 13 06:55 shared/HITS.pool.root.1
[2025-10-13 06:56:06]  *** Contents of shared directory: ***
[2025-10-13 06:56:06] total 410900
[2025-10-13 06:56:06] -rw-r--r-- 2 boinc boinc 223226424 Oct 13 05:42 ATLAS.root_0
[2025-10-13 06:56:06] -rw-r--r-- 2 boinc boinc    569676 Oct 13 05:42 input.tar.gz
[2025-10-13 06:56:06] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:42 start_atlas.sh
[2025-10-13 06:56:06] -rw------- 1 boinc boinc 195992199 Oct 13 06:55 HITS.pool.root.1
[2025-10-13 06:56:06] -rw------- 1 boinc boinc    942080 Oct 13 06:56 result.tar.gz
06:56:08 (1257417): run_atlas exited; CPU time 16423.044843
06:56:08 (1257417): called boinc_finish(0)

</stderr_txt>
]]>

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