Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:17:00 (3704804): wrapper (7.7.26015): starting
05:17:00 (3704804): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 05:17:00] Arguments: --nthreads 4
[2025-10-13 05:17:00] Threads: 4
[2025-10-13 05:17:00] Checking for CVMFS
[2025-10-13 05:17:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:17:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:17:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:17:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:17:01] 2.9.2.0 2829015 2262 91176 151645 0 57 29797144 36864001 0 130560 0 2321350 99.993 80076 716 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 05:17:01] CVMFS is ok
[2025-10-13 05:17:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:17:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:17:01] Further information can be found at the LHC@home message board.
[2025-10-13 05:17:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:17:01] Checking for apptainer binary...
[2025-10-13 05:17:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:17:01] Running /usr/bin/apptainer --version
[2025-10-13 05:17:01] apptainer version 1.4.1-1.1
[2025-10-13 05:17:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:17:01] thA369a
[2025-10-13 05:17:01] apptainer works
[2025-10-13 05:17:01] Set ATHENA_PROC_NUMBER=4
[2025-10-13 05:17:01] Set ATHENA_CORE_NUMBER=4
[2025-10-13 05:17:01] Starting ATLAS job with PandaID=6840390879
[2025-10-13 05:17:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:19:17]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:19:17] 2025-10-13 04:18:36,388 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 06:19:17] 2025-10-13 04:18:36,388 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 06:19:17] 2025-10-13 04:18:36,388 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 06:19:17] 2025-10-13 04:18:36,388 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 06:19:17] 2025-10-13 04:18:36,388 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:19:17] 2025-10-13 04:18:36,388 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:19:17] 2025-10-13 04:18:36,388 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:19:17] 2025-10-13 04:18:36,388 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:19:17] 2025-10-13 04:18:36,388 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:19:17] 2025-10-13 04:18:36,388 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:19:17] 2025-10-13 04:18:36,389 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:19:17] 2025-10-13 04:18:36,389 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:19:17] 2025-10-13 04:18:36,389 | INFO     | job 6840390879 has completed (purged errors)
[2025-10-13 06:19:17] 2025-10-13 04:18:36,389 | INFO     | overall cleanup function is called
[2025-10-13 06:19:17] 2025-10-13 04:18:37,395 | INFO     | --- collectZombieJob: --- 10, [3715116]
[2025-10-13 06:19:17] 2025-10-13 04:18:37,395 | INFO     | zombie collector waiting for pid 3715116
[2025-10-13 06:19:17] 2025-10-13 04:18:37,396 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:19:17] 2025-10-13 04:18:37,396 | INFO     | collected zombie processes
[2025-10-13 06:19:17] 2025-10-13 04:18:37,396 | INFO     | will attempt to kill all subprocesses of pid=3715116
[2025-10-13 06:19:17] 2025-10-13 04:18:37,439 | INFO     | process IDs to be killed: [3715116] (in reverse order)
[2025-10-13 06:19:17] 2025-10-13 04:18:37,465 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:19:17] 2025-10-13 04:18:37,465 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:19:17] 2025-10-13 04:18:37,466 | INFO     | did not find any defunct processes belonging to 3715116
[2025-10-13 06:19:17] 2025-10-13 04:18:37,467 | INFO     | did not find any defunct processes belonging to 3715116
[2025-10-13 06:19:17] 2025-10-13 04:18:37,467 | INFO     | ready for new job
[2025-10-13 06:19:17] 2025-10-13 04:18:37,467 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:19:17] 2025-10-13 04:18:37,468 | INFO     | ***************************************
[2025-10-13 06:19:17] 2025-10-13 04:18:37,468 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:19:17] 2025-10-13 04:18:37,468 | INFO     | ***************************************
[2025-10-13 06:19:17] 2025-10-13 04:18:37,468 | INFO     | 
[2025-10-13 06:19:17] 2025-10-13 04:18:37,468 | INFO     | architecture information:
[2025-10-13 06:19:17] 2025-10-13 04:18:37,468 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:19:17] 2025-10-13 04:18:37,477 | INFO     | cat /etc/os-release:
[2025-10-13 06:19:17] NAME="CentOS Linux"
[2025-10-13 06:19:17] VERSION="7 (Core)"
[2025-10-13 06:19:17] ID="centos"
[2025-10-13 06:19:17] ID_LIKE="rhel fedora"
[2025-10-13 06:19:17] VERSION_ID="7"
[2025-10-13 06:19:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:19:17] ANSI_COLOR="0;31"
[2025-10-13 06:19:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:19:17] HOME_URL="https://www.centos.org/"
[2025-10-13 06:19:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:19:17] 
[2025-10-13 06:19:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:19:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:19:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:19:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:19:17] 
[2025-10-13 06:19:17] 2025-10-13 04:18:37,477 | INFO     | ***************************************
[2025-10-13 06:19:17] 2025-10-13 04:18:37,981 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 06:19:17] 2025-10-13 04:18:37,993 | INFO     | sufficient remaining disk space (229236539392 B)
[2025-10-13 06:19:17] 2025-10-13 04:18:37,993 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:19:17] 2025-10-13 04:18:37,994 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:19:17] 2025-10-13 04:18:37,994 | INFO     | update_server=False
[2025-10-13 06:19:17] 2025-10-13 04:18:37,994 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:19:17] 2025-10-13 04:18:37,994 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:19:17] 2025-10-13 04:18:37,994 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:19:17] 2025-10-13 04:18:37,994 | INFO     | aborting loop
[2025-10-13 06:19:17] 2025-10-13 04:18:38,323 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:19:17] 2025-10-13 04:18:38,476 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:19:17] 2025-10-13 04:18:38,670 | INFO     | all job control threads have been joined
[2025-10-13 06:19:17] 2025-10-13 04:18:38,999 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:19:17] 2025-10-13 04:18:39,000 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:19:17] 2025-10-13 04:18:39,000 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:19:17] 2025-10-13 04:18:39,050 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:19:17] 2025-10-13 04:18:39,050 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:19:17] 2025-10-13 04:18:39,069 | INFO     | all data control threads have been joined
[2025-10-13 06:19:17] 2025-10-13 04:18:39,174 | INFO     | all payload control threads have been joined
[2025-10-13 06:19:17] 2025-10-13 04:18:39,220 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:19:17] 2025-10-13 04:18:39,676 | INFO     | [job] control thread has finished
[2025-10-13 06:19:17] 2025-10-13 04:18:39,767 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:19:17] 2025-10-13 04:18:39,991 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:19:17] 2025-10-13 04:18:40,050 | INFO     | [job] validate thread has finished
[2025-10-13 06:19:17] 2025-10-13 04:18:40,050 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:19:17] 2025-10-13 04:18:40,074 | INFO     | [data] control thread has finished
[2025-10-13 06:19:17] 2025-10-13 04:18:40,179 | INFO     | [payload] control thread has finished
[2025-10-13 06:19:17] 2025-10-13 04:18:40,293 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:19:17] 2025-10-13 04:18:40,329 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:19:17] 2025-10-13 04:18:42,483 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:19:17] 2025-10-13 04:19:08,306 | INFO     | PID=3708576 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 06:19:17] 2025-10-13 04:19:08,306 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:19:17] 2025-10-13 04:19:08,306 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:19:17] 2025-10-13 04:19:08,306 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:19:17] 2025-10-13 04:19:11,076 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:19:17] 2025-10-13 04:19:12,036 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139975413253952)>', '<ExcThread(monitor, started 139974796113664)>']
[2025-10-13 06:19:17] 2025-10-13 04:19:12,327 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:19:17] 2025-10-13 04:19:12,327 | INFO     | [monitor] control thread has ended
[2025-10-13 06:19:17] 2025-10-13 04:19:17,061 | INFO     | all workflow threads have been joined
[2025-10-13 06:19:17] 2025-10-13 04:19:17,061 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:19:17] 2025-10-13 04:19:17,061 | INFO     | traces error code: 0
[2025-10-13 06:19:17] 2025-10-13 04:19:17,061 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:19:17] 2025-10-13 04:19:17,114 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:19:17] 2025-10-13 04:19:17,117 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:19:17] 2025-10-13 04:19:17,119 [wrapper] pilotpid: 3708576
[2025-10-13 06:19:17] 2025-10-13 04:19:17,122 [wrapper] Pilot exit status: 0
[2025-10-13 06:19:17] 2025-10-13 04:19:17,129 [wrapper] pandaids: 6840390879
[2025-10-13 06:19:17] 2025-10-13 04:19:17,145 [wrapper] cleanup supervisor_pilot 3724480 3708577
[2025-10-13 06:19:17] 2025-10-13 04:19:17,148 [wrapper] Test setup, not cleaning
[2025-10-13 06:19:17] 2025-10-13 04:19:17,150 [wrapper] apfmon messages muted
[2025-10-13 06:19:17] 2025-10-13 04:19:17,153 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:19:17] 2025-10-13 04:19:17,155 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:19:17]  *** Error codes and diagnostics ***
[2025-10-13 06:19:17]     "exeErrorCode": 0,
[2025-10-13 06:19:17]     "exeErrorDiag": "",
[2025-10-13 06:19:17]     "pilotErrorCode": 0,
[2025-10-13 06:19:17]     "pilotErrorDiag": "",
[2025-10-13 06:19:17]  *** Listing of results directory ***
[2025-10-13 06:19:17] total 412456
[2025-10-13 06:19:17] -rw-r--r-- 1 boinc boinc    557409 Oct 12 18:01 pilot3.tar.gz
[2025-10-13 06:19:17] -rw-r--r-- 1 boinc boinc      5112 Oct 12 18:32 queuedata.json
[2025-10-13 06:19:17] -rwx------ 1 boinc boinc     36292 Oct 12 18:33 runpilot2-wrapper.sh
[2025-10-13 06:19:17] -rw-r--r-- 1 boinc boinc       100 Oct 13 05:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:19:17] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 05:17 run_atlas
[2025-10-13 06:19:17] -rw-r--r-- 1 boinc boinc       105 Oct 13 05:17 job.xml
[2025-10-13 06:19:17] -rw-r--r-- 2 boinc boinc 223374255 Oct 13 05:17 EVNT.46676267._004748.pool.root.1
[2025-10-13 06:19:17] drwxrwx--x 2 boinc boinc      4096 Oct 13 05:17 shared
[2025-10-13 06:19:17] -rw-r--r-- 2 boinc boinc    569679 Oct 13 05:17 input.tar.gz
[2025-10-13 06:19:17] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:17 start_atlas.sh
[2025-10-13 06:19:17] -rw-r--r-- 1 boinc boinc         0 Oct 13 05:17 boinc_setup_complete
[2025-10-13 06:19:17] -rw-r--r-- 1 boinc boinc      6443 Oct 13 05:17 init_data.xml
[2025-10-13 06:19:17] -rw-r--r-- 1 boinc boinc         0 Oct 13 05:17 boinc_lockfile
[2025-10-13 06:19:17] -rw-r--r-- 1 boinc boinc      2550 Oct 13 05:17 pandaJob.out
[2025-10-13 06:19:17] -rw------- 1 boinc boinc    974373 Oct 13 05:17 agis_schedconf.cvmfs.json
[2025-10-13 06:19:17] -rw------- 1 boinc boinc   1560580 Oct 13 05:17 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:19:17] drwx------ 5 boinc boinc      4096 Oct 13 05:17 pilot3
[2025-10-13 06:19:17] -rw-r--r-- 1 boinc boinc       529 Oct 13 06:18 boinc_task_state.xml
[2025-10-13 06:19:17] -rw------- 1 boinc boinc 193469945 Oct 13 06:18 HITS.46676269._083651.pool.root.1
[2025-10-13 06:19:17] -rw------- 1 boinc boinc        95 Oct 13 06:18 pilot_heartbeat.json
[2025-10-13 06:19:17] -rw------- 1 boinc boinc      1015 Oct 13 06:18 memory_monitor_summary.json
[2025-10-13 06:19:17] -rw------- 1 boinc boinc    255612 Oct 13 06:18 log.46676269._083651.job.log.tgz.1
[2025-10-13 06:19:17] -rw------- 1 boinc boinc      7748 Oct 13 06:18 heartbeat.json
[2025-10-13 06:19:17] -rw-r--r-- 1 boinc boinc      8192 Oct 13 06:19 boinc_mmap_file
[2025-10-13 06:19:17] -rw-r--r-- 1 boinc boinc        27 Oct 13 06:19 wrapper_checkpoint.txt
[2025-10-13 06:19:17] -rw------- 1 boinc boinc      4752 Oct 13 06:19 pilotlog.txt
[2025-10-13 06:19:17] -rw------- 1 boinc boinc    556027 Oct 13 06:19 log.46676269._083651.job.log.1
[2025-10-13 06:19:17] -rw------- 1 boinc boinc       357 Oct 13 06:19 output.list
[2025-10-13 06:19:17] -rw-r--r-- 1 boinc boinc       620 Oct 13 06:19 runtime_log
[2025-10-13 06:19:17] -rw------- 1 boinc boinc    829440 Oct 13 06:19 result.tar.gz
[2025-10-13 06:19:17] -rw------- 1 boinc boinc       659 Oct 13 06:19 wf6LDmXBES8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2ekNDmfT5Ylm.diag
[2025-10-13 06:19:17] -rw-r--r-- 1 boinc boinc      8782 Oct 13 06:19 runtime_log.err
[2025-10-13 06:19:17] -rw-r--r-- 1 boinc boinc     12034 Oct 13 06:19 stderr.txt
[2025-10-13 06:19:17] HITS file was successfully produced:
[2025-10-13 06:19:17] -rw------- 1 boinc boinc 193469945 Oct 13 06:18 shared/HITS.pool.root.1
[2025-10-13 06:19:17]  *** Contents of shared directory: ***
[2025-10-13 06:19:17] total 408472
[2025-10-13 06:19:17] -rw-r--r-- 2 boinc boinc 223374255 Oct 13 05:17 ATLAS.root_0
[2025-10-13 06:19:17] -rw-r--r-- 2 boinc boinc    569679 Oct 13 05:17 input.tar.gz
[2025-10-13 06:19:17] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:17 start_atlas.sh
[2025-10-13 06:19:17] -rw------- 1 boinc boinc 193469945 Oct 13 06:18 HITS.pool.root.1
[2025-10-13 06:19:17] -rw------- 1 boinc boinc    829440 Oct 13 06:19 result.tar.gz
06:19:18 (3704804): run_atlas exited; CPU time 13803.233622
06:19:18 (3704804): called boinc_finish(0)

</stderr_txt>
]]>

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