Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:50:09 (29402): wrapper (7.7.26015): starting
13:50:09 (29402): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 13:50:09] Arguments: --nthreads 8
[2025-10-12 13:50:09] Threads: 8
[2025-10-12 13:50:09] Checking for CVMFS
[2025-10-12 13:50:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 13:50:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 13:50:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 13:50:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 13:50:09] 2.11.2.0 3213 628140 247016 151630 2 18 10912957 20275200 917 130560 1 359614506 99.992 26075165 20177 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 13:50:09] CVMFS is ok
[2025-10-12 13:50:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 13:50:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 13:50:09] Further information can be found at the LHC@home message board.
[2025-10-12 13:50:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 13:50:09] Checking for apptainer binary...
[2025-10-12 13:50:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 13:50:09] Running /usr/bin/apptainer --version
[2025-10-12 13:50:09] apptainer version 1.3.2-1.el7
[2025-10-12 13:50:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 13:50:10] c-205-38.aglt2.org
[2025-10-12 13:50:10] apptainer works
[2025-10-12 13:50:10] Set ATHENA_PROC_NUMBER=8
[2025-10-12 13:50:10] Set ATHENA_CORE_NUMBER=8
[2025-10-12 13:50:10] Starting ATLAS job with PandaID=6839990780
[2025-10-12 13:50:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 14:43:30]  *** The last 200 lines of the pilot log: ***
[2025-10-12 14:43:30]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 14:43:30]  replicas=None
[2025-10-12 14:43:30]  scope=mc23_13p6TeV
[2025-10-12 14:43:30]  status=None
[2025-10-12 14:43:30]  status_code=0
[2025-10-12 14:43:30]  storage_token=
[2025-10-12 14:43:30]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839990780/log.46676269._079216.job.log.tgz.1
[2025-10-12 14:43:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f4/26/log.46676269._079216.job.log.tgz.1
[2025-10-12 14:43:30]  workdir=None
[2025-10-12 14:43:30] ]
[2025-10-12 14:43:30] 2025-10-12 18:42:54,276 | INFO     | transferring file log.46676269._079216.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839990780/log.46676269._079216.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 14:43:30] 2025-10-12 18:42:54,276 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839990780/log.46676269._079216.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._079216.job
[2025-10-12 14:43:30] 2025-10-12 18:42:54,296 | INFO     | adding to output.list: log.46676269._079216.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f4/26/log.46676269._079216.job.log.tg
[2025-10-12 14:43:30] 2025-10-12 18:42:54,297 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 14:43:30] 2025-10-12 18:42:54,297 | INFO     | summary of transferred files:
[2025-10-12 14:43:30] 2025-10-12 18:42:54,297 | INFO     |  -- lfn=log.46676269._079216.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 14:43:30] 2025-10-12 18:42:54,297 | INFO     | stage-out finished correctly
[2025-10-12 14:43:30] 2025-10-12 18:42:55,511 | INFO     | time since job start (3157s) is within the limit (172800.0s)
[2025-10-12 14:43:30] 2025-10-12 18:42:55,766 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 14:43:30] 2025-10-12 18:42:56,131 | INFO     | job 6839990780 has state=finished
[2025-10-12 14:43:30] 2025-10-12 18:42:56,132 | INFO     | preparing for final server update for job 6839990780 in state='finished'
[2025-10-12 14:43:30] 2025-10-12 18:42:56,193 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 14:43:30] 2025-10-12 18:42:56,193 | INFO     | this job has now completed (state=finished)
[2025-10-12 14:43:30] 2025-10-12 18:42:56,194 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 14:43:30] 2025-10-12 18:42:56,194 | INFO     | log transfer has been attempted: DONE
[2025-10-12 14:43:30] 2025-10-12 18:42:56,194 | INFO     | job 6839990780 has finished - writing final server update
[2025-10-12 14:43:30] 2025-10-12 18:42:56,194 | INFO     | total number of processed events: 400 (read)
[2025-10-12 14:43:30] 2025-10-12 18:42:56,195 | INFO     | executing command: lscpu
[2025-10-12 14:43:30] 2025-10-12 18:42:56,223 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 14:43:30] 2025-10-12 18:42:57,517 | INFO     | time since job start (3159s) is within the limit (172800.0s)
[2025-10-12 14:43:30] 2025-10-12 18:42:59,089 | WARNING  | process 7483 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 14:43:30] 2025-10-12 18:42:59,089 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839990780/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 14:43:30] 2025-10-12 18:42:59,137 | INFO     | number of running child processes to parent process 7483: 1
[2025-10-12 14:43:30] 2025-10-12 18:42:59,137 | INFO     | maximum number of monitored processes: 6
[2025-10-12 14:43:30] 2025-10-12 18:42:59,376 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 14:43:30] 2025-10-12 18:42:59,379 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 1789.5503124999998
[2025-10-12 14:43:30] 2025-10-12 18:42:59,381 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839990780/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 14:43:30] 2025-10-12 18:42:59,382 | INFO     | extracted standard info from prmon json
[2025-10-12 14:43:30] 2025-10-12 18:42:59,382 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 14:43:30] 2025-10-12 18:42:59,382 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 14:43:30] 2025-10-12 18:42:59,382 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 14:43:30] 2025-10-12 18:42:59,382 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 14:43:30] 2025-10-12 18:42:59,384 | INFO     | fitting pss+swap vs Time
[2025-10-12 14:43:30] 2025-10-12 18:42:59,384 | INFO     | sum of square deviations: 28242390.0
[2025-10-12 14:43:30] 2025-10-12 18:42:59,384 | INFO     | sum of deviations: -2518590753.0
[2025-10-12 14:43:30] 2025-10-12 18:42:59,384 | INFO     | mean x: 1760293085.0
[2025-10-12 14:43:30] 2025-10-12 18:42:59,384 | INFO     | mean y: 2566412.711111111
[2025-10-12 14:43:30] 2025-10-12 18:42:59,384 | INFO     | -- intersect: 156981415810.7558
[2025-10-12 14:43:30] 2025-10-12 18:42:59,384 | INFO     | intersect: 156981415810.7558
[2025-10-12 14:43:30] 2025-10-12 18:42:59,384 | INFO     | chi2: 0.044808917651686306
[2025-10-12 14:43:30] 2025-10-12 18:42:59,385 | INFO     | -- intersect: 156981415810.7558
[2025-10-12 14:43:30] 2025-10-12 18:42:59,385 | INFO     | current memory leak: -89.18 B/s (using 45 data points, chi2=0.04)
[2025-10-12 14:43:30] 2025-10-12 18:42:59,385 | INFO     | could have reported an average CPU frequency of 2803 MHz (5 samples)
[2025-10-12 14:43:30] 2025-10-12 18:42:59,385 | INFO     | ..............................
[2025-10-12 14:43:30] 2025-10-12 18:42:59,385 | INFO     | . Timing measurements:
[2025-10-12 14:43:30] 2025-10-12 18:42:59,385 | INFO     | . get job = 0 s
[2025-10-12 14:43:30] 2025-10-12 18:42:59,385 | INFO     | . initial setup = 2 s
[2025-10-12 14:43:30] 2025-10-12 18:42:59,385 | INFO     | . payload setup = 3 s
[2025-10-12 14:43:30] 2025-10-12 18:42:59,385 | INFO     | . stage-in = 0 s
[2025-10-12 14:43:30] 2025-10-12 18:42:59,386 | INFO     | . payload execution = 3133 s
[2025-10-12 14:43:30] 2025-10-12 18:42:59,386 | INFO     | . stage-out = 0 s
[2025-10-12 14:43:30] 2025-10-12 18:42:59,386 | INFO     | . log creation = 0 s
[2025-10-12 14:43:30] 2025-10-12 18:42:59,386 | INFO     | ..............................
[2025-10-12 14:43:30] 2025-10-12 18:42:59,447 | INFO     | 
[2025-10-12 14:43:30] 2025-10-12 18:42:59,448 | INFO     | job summary report
[2025-10-12 14:43:30] 2025-10-12 18:42:59,448 | INFO     | --------------------------------------------------
[2025-10-12 14:43:30] 2025-10-12 18:42:59,448 | INFO     | PanDA job id: 6839990780
[2025-10-12 14:43:30] 2025-10-12 18:42:59,448 | INFO     | task id: 46676269
[2025-10-12 14:43:30] 2025-10-12 18:42:59,448 | INFO     | errors: (none)
[2025-10-12 14:43:30] 2025-10-12 18:42:59,448 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 14:43:30] 2025-10-12 18:42:59,448 | INFO     | pilot state: finished 
[2025-10-12 14:43:30] 2025-10-12 18:42:59,448 | INFO     | transexitcode: 0
[2025-10-12 14:43:30] 2025-10-12 18:42:59,448 | INFO     | exeerrorcode: 0
[2025-10-12 14:43:30] 2025-10-12 18:42:59,448 | INFO     | exeerrordiag: 
[2025-10-12 14:43:30] 2025-10-12 18:42:59,448 | INFO     | exitcode: 0
[2025-10-12 14:43:30] 2025-10-12 18:42:59,449 | INFO     | exitmsg: OK
[2025-10-12 14:43:30] 2025-10-12 18:42:59,449 | INFO     | cpuconsumptiontime: 23286 s
[2025-10-12 14:43:30] 2025-10-12 18:42:59,449 | INFO     | nevents: 400
[2025-10-12 14:43:30] 2025-10-12 18:42:59,449 | INFO     | neventsw: 0
[2025-10-12 14:43:30] 2025-10-12 18:42:59,449 | INFO     | pid: 7483
[2025-10-12 14:43:30] 2025-10-12 18:42:59,449 | INFO     | pgrp: 7483
[2025-10-12 14:43:30] 2025-10-12 18:42:59,449 | INFO     | corecount: 8
[2025-10-12 14:43:30] 2025-10-12 18:42:59,449 | INFO     | event service: False
[2025-10-12 14:43:30] 2025-10-12 18:42:59,449 | INFO     | sizes: {0: 2348857, 3: 2349119, 11: 2349147, 3141: 2374660, 3143: 2383658, 3144: 2383714, 3148: 2384068}
[2025-10-12 14:43:30] 2025-10-12 18:42:59,449 | INFO     | --------------------------------------------------
[2025-10-12 14:43:30] 2025-10-12 18:42:59,449 | INFO     | 
[2025-10-12 14:43:30] 2025-10-12 18:42:59,449 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 14:43:30] 2025-10-12 18:42:59,468 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 14:43:30] 2025-10-12 18:42:59,468 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 14:43:30] 2025-10-12 18:42:59,468 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 14:43:30] 2025-10-12 18:42:59,468 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 14:43:30] 2025-10-12 18:42:59,468 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 14:43:30] 2025-10-12 18:42:59,468 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 14:43:30] 2025-10-12 18:42:59,468 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 14:43:30] 2025-10-12 18:42:59,469 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 14:43:30] 2025-10-12 18:42:59,469 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 14:43:30] 2025-10-12 18:42:59,469 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 14:43:30] 2025-10-12 18:42:59,469 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 14:43:30] 2025-10-12 18:42:59,469 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 14:43:30] 2025-10-12 18:42:59,469 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 14:43:30] 2025-10-12 18:42:59,469 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 14:43:30] 2025-10-12 18:42:59,469 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 14:43:30] 2025-10-12 18:42:59,469 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 14:43:30] 2025-10-12 18:42:59,469 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 14:43:30] 2025-10-12 18:42:59,469 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 14:43:30] 2025-10-12 18:42:59,470 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 14:43:30] 2025-10-12 18:42:59,470 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 14:43:30] 2025-10-12 18:42:59,470 | INFO     | job 6839990780 has completed (purged errors)
[2025-10-12 14:43:30] 2025-10-12 18:42:59,470 | INFO     | overall cleanup function is called
[2025-10-12 14:43:30] 2025-10-12 18:43:00,477 | INFO     | --- collectZombieJob: --- 10, [7483]
[2025-10-12 14:43:30] 2025-10-12 18:43:00,478 | INFO     | zombie collector waiting for pid 7483
[2025-10-12 14:43:30] 2025-10-12 18:43:00,478 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 14:43:30] 2025-10-12 18:43:00,478 | INFO     | collected zombie processes
[2025-10-12 14:43:30] 2025-10-12 18:43:00,478 | INFO     | will attempt to kill all subprocesses of pid=7483
[2025-10-12 14:43:30] 2025-10-12 18:43:00,570 | INFO     | process IDs to be killed: [7483] (in reverse order)
[2025-10-12 14:43:30] 2025-10-12 18:43:00,623 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 14:43:30] 2025-10-12 18:43:00,623 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 14:43:30] 2025-10-12 18:43:00,626 | INFO     | did not find any defunct processes belonging to 7483
[2025-10-12 14:43:30] 2025-10-12 18:43:00,629 | INFO     | did not find any defunct processes belonging to 7483
[2025-10-12 14:43:30] 2025-10-12 18:43:00,629 | INFO     | ready for new job
[2025-10-12 14:43:30] 2025-10-12 18:43:00,629 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 14:43:30] 2025-10-12 18:43:00,631 | INFO     | ***************************************
[2025-10-12 14:43:30] 2025-10-12 18:43:00,631 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 14:43:30] 2025-10-12 18:43:00,631 | INFO     | ***************************************
[2025-10-12 14:43:30] 2025-10-12 18:43:00,631 | INFO     | 
[2025-10-12 14:43:30] 2025-10-12 18:43:00,632 | INFO     | architecture information:
[2025-10-12 14:43:30] 2025-10-12 18:43:00,633 | INFO     | executing command: cat /etc/os-release
[2025-10-12 14:43:30] 2025-10-12 18:43:00,647 | INFO     | cat /etc/os-release:
[2025-10-12 14:43:30] NAME="CentOS Linux"
[2025-10-12 14:43:30] VERSION="7 (Core)"
[2025-10-12 14:43:30] ID="centos"
[2025-10-12 14:43:30] ID_LIKE="rhel fedora"
[2025-10-12 14:43:30] VERSION_ID="7"
[2025-10-12 14:43:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 14:43:30] ANSI_COLOR="0;31"
[2025-10-12 14:43:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 14:43:30] HOME_URL="https://www.centos.org/"
[2025-10-12 14:43:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 14:43:30] 
[2025-10-12 14:43:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 14:43:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 14:43:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 14:43:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 14:43:30] 
[2025-10-12 14:43:30] 2025-10-12 18:43:00,647 | INFO     | ***************************************
[2025-10-12 14:43:30] 2025-10-12 18:43:01,150 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 14:43:30] 2025-10-12 18:43:01,165 | INFO     | sufficient remaining disk space (32400998400 B)
[2025-10-12 14:43:30] 2025-10-12 18:43:01,166 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 14:43:30] 2025-10-12 18:43:01,166 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 14:43:30] 2025-10-12 18:43:01,166 | INFO     | update_server=False
[2025-10-12 14:43:30] 2025-10-12 18:43:01,166 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 14:43:30] 2025-10-12 18:43:01,166 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:43:30] 2025-10-12 18:43:01,298 | INFO     | all payload control threads have been joined
[2025-10-12 14:43:30] 2025-10-12 18:43:01,640 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 14:43:30] 2025-10-12 18:43:01,640 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 14:43:30] 2025-10-12 18:43:01,641 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:43:30] 2025-10-12 18:43:01,641 | INFO     | will abort loop
[2025-10-12 14:43:30] 2025-10-12 18:43:01,851 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 14:43:30] 2025-10-12 18:43:02,074 | INFO     | all job control threads have been joined
[2025-10-12 14:43:30] 2025-10-12 18:43:02,158 | INFO     | all data control threads have been joined
[2025-10-12 14:43:30] 2025-10-12 18:43:02,171 | INFO     | [job] retrieve thread has finished
[2025-10-12 14:43:30] 2025-10-12 18:43:02,172 | INFO     | [job] queue monitor thread has finished
[2025-10-12 14:43:30] 2025-10-12 18:43:02,304 | INFO     | [payload] control thread has finished
[2025-10-12 14:43:30] 2025-10-12 18:43:02,354 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 14:43:30] 2025-10-12 18:43:02,357 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 14:43:30] 2025-10-12 18:43:02,395 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 14:43:30] 2025-10-12 18:43:02,646 | INFO     | [job] job monitor thread has finished
[2025-10-12 14:43:30] 2025-10-12 18:43:02,791 | INFO     | [data] copytool_in thread has finished
[2025-10-12 14:43:30] 2025-10-12 18:43:02,958 | INFO     | [job] validate thread has finished
[2025-10-12 14:43:30] 2025-10-12 18:43:02,962 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 14:43:30] 2025-10-12 18:43:03,047 | INFO     | [payload] validate_post thread has finished
[2025-10-12 14:43:30] 2025-10-12 18:43:03,079 | INFO     | [job] control thread has finished
[2025-10-12 14:43:30] 2025-10-12 18:43:03,092 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 14:43:30] 2025-10-12 18:43:03,147 | INFO     | [payload] failed_post thread has finished
[2025-10-12 14:43:30] 2025-10-12 18:43:03,164 | INFO     | [data] control thread has finished
[2025-10-12 14:43:30] 2025-10-12 18:43:04,360 | INFO     | [data] copytool_out thread has finished
[2025-10-12 14:43:30] 2025-10-12 18:43:05,857 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 14:43:30] 2025-10-12 18:43:23,116 | INFO     | [monitor] cgroup control has ended
[2025-10-12 14:43:30] 2025-10-12 18:43:25,097 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140387563312960)>', '<ExcThread(monitor, started 140386869683968)>']
[2025-10-12 14:43:30] 2025-10-12 18:43:30,117 | INFO     | all workflow threads have been joined
[2025-10-12 14:43:30] 2025-10-12 18:43:30,117 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 14:43:30] 2025-10-12 18:43:30,117 | INFO     | traces error code: 0
[2025-10-12 14:43:30] 2025-10-12 18:43:30,118 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 14:43:30] 2025-10-12 18:43:30,717 | INFO     | PID=917 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-10-12 14:43:30] 2025-10-12 18:43:30,718 | INFO     | .. there are 2 such processes running
[2025-10-12 14:43:30] 2025-10-12 18:43:30,718 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 14:43:30] 2025-10-12 18:43:30,718 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 14:43:30] 2025-10-12 18:43:30,718 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 14:43:30] 2025-10-12 18:43:30,718 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 14:43:30] 2025-10-12 18:43:30,718 | INFO     | [monitor] control thread has ended
[2025-10-12 14:43:30] 2025-10-12 18:43:30,811 [wrapper] ==== pilot stdout END ====
[2025-10-12 14:43:30] 2025-10-12 18:43:30,815 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 14:43:30] 2025-10-12 18:43:30,818 [wrapper] pilotpid: 917
[2025-10-12 14:43:30] 2025-10-12 18:43:30,821 [wrapper] Pilot exit status: 0
[2025-10-12 14:43:30] 2025-10-12 18:43:30,834 [wrapper] pandaids: 6839990780
[2025-10-12 14:43:30] 2025-10-12 18:43:30,864 [wrapper] cleanup supervisor_pilot 27871 918
[2025-10-12 14:43:30] 2025-10-12 18:43:30,867 [wrapper] Test setup, not cleaning
[2025-10-12 14:43:30] 2025-10-12 18:43:30,871 [wrapper] apfmon messages muted
[2025-10-12 14:43:30] 2025-10-12 18:43:30,874 [wrapper] ==== wrapper stdout END ====
[2025-10-12 14:43:30] 2025-10-12 18:43:30,877 [wrapper] ==== wrapper stderr END ====
[2025-10-12 14:43:30]  *** Error codes and diagnostics ***
[2025-10-12 14:43:30]     "exeErrorCode": 0,
[2025-10-12 14:43:30]     "exeErrorDiag": "",
[2025-10-12 14:43:30]     "pilotErrorCode": 0,
[2025-10-12 14:43:30]     "pilotErrorDiag": "",
[2025-10-12 14:43:30]  *** Listing of results directory ***
[2025-10-12 14:43:30] total 417396
[2025-10-12 14:43:30] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 09:05 pilot3.tar.gz
[2025-10-12 14:43:30] -rwx------ 1 boincer umatlas     36292 Oct 12 09:11 runpilot2-wrapper.sh
[2025-10-12 14:43:30] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 09:11 queuedata.json
[2025-10-12 14:43:30] -rw-r--r-- 1 boincer umatlas       100 Oct 12 13:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 14:43:30] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 13:50 run_atlas
[2025-10-12 14:43:30] -rw-r--r-- 1 boincer umatlas       105 Oct 12 13:50 job.xml
[2025-10-12 14:43:30] -rw-r--r-- 2 boincer umatlas 222206756 Oct 12 13:50 EVNT.46676267._003856.pool.root.1
[2025-10-12 14:43:30] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 13:50 start_atlas.sh
[2025-10-12 14:43:30] drwxrwx--x 2 boincer umatlas      4096 Oct 12 13:50 shared
[2025-10-12 14:43:30] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 13:50 input.tar.gz
[2025-10-12 14:43:30] -rw-r--r-- 1 boincer umatlas         0 Oct 12 13:50 boinc_lockfile
[2025-10-12 14:43:30] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 13:50 pandaJob.out
[2025-10-12 14:43:30] -rw------- 1 boincer umatlas    975528 Oct 12 13:50 agis_schedconf.cvmfs.json
[2025-10-12 14:43:30] -rw------- 1 boincer umatlas   1560580 Oct 12 13:50 agis_ddmendpoints.agis.ALL.json
[2025-10-12 14:43:30] drwx------ 5 boincer umatlas      4096 Oct 12 13:50 pilot3
[2025-10-12 14:43:30] -rw-r--r-- 1 boincer umatlas      6136 Oct 12 14:39 init_data.xml
[2025-10-12 14:43:30] -rw------- 1 boincer umatlas 199726839 Oct 12 14:42 HITS.46676269._079216.pool.root.1
[2025-10-12 14:43:30] -rw------- 1 boincer umatlas        95 Oct 12 14:42 pilot_heartbeat.json
[2025-10-12 14:43:30] -rw-r--r-- 1 boincer umatlas       529 Oct 12 14:42 boinc_task_state.xml
[2025-10-12 14:43:30] -rw------- 1 boincer umatlas      1047 Oct 12 14:42 memory_monitor_summary.json
[2025-10-12 14:43:30] -rw------- 1 boincer umatlas    302909 Oct 12 14:42 log.46676269._079216.job.log.tgz.1
[2025-10-12 14:43:30] -rw------- 1 boincer umatlas      7839 Oct 12 14:42 heartbeat.json
[2025-10-12 14:43:30] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 14:43 boinc_mmap_file
[2025-10-12 14:43:30] -rw-r--r-- 1 boincer umatlas        27 Oct 12 14:43 wrapper_checkpoint.txt
[2025-10-12 14:43:30] -rw------- 1 boincer umatlas       818 Oct 12 14:43 pilotlog.txt
[2025-10-12 14:43:30] -rw------- 1 boincer umatlas    487647 Oct 12 14:43 log.46676269._079216.job.log.1
[2025-10-12 14:43:30] -rw------- 1 boincer umatlas       357 Oct 12 14:43 output.list
[2025-10-12 14:43:30] -rw-r--r-- 1 boincer umatlas       620 Oct 12 14:43 runtime_log
[2025-10-12 14:43:30] -rw------- 1 boincer umatlas    808960 Oct 12 14:43 result.tar.gz
[2025-10-12 14:43:30] -rw------- 1 boincer umatlas       657 Oct 12 14:43 tN8KDmK2AS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQyjNDmeoMyom.diag
[2025-10-12 14:43:30] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 14:43 runtime_log.err
[2025-10-12 14:43:30] -rw-r--r-- 1 boincer umatlas     21807 Oct 12 14:43 stderr.txt
[2025-10-12 14:43:31] HITS file was successfully produced:
[2025-10-12 14:43:31] -rw------- 1 boincer umatlas 199726839 Oct 12 14:42 shared/HITS.pool.root.1
[2025-10-12 14:43:31]  *** Contents of shared directory: ***
[2025-10-12 14:43:31] total 413420
[2025-10-12 14:43:31] -rw-r--r-- 2 boincer umatlas 222206756 Oct 12 13:50 ATLAS.root_0
[2025-10-12 14:43:31] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 13:50 start_atlas.sh
[2025-10-12 14:43:31] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 13:50 input.tar.gz
[2025-10-12 14:43:31] -rw------- 1 boincer umatlas 199726839 Oct 12 14:42 HITS.pool.root.1
[2025-10-12 14:43:31] -rw------- 1 boincer umatlas    808960 Oct 12 14:43 result.tar.gz
14:43:32 (29402): run_atlas exited; CPU time 23262.884067
14:43:32 (29402): called boinc_finish(0)

</stderr_txt>
]]>

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