Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 03:53:15 (7312): vboxwrapper version 26210
2025-10-13 03:53:15 (7312): BOINC client version: 8.2.5
2025-10-13 03:53:15 (7312): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-13 03:53:16 (7312): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 03:53:16 (7312): Create VM. (boinc_71d3b53ac96a71c0, slot#20)
2025-10-13 03:53:16 (7312): Setting Memory Size for VM. (4096MB)
2025-10-13 03:53:17 (7312): Setting CPU Count for VM. (1)
2025-10-13 03:53:17 (7312): Setting Chipset Options for VM.
2025-10-13 03:53:17 (7312): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 03:53:17 (7312): Setting Boot Options for VM.
2025-10-13 03:53:18 (7312): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 03:53:18 (7312): Enabling VM Network Access.
2025-10-13 03:53:18 (7312): Disabling USB Support for VM.
2025-10-13 03:53:19 (7312): Disabling COM Port Support for VM.
2025-10-13 03:53:19 (7312): Disabling LPT Port Support for VM.
2025-10-13 03:53:19 (7312): Disabling Audio Support for VM.
2025-10-13 03:53:19 (7312): Disabling Clipboard Support for VM.
2025-10-13 03:53:20 (7312): Disabling Drag and Drop Support for VM.
2025-10-13 03:53:20 (7312): Adding storage controller(s) to VM.
2025-10-13 03:53:20 (7312): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 03:53:21 (7312): Adding VirtualBox Guest Additions to VM.
2025-10-13 03:53:21 (7312): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 03:53:21 (7312): forwarding host port 62435 to guest port 80
2025-10-13 03:53:22 (7312): Enabling remote desktop for VM.
2025-10-13 03:53:22 (7312): Enabling shared directory for VM.
2025-10-13 03:53:23 (7312): Starting VM using VBoxManage interface. (boinc_71d3b53ac96a71c0, slot#20)
2025-10-13 03:53:27 (7312): Successfully started VM. (PID = '20368')
2025-10-13 03:53:27 (7312): Reporting VM Process ID to BOINC.
2025-10-13 03:53:27 (7312): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-13 03:53:27 (7312): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 03:53:27 (7312): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 03:53:27 (7312): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 03:53:27 (7312): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 03:53:27 (7312): Detected: Web Application Enabled (http://localhost:62435)
2025-10-13 03:53:27 (7312): Detected: Remote Desktop Enabled (localhost:62436)
2025-10-13 03:53:27 (7312): Preference change detected
2025-10-13 03:53:27 (7312): Setting CPU throttle for VM. (100%)
2025-10-13 03:53:27 (7312): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 03:53:29 (7312): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 03:53:29 (7312): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 03:53:31 (7312): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 03:53:31 (7312): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 03:53:31 (7312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 03:53:34 (7312): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 03:53:34 (7312): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-13 03:53:38 (7312): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 03:53:38 (7312): Guest Log: 00:00:00.000057 main     Log opened 2025-10-13T03:53:36.892048000Z
2025-10-13 03:53:38 (7312): Guest Log: 00:00:00.000144 main     OS Product: Linux
2025-10-13 03:53:38 (7312): Guest Log: 00:00:00.000156 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 03:53:38 (7312): Guest Log: 00:00:00.000165 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 03:53:38 (7312): Guest Log: 00:00:00.000174 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 03:53:38 (7312): Guest Log: 00:00:00.000175 main     Process ID: 1241
2025-10-13 03:53:38 (7312): Guest Log: 00:00:00.000175 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 03:53:38 (7312): Guest Log: 00:00:00.000674 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 03:53:38 (7312): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 03:53:38 (7312): Guest Log: [INFO] Mounting shared directory
2025-10-13 03:53:38 (7312): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 03:53:48 (7312): Guest Log: 00:00:10.008678 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 685 178 000ns (GuestNow=1 760 320 428 215 219 000 ns GuestLast=1 760 327 616 900 397 000 ns fSetTimeLastLoop=true )
2025-10-13 03:54:08 (7312): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 03:54:08 (7312): Guest Log: [INFO] Detected branch: prod
2025-10-13 03:54:08 (7312): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 03:54:08 (7312): Guest Log: Copying input files
2025-10-13 03:54:09 (7312): Guest Log: Copied input files into RunAtlas.
2025-10-13 03:54:09 (7312): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-10-13 03:54:16 (7312): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 03:54:17 (7312): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 03:54:17 (7312): Guest Log: 2.6.3.0 1535 0 29508 151643 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-10-13 03:54:17 (7312): Guest Log: copied the webapp to /var/www
2025-10-13 03:54:17 (7312): Guest Log: core_number=1
2025-10-13 03:54:17 (7312): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 03:54:17 (7312): Guest Log:  *** Starting ATLAS job. (PandaID=6829591057 taskID=46376905) ***
2025-10-13 05:33:30 (7312): Status Report: Elapsed Time: '6000.000000'
2025-10-13 05:33:30 (7312): Status Report: CPU Time: '5902.609375'
2025-10-13 07:13:33 (7312): Status Report: Elapsed Time: '12000.000000'
2025-10-13 07:13:33 (7312): Status Report: CPU Time: '11880.484375'
2025-10-13 08:53:36 (7312): Status Report: Elapsed Time: '18000.000000'
2025-10-13 08:53:36 (7312): Status Report: CPU Time: '17860.640625'
2025-10-13 09:16:31 (7312): Guest Log:  *** Job finished ***
2025-10-13 09:16:31 (7312): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:09,683 | INFO     | all workflow threads have been joined
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:09,683 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:09,683 | INFO     | traces error code: 0
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:09,683 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:22,262 | INFO     | PID=5856 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:22,262 | INFO     | found 0 job(s) in 20 queues
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:22,262 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:22,263 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:22,263 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:22,263 | INFO     | [monitor] control thread has ended
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:22,374 [wrapper] ==== pilot stdout END ====
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:22,375 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:22,377 [wrapper] pilotpid: 5856
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:22,378 [wrapper] Pilot exit status: 0
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:22,419 [wrapper] pandaids: 6829591057
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:22,432 [wrapper] cleanup supervisor_pilot 23207 5857
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:22,433 [wrapper] Test setup, not cleaning
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:22,435 [wrapper] apfmon messages muted
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:22,436 [wrapper] ==== wrapper stdout END ====
2025-10-13 09:16:31 (7312): Guest Log: 2025-10-13 07:16:22,438 [wrapper] ==== wrapper stderr END ====
2025-10-13 09:16:31 (7312): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 09:16:31 (7312): Guest Log:     "exeErrorCode": 0,
2025-10-13 09:16:31 (7312): Guest Log:     "exeErrorDiag": "",
2025-10-13 09:16:31 (7312): Guest Log:     "pilotErrorCode": 0,
2025-10-13 09:16:31 (7312): Guest Log:     "pilotErrorDiag": "",
2025-10-13 09:16:31 (7312): Guest Log:  *** Listing of results directory ***
2025-10-13 09:16:31 (7312): Guest Log: total 179544
2025-10-13 09:16:31 (7312): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  4 11:54 queuedata.json
2025-10-13 09:16:31 (7312): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  4 11:56 runpilot2-wrapper.sh
2025-10-13 09:16:31 (7312): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  4 11:56 pilot3.tar.gz
2025-10-13 09:16:31 (7312): Guest Log: -rwxr-xr-x. 1 atlas atlas      9354 Oct 13 01:54 init_data.xml
2025-10-13 09:16:31 (7312): Guest Log: -rwxr-xr-x. 1 atlas atlas    565598 Oct 13 01:54 input.tar.gz
2025-10-13 09:16:31 (7312): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 13 01:54 start_atlas.sh
2025-10-13 09:16:31 (7312): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 13 01:54 EVNT.46376901._002112.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 09:16:31 (7312): Guest Log: -rw-r--r--. 1 atlas atlas      2519 Oct 13 01:54 pandaJob.out
2025-10-13 09:16:31 (7312): Guest Log: -rw-------. 1 atlas atlas    975595 Oct 13 01:54 agis_schedconf.cvmfs.json
2025-10-13 09:16:31 (7312): Guest Log: drwx------. 4 atlas atlas      4096 Oct 13 01:54 pilot3
2025-10-13 09:16:31 (7312): Guest Log: -rw-------. 1 atlas atlas 173841891 Oct 13 07:15 HITS.46376905._058808.pool.root.1
2025-10-13 09:16:31 (7312): Guest Log: -rw-------. 1 atlas atlas      1025 Oct 13 07:15 memory_monitor_summary.json
2025-10-13 09:16:31 (7312): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 13 07:15 agis_ddmendpoints.agis.ALL.json
2025-10-13 09:16:31 (7312): Guest Log: -rw-------. 1 atlas atlas    426031 Oct 13 07:15 log.46376905._058808.job.log.tgz.1
2025-10-13 09:16:31 (7312): Guest Log: -rw-------. 1 atlas atlas        95 Oct 13 07:15 pilot_heartbeat.json
2025-10-13 09:16:31 (7312): Guest Log: -rw-------. 1 atlas atlas      7804 Oct 13 07:15 heartbeat.json
2025-10-13 09:16:31 (7312): Guest Log: -rw-------. 1 atlas atlas       744 Oct 13 07:16 pilotlog.txt
2025-10-13 09:16:31 (7312): Guest Log: -rw-------. 1 atlas atlas   2670742 Oct 13 07:16 log.46376905._058808.job.log.1
2025-10-13 09:16:31 (7312): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 07:16 output.list
2025-10-13 09:16:31 (7312): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 07:16 runtime_log
2025-10-13 09:16:31 (7312): Guest Log: -rw-------. 1 atlas atlas   3112960 Oct 13 07:16 result.tar.gz
2025-10-13 09:16:31 (7312): Guest Log: -rw-------. 1 atlas atlas       656 Oct 13 07:16 YPbKDmq3FP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQELNDmCZrann.diag
2025-10-13 09:16:31 (7312): Guest Log: -rw-r--r--. 1 atlas atlas      8519 Oct 13 07:16 runtime_log.err
2025-10-13 09:16:31 (7312): Guest Log: Looking for outputfile HITS.46376905._058808.pool.root.1
2025-10-13 09:16:31 (7312): Guest Log: HITS file was successfully produced
2025-10-13 09:16:31 (7312): Guest Log: -rw-------. 1 atlas atlas 173841891 Oct 13 07:15 /home/atlas/RunAtlas/HITS.46376905._058808.pool.root.1
2025-10-13 09:16:31 (7312): Guest Log: Successfully finished the ATLAS job!
2025-10-13 09:16:31 (7312): Guest Log: Copying the results back to the shared directory!
2025-10-13 09:16:31 (7312): Guest Log:  *** Contents of shared directory: ***
2025-10-13 09:16:31 (7312): Guest Log: total 381988
2025-10-13 09:16:31 (7312): Guest Log: -rwxrwxrwx. 1 root root 213600669 Oct 13 01:53 ATLAS.root_0
2025-10-13 09:16:31 (7312): Guest Log: -rwxrwxrwx. 1 root root 173841891 Oct 13  2025 HITS.pool.root.1
2025-10-13 09:16:31 (7312): Guest Log: -rwxrwxrwx. 1 root root      9354 Oct 13 01:53 init_data.xml
2025-10-13 09:16:31 (7312): Guest Log: -rwxrwxrwx. 1 root root    565598 Oct 12 17:54 input.tar.gz
2025-10-13 09:16:31 (7312): Guest Log: -rwxrwxrwx. 1 root root   3112960 Oct 13  2025 result.tar.gz
2025-10-13 09:16:31 (7312): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 12 17:54 start_atlas.sh
2025-10-13 09:16:31 (7312): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 09:16:31 (7312): VM Completion File Detected.
2025-10-13 09:16:31 (7312): Powering off VM.
2025-10-13 09:16:32 (7312): Successfully stopped VM.
2025-10-13 09:16:32 (7312): Deregistering VM. (boinc_71d3b53ac96a71c0, slot#20)
2025-10-13 09:16:32 (7312): Removing network bandwidth throttle group from VM.
2025-10-13 09:16:32 (7312): Removing VM from VirtualBox.
2025-10-13 09:16:37 (7312): called boinc_finish(0)

</stderr_txt>
]]>

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