Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:20:30 (1408025): wrapper (7.7.26015): starting
14:20:30 (1408025): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 14:20:30] Arguments: --nthreads 9
[2025-10-12 14:20:30] Threads: 9
[2025-10-12 14:20:30] Checking for CVMFS
[2025-10-12 14:20:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:20:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:20:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:20:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:20:30] 2.13.2.0 3269412 36079 374592 151631 0 476 35931101 40960001 60691 16776704 0 464858697 99.848 184904900 36778 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 14:20:30] CVMFS is ok
[2025-10-12 14:20:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 14:20:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 14:20:30] Further information can be found at the LHC@home message board.
[2025-10-12 14:20:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:20:30] Checking for apptainer binary...
[2025-10-12 14:20:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:20:30] Running /usr/bin/apptainer --version
[2025-10-12 14:20:30] apptainer version 1.4.3-1.el9
[2025-10-12 14:20:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:20:30] c8-16-2.aglt2.org
[2025-10-12 14:20:30] apptainer works
[2025-10-12 14:20:30] Set ATHENA_PROC_NUMBER=9
[2025-10-12 14:20:30] Set ATHENA_CORE_NUMBER=9
[2025-10-12 14:20:30] Starting ATLAS job with PandaID=6839988297
[2025-10-12 14:20:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 15:21:58]  *** The last 200 lines of the pilot log: ***
[2025-10-12 15:21:58] 2025-10-12 19:20:33,752 | INFO     | monitor loop #228: job 0:6839988297 is in state 'finished'
[2025-10-12 15:21:58] 2025-10-12 19:20:33,752 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:21:58] 2025-10-12 19:20:34,455 | INFO     | time since job start (3588s) is within the limit (172800.0s)
[2025-10-12 15:21:58] 2025-10-12 19:20:35,250 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 15:21:58] 2025-10-12 19:20:35,510 | INFO     | job 6839988297 has state=finished
[2025-10-12 15:21:58] 2025-10-12 19:20:35,510 | INFO     | preparing for final server update for job 6839988297 in state='finished'
[2025-10-12 15:21:58] 2025-10-12 19:20:35,510 | INFO     | this job has now completed (state=finished)
[2025-10-12 15:21:58] 2025-10-12 19:20:35,511 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 15:21:58] 2025-10-12 19:20:35,511 | INFO     | log transfer has been attempted: DONE
[2025-10-12 15:21:58] 2025-10-12 19:20:35,511 | INFO     | job 6839988297 has finished - writing final server update
[2025-10-12 15:21:58] 2025-10-12 19:20:35,518 | INFO     | total number of processed events: 400 (read)
[2025-10-12 15:21:58] 2025-10-12 19:20:35,550 | INFO     | executing command: lscpu
[2025-10-12 15:21:58] 2025-10-12 19:20:35,708 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 15:21:58] 2025-10-12 19:20:36,258 | INFO     | monitor loop #229: job 0:6839988297 is in state 'finished'
[2025-10-12 15:21:58] 2025-10-12 19:20:36,258 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:21:58] 2025-10-12 19:20:36,983 | INFO     | PID=1412758 has CPU usage=13.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 15:21:58] 2025-10-12 19:20:36,983 | INFO     | .. there are 65 such processes running
[2025-10-12 15:21:58] 2025-10-12 19:20:37,985 | INFO     | time since job start (3591s) is within the limit (172800.0s)
[2025-10-12 15:21:58] 2025-10-12 19:20:38,762 | INFO     | monitor loop #230: job 0:6839988297 is in state 'finished'
[2025-10-12 15:21:58] 2025-10-12 19:20:38,762 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:21:58] 2025-10-12 19:20:39,992 | INFO     | time since job start (3593s) is within the limit (172800.0s)
[2025-10-12 15:21:58] 2025-10-12 19:20:41,267 | INFO     | monitor loop #231: job 0:6839988297 is in state 'finished'
[2025-10-12 15:21:58] 2025-10-12 19:20:41,267 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:21:58] 2025-10-12 19:20:41,999 | INFO     | time since job start (3595s) is within the limit (172800.0s)
[2025-10-12 15:21:58] 2025-10-12 19:20:43,791 | INFO     | monitor loop #232: job 0:6839988297 is in state 'finished'
[2025-10-12 15:21:58] 2025-10-12 19:20:43,791 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:21:58] 2025-10-12 19:20:43,973 [wrapper] supervise_pilot (15 min periods counter: 5)
[2025-10-12 15:21:58] 2025-10-12 19:20:44,006 | INFO     | time since job start (3598s) is within the limit (172800.0s)
[2025-10-12 15:21:58] 2025-10-12 19:20:46,013 | INFO     | time since job start (3600s) is within the limit (172800.0s)
[2025-10-12 15:21:58] 2025-10-12 19:20:46,295 | INFO     | monitor loop #233: job 0:6839988297 is in state 'finished'
[2025-10-12 15:21:58] 2025-10-12 19:20:46,295 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:21:58] 2025-10-12 19:20:48,022 | INFO     | time since job start (3602s) is within the limit (172800.0s)
[2025-10-12 15:21:58] 2025-10-12 19:20:48,800 | INFO     | monitor loop #234: job 0:6839988297 is in state 'finished'
[2025-10-12 15:21:58] 2025-10-12 19:20:48,800 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:21:58] 2025-10-12 19:20:49,192 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 15:21:58] 2025-10-12 19:20:49,199 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3795.693007812494
[2025-10-12 15:21:58] 2025-10-12 19:20:49,211 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6839988297/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 15:21:58] 2025-10-12 19:20:49,211 | INFO     | extracted standard info from prmon json
[2025-10-12 15:21:58] 2025-10-12 19:20:49,211 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 15:21:58] 2025-10-12 19:20:49,211 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 15:21:58] 2025-10-12 19:20:49,212 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 15:21:58] 2025-10-12 19:20:49,212 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 15:21:58] 2025-10-12 19:20:49,213 | INFO     | fitting pss+swap vs Time
[2025-10-12 15:21:58] 2025-10-12 19:20:49,213 | INFO     | sum of square deviations: 43584073.0
[2025-10-12 15:21:58] 2025-10-12 19:20:49,213 | INFO     | sum of deviations: -475520650.5
[2025-10-12 15:21:58] 2025-10-12 19:20:49,213 | INFO     | mean x: 1760295139.5
[2025-10-12 15:21:58] 2025-10-12 19:20:49,213 | INFO     | mean y: 2220629.403846154
[2025-10-12 15:21:58] 2025-10-12 19:20:49,213 | INFO     | -- intersect: 19207784317.93356
[2025-10-12 15:21:58] 2025-10-12 19:20:49,213 | INFO     | intersect: 19207784317.93356
[2025-10-12 15:21:58] 2025-10-12 19:20:49,213 | INFO     | chi2: 0.00867840180887547
[2025-10-12 15:21:58] 2025-10-12 19:20:49,213 | INFO     | -- intersect: 19207784317.93356
[2025-10-12 15:21:58] 2025-10-12 19:20:49,213 | INFO     | current memory leak: -10.91 B/s (using 52 data points, chi2=0.01)
[2025-10-12 15:21:58] 2025-10-12 19:20:49,213 | INFO     | could have reported an average CPU frequency of 3795 MHz (5 samples)
[2025-10-12 15:21:58] 2025-10-12 19:20:49,214 | INFO     | ..............................
[2025-10-12 15:21:58] 2025-10-12 19:20:49,214 | INFO     | . Timing measurements:
[2025-10-12 15:21:58] 2025-10-12 19:20:49,214 | INFO     | . get job = 0 s
[2025-10-12 15:21:58] 2025-10-12 19:20:49,214 | INFO     | . initial setup = 2 s
[2025-10-12 15:21:58] 2025-10-12 19:20:49,214 | INFO     | . payload setup = 9 s
[2025-10-12 15:21:58] 2025-10-12 19:20:49,214 | INFO     | . stage-in = 0 s
[2025-10-12 15:21:58] 2025-10-12 19:20:49,214 | INFO     | . payload execution = 3553 s
[2025-10-12 15:21:58] 2025-10-12 19:20:49,214 | INFO     | . stage-out = 1 s
[2025-10-12 15:21:58] 2025-10-12 19:20:49,214 | INFO     | . log creation = 0 s
[2025-10-12 15:21:58] 2025-10-12 19:20:49,214 | INFO     | ..............................
[2025-10-12 15:21:58] 2025-10-12 19:20:49,354 | INFO     | 
[2025-10-12 15:21:58] 2025-10-12 19:20:49,354 | INFO     | job summary report
[2025-10-12 15:21:58] 2025-10-12 19:20:49,354 | INFO     | --------------------------------------------------
[2025-10-12 15:21:58] 2025-10-12 19:20:49,354 | INFO     | PanDA job id: 6839988297
[2025-10-12 15:21:58] 2025-10-12 19:20:49,354 | INFO     | task id: 46676269
[2025-10-12 15:21:58] 2025-10-12 19:20:49,354 | INFO     | errors: (none)
[2025-10-12 15:21:58] 2025-10-12 19:20:49,354 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 15:21:58] 2025-10-12 19:20:49,354 | INFO     | pilot state: finished 
[2025-10-12 15:21:58] 2025-10-12 19:20:49,354 | INFO     | transexitcode: 0
[2025-10-12 15:21:58] 2025-10-12 19:20:49,354 | INFO     | exeerrorcode: 0
[2025-10-12 15:21:58] 2025-10-12 19:20:49,354 | INFO     | exeerrordiag: 
[2025-10-12 15:21:58] 2025-10-12 19:20:49,354 | INFO     | exitcode: 0
[2025-10-12 15:21:58] 2025-10-12 19:20:49,354 | INFO     | exitmsg: OK
[2025-10-12 15:21:58] 2025-10-12 19:20:49,355 | INFO     | cpuconsumptiontime: 22101 s
[2025-10-12 15:21:58] 2025-10-12 19:20:49,355 | INFO     | nevents: 400
[2025-10-12 15:21:58] 2025-10-12 19:20:49,355 | INFO     | neventsw: 0
[2025-10-12 15:21:58] 2025-10-12 19:20:49,359 | INFO     | pid: 1421127
[2025-10-12 15:21:58] 2025-10-12 19:20:49,359 | INFO     | pgrp: 1421127
[2025-10-12 15:21:58] 2025-10-12 19:20:49,359 | INFO     | corecount: 9
[2025-10-12 15:21:58] 2025-10-12 19:20:49,359 | INFO     | event service: False
[2025-10-12 15:21:58] 2025-10-12 19:20:49,359 | INFO     | sizes: {0: 2348857, 7: 2349119, 11: 2349147, 3567: 2374849, 3569: 2383847, 3571: 2383903, 3585: 2384257}
[2025-10-12 15:21:58] 2025-10-12 19:20:49,359 | INFO     | --------------------------------------------------
[2025-10-12 15:21:58] 2025-10-12 19:20:49,359 | INFO     | 
[2025-10-12 15:21:58] 2025-10-12 19:20:49,359 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-10-12 15:21:58] 2025-10-12 19:20:49,487 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 15:21:58] 2025-10-12 19:20:49,487 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 15:21:58] 2025-10-12 19:20:49,487 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 15:21:58] 2025-10-12 19:20:49,487 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 15:21:58] 2025-10-12 19:20:49,487 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 15:21:58] 2025-10-12 19:20:49,487 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 15:21:58] 2025-10-12 19:20:49,487 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 15:21:58] 2025-10-12 19:20:49,487 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 15:21:58] 2025-10-12 19:20:49,487 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 15:21:58] 2025-10-12 19:20:49,487 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 15:21:58] 2025-10-12 19:20:49,487 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 15:21:58] 2025-10-12 19:20:49,487 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 15:21:58] 2025-10-12 19:20:49,487 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 15:21:58] 2025-10-12 19:20:49,487 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 15:21:58] 2025-10-12 19:20:49,487 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 15:21:58] 2025-10-12 19:20:49,488 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 15:21:58] 2025-10-12 19:20:49,488 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 15:21:58] 2025-10-12 19:20:49,488 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 15:21:58] 2025-10-12 19:20:49,488 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 15:21:58] 2025-10-12 19:20:49,488 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 15:21:58] 2025-10-12 19:20:49,488 | INFO     | job 6839988297 has completed (purged errors)
[2025-10-12 15:21:58] 2025-10-12 19:20:49,488 | INFO     | overall cleanup function is called
[2025-10-12 15:21:58] 2025-10-12 19:20:50,497 | INFO     | --- collectZombieJob: --- 10, [1421127]
[2025-10-12 15:21:58] 2025-10-12 19:20:50,497 | INFO     | zombie collector waiting for pid 1421127
[2025-10-12 15:21:58] 2025-10-12 19:20:50,497 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 15:21:58] 2025-10-12 19:20:50,497 | INFO     | collected zombie processes
[2025-10-12 15:21:58] 2025-10-12 19:20:50,497 | INFO     | will attempt to kill all subprocesses of pid=1421127
[2025-10-12 15:21:58] 2025-10-12 19:20:52,269 | INFO     | process IDs to be killed: [1421127] (in reverse order)
[2025-10-12 15:21:58] 2025-10-12 19:20:52,713 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 15:21:58] 2025-10-12 19:20:52,713 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 15:21:58] 2025-10-12 19:20:52,782 | INFO     | did not find any defunct processes belonging to 1421127
[2025-10-12 15:21:58] 2025-10-12 19:20:52,853 | INFO     | did not find any defunct processes belonging to 1421127
[2025-10-12 15:21:58] 2025-10-12 19:20:52,853 | INFO     | ready for new job
[2025-10-12 15:21:58] 2025-10-12 19:20:52,853 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 15:21:58] 2025-10-12 19:20:52,918 | INFO     | ***************************************
[2025-10-12 15:21:58] 2025-10-12 19:20:52,918 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 15:21:58] 2025-10-12 19:20:52,918 | INFO     | ***************************************
[2025-10-12 15:21:58] 2025-10-12 19:20:52,918 | INFO     | 
[2025-10-12 15:21:58] 2025-10-12 19:20:52,961 | INFO     | architecture information:
[2025-10-12 15:21:58] 2025-10-12 19:20:52,961 | INFO     | executing command: cat /etc/os-release
[2025-10-12 15:21:58] 2025-10-12 19:20:52,978 | INFO     | cat /etc/os-release:
[2025-10-12 15:21:58] NAME="CentOS Linux"
[2025-10-12 15:21:58] VERSION="7 (Core)"
[2025-10-12 15:21:58] ID="centos"
[2025-10-12 15:21:58] ID_LIKE="rhel fedora"
[2025-10-12 15:21:58] VERSION_ID="7"
[2025-10-12 15:21:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 15:21:58] ANSI_COLOR="0;31"
[2025-10-12 15:21:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 15:21:58] HOME_URL="https://www.centos.org/"
[2025-10-12 15:21:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 15:21:58] 
[2025-10-12 15:21:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 15:21:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 15:21:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 15:21:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 15:21:58] 
[2025-10-12 15:21:58] 2025-10-12 19:20:52,978 | INFO     | ***************************************
[2025-10-12 15:21:58] 2025-10-12 19:20:53,513 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-12 15:21:58] 2025-10-12 19:20:53,536 | INFO     | sufficient remaining disk space (166988873728 B)
[2025-10-12 15:21:58] 2025-10-12 19:20:53,537 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 15:21:58] 2025-10-12 19:20:53,537 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 15:21:58] 2025-10-12 19:20:53,537 | INFO     | update_server=False
[2025-10-12 15:21:58] 2025-10-12 19:20:53,537 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 15:21:58] 2025-10-12 19:20:53,671 | INFO     | all data control threads have been joined
[2025-10-12 15:21:58] 2025-10-12 19:20:53,819 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 15:21:58] 2025-10-12 19:20:53,819 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 15:21:58] 2025-10-12 19:20:53,819 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:21:58] 2025-10-12 19:20:53,819 | INFO     | will abort loop
[2025-10-12 15:21:58] 2025-10-12 19:20:53,873 | INFO     | all payload control threads have been joined
[2025-10-12 15:21:58] 2025-10-12 19:20:54,022 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 15:21:58] 2025-10-12 19:20:54,368 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:21:58] 2025-10-12 19:20:54,543 | INFO     | [job] retrieve thread has finished
[2025-10-12 15:21:58] 2025-10-12 19:20:54,677 | INFO     | [data] control thread has finished
[2025-10-12 15:21:58] 2025-10-12 19:20:54,786 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 15:21:58] 2025-10-12 19:20:54,805 | INFO     | all job control threads have been joined
[2025-10-12 15:21:58] 2025-10-12 19:20:54,807 | INFO     | [payload] failed_post thread has finished
[2025-10-12 15:21:58] 2025-10-12 19:20:54,827 | INFO     | [job] job monitor thread has finished
[2025-10-12 15:21:58] 2025-10-12 19:20:54,879 | INFO     | [payload] control thread has finished
[2025-10-12 15:21:58] 2025-10-12 19:20:55,029 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 15:21:58] 2025-10-12 19:20:55,185 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 15:21:58] 2025-10-12 19:20:55,186 | INFO     | [job] validate thread has finished
[2025-10-12 15:21:58] 2025-10-12 19:20:55,377 | INFO     | [job] queue monitor thread has finished
[2025-10-12 15:21:58] 2025-10-12 19:20:55,592 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 15:21:58] 2025-10-12 19:20:55,621 | INFO     | [data] copytool_in thread has finished
[2025-10-12 15:21:58] 2025-10-12 19:20:55,638 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 15:21:58] 2025-10-12 19:20:55,678 | INFO     | [payload] validate_post thread has finished
[2025-10-12 15:21:58] 2025-10-12 19:20:55,810 | INFO     | [job] control thread has finished
[2025-10-12 15:21:58] 2025-10-12 19:20:56,029 | INFO     | [data] copytool_out thread has finished
[2025-10-12 15:21:58] 2025-10-12 19:20:59,038 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 15:21:58] 2025-10-12 19:21:22,394 | INFO     | PID=1412758 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 15:21:58] 2025-10-12 19:21:22,394 | INFO     | .. there are 65 such processes running
[2025-10-12 15:21:58] 2025-10-12 19:21:22,394 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 15:21:58] 2025-10-12 19:21:22,394 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 15:21:58] 2025-10-12 19:21:22,394 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 15:21:58] 2025-10-12 19:21:52,104 | INFO     | [monitor] cgroup control has ended
[2025-10-12 15:21:58] 2025-10-12 19:21:52,476 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139801438242624)>', '<ExcThread(monitor, started 139800506001152)>']
[2025-10-12 15:21:58] 2025-10-12 19:21:52,594 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 15:21:58] 2025-10-12 19:21:52,594 | INFO     | [monitor] control thread has ended
[2025-10-12 15:21:58] 2025-10-12 19:21:57,502 | INFO     | all workflow threads have been joined
[2025-10-12 15:21:58] 2025-10-12 19:21:57,502 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 15:21:58] 2025-10-12 19:21:57,502 | INFO     | traces error code: 0
[2025-10-12 15:21:58] 2025-10-12 19:21:57,502 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 15:21:58] 2025-10-12 19:21:57,643 [wrapper] ==== pilot stdout END ====
[2025-10-12 15:21:58] 2025-10-12 19:21:57,652 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 15:21:58] 2025-10-12 19:21:57,681 [wrapper] pilotpid: 1412758
[2025-10-12 15:21:58] 2025-10-12 19:21:57,697 [wrapper] Pilot exit status: 0
[2025-10-12 15:21:58] 2025-10-12 19:21:57,835 [wrapper] pandaids: 6839988297
[2025-10-12 15:21:58] 2025-10-12 19:21:58,190 [wrapper] cleanup supervisor_pilot 2193571 1412759
[2025-10-12 15:21:58] 2025-10-12 19:21:58,200 [wrapper] Test setup, not cleaning
[2025-10-12 15:21:58] 2025-10-12 19:21:58,214 [wrapper] apfmon messages muted
[2025-10-12 15:21:58] 2025-10-12 19:21:58,248 [wrapper] ==== wrapper stdout END ====
[2025-10-12 15:21:58] 2025-10-12 19:21:58,287 [wrapper] ==== wrapper stderr END ====
[2025-10-12 15:21:58]  *** Error codes and diagnostics ***
[2025-10-12 15:21:58]     "exeErrorCode": 0,
[2025-10-12 15:21:58]     "exeErrorDiag": "",
[2025-10-12 15:21:58]     "pilotErrorCode": 0,
[2025-10-12 15:21:58]     "pilotErrorDiag": "",
[2025-10-12 15:21:58]  *** Listing of results directory ***
[2025-10-12 15:21:58] total 412136
[2025-10-12 15:21:58] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 08:35 pilot3.tar.gz
[2025-10-12 15:21:58] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 08:43 queuedata.json
[2025-10-12 15:21:58] -rwx------. 1 boincer umatlas     36292 Oct 12 08:43 runpilot2-wrapper.sh
[2025-10-12 15:21:58] -rw-r--r--. 1 boincer umatlas       100 Oct 12 14:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 15:21:58] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 14:20 run_atlas
[2025-10-12 15:21:58] -rw-r--r--. 1 boincer umatlas       105 Oct 12 14:20 job.xml
[2025-10-12 15:21:58] -rw-r--r--. 2 boincer umatlas 221161628 Oct 12 14:20 EVNT.46676267._003799.pool.root.1
[2025-10-12 15:21:58] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 14:20 start_atlas.sh
[2025-10-12 15:21:58] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 14:20 shared
[2025-10-12 15:21:58] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 14:20 input.tar.gz
[2025-10-12 15:21:58] -rw-r--r--. 1 boincer umatlas         0 Oct 12 14:20 boinc_lockfile
[2025-10-12 15:21:58] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 14:20 pandaJob.out
[2025-10-12 15:21:58] -rw-------. 1 boincer umatlas    975528 Oct 12 14:20 agis_schedconf.cvmfs.json
[2025-10-12 15:21:58] -rw-------. 1 boincer umatlas   1560580 Oct 12 14:20 agis_ddmendpoints.agis.ALL.json
[2025-10-12 15:21:58] drwx------. 5 boincer umatlas      4096 Oct 12 14:20 pilot3
[2025-10-12 15:21:58] -rw-r--r--. 1 boincer umatlas      7161 Oct 12 15:19 init_data.xml
[2025-10-12 15:21:58] -rw-------. 1 boincer umatlas 195322215 Oct 12 15:20 HITS.46676269._078390.pool.root.1
[2025-10-12 15:21:58] -rw-r--r--. 1 boincer umatlas       529 Oct 12 15:20 boinc_task_state.xml
[2025-10-12 15:21:58] -rw-------. 1 boincer umatlas      1036 Oct 12 15:20 memory_monitor_summary.json
[2025-10-12 15:21:58] -rw-------. 1 boincer umatlas    319321 Oct 12 15:20 log.46676269._078390.job.log.tgz.1
[2025-10-12 15:21:58] -rw-------. 1 boincer umatlas        95 Oct 12 15:20 pilot_heartbeat.json
[2025-10-12 15:21:58] -rw-------. 1 boincer umatlas      7776 Oct 12 15:20 heartbeat.json
[2025-10-12 15:21:58] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 15:21 boinc_mmap_file
[2025-10-12 15:21:58] -rw-------. 1 boincer umatlas      5011 Oct 12 15:21 pilotlog.txt
[2025-10-12 15:21:58] -rw-r--r--. 1 boincer umatlas        27 Oct 12 15:21 wrapper_checkpoint.txt
[2025-10-12 15:21:58] -rw-------. 1 boincer umatlas    500993 Oct 12 15:21 log.46676269._078390.job.log.1
[2025-10-12 15:21:58] -rw-------. 1 boincer umatlas       357 Oct 12 15:21 output.list
[2025-10-12 15:21:58] -rw-r--r--. 1 boincer umatlas       620 Oct 12 15:21 runtime_log
[2025-10-12 15:21:58] -rw-------. 1 boincer umatlas    839680 Oct 12 15:21 result.tar.gz
[2025-10-12 15:21:58] -rw-------. 1 boincer umatlas       650 Oct 12 15:21 YAnNDmEbAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkpjNDmez11xn.diag
[2025-10-12 15:21:58] -rw-r--r--. 1 boincer umatlas      8698 Oct 12 15:21 runtime_log.err
[2025-10-12 15:21:58] -rw-r--r--. 1 boincer umatlas     22229 Oct 12 15:21 stderr.txt
[2025-10-12 15:21:58] HITS file was successfully produced:
[2025-10-12 15:21:58] -rw-------. 1 boincer umatlas 195322215 Oct 12 15:20 shared/HITS.pool.root.1
[2025-10-12 15:21:58]  *** Contents of shared directory: ***
[2025-10-12 15:21:58] total 408128
[2025-10-12 15:21:58] -rw-r--r--. 2 boincer umatlas 221161628 Oct 12 14:20 ATLAS.root_0
[2025-10-12 15:21:58] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 14:20 start_atlas.sh
[2025-10-12 15:21:58] -rw-r--r--. 2 boincer umatlas    569679 Oct 12 14:20 input.tar.gz
[2025-10-12 15:21:58] -rw-------. 1 boincer umatlas 195322215 Oct 12 15:20 HITS.pool.root.1
[2025-10-12 15:21:58] -rw-------. 1 boincer umatlas    839680 Oct 12 15:21 result.tar.gz
15:22:00 (1408025): run_atlas exited; CPU time 22242.791524
15:22:00 (1408025): called boinc_finish(0)

</stderr_txt>
]]>

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