Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:45:11 (25201): wrapper (7.7.26015): starting
13:45:11 (25201): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 13:45:11] Arguments: --nthreads 12
[2025-10-12 13:45:11] Threads: 12
[2025-10-12 13:45:11] Checking for CVMFS
[2025-10-12 13:45:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 13:45:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 13:45:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 13:45:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 13:45:11] 2.11.2.0 723 53146 85188 151629 2 57 13515413 20275200 1 130560 0 29947411 99.957 2394423 32839 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 13:45:11] CVMFS is ok
[2025-10-12 13:45:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 13:45:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 13:45:11] Further information can be found at the LHC@home message board.
[2025-10-12 13:45:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 13:45:11] Checking for apptainer binary...
[2025-10-12 13:45:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 13:45:11] Running /usr/bin/apptainer --version
[2025-10-12 13:45:12] apptainer version 1.3.2-1.el7
[2025-10-12 13:45:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 13:45:13] c-205-1.aglt2.org
[2025-10-12 13:45:13] apptainer works
[2025-10-12 13:45:13] Set ATHENA_PROC_NUMBER=12
[2025-10-12 13:45:13] Set ATHENA_CORE_NUMBER=12
[2025-10-12 13:45:13] Starting ATLAS job with PandaID=6839867689
[2025-10-12 13:45:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 15:01:42]  *** The last 200 lines of the pilot log: ***
[2025-10-12 15:01:42] 2025-10-12 19:00:40,471 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 15:01:42] 2025-10-12 19:00:41,356 | INFO     | time since job start (4513s) is within the limit (172800.0s)
[2025-10-12 15:01:42] 2025-10-12 19:00:42,556 | WARNING  | process 3054 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 15:01:42] 2025-10-12 19:00:42,556 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839867689/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 15:01:42] 2025-10-12 19:00:42,557 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839867689/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 15:01:42] 2025-10-12 19:00:42,557 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 15:01:42] 2025-10-12 19:00:42,557 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 15:01:42] 2025-10-12 19:00:42,558 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3838572 B
[2025-10-12 15:01:42] 2025-10-12 19:00:42,558 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15536 B
[2025-10-12 15:01:42] 2025-10-12 19:00:42,558 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 15:01:42] 2025-10-12 19:00:42,575 | INFO     | sufficient remaining disk space (29487005696 B)
[2025-10-12 15:01:42] 2025-10-12 19:00:42,576 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 15:01:42] 2025-10-12 19:00:42,577 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6839867689: 4137489 B (within 2537553920 B limit)
[2025-10-12 15:01:42] 2025-10-12 19:00:42,577 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6839867689/HITS.46676269._076568.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 15:01:42] 2025-10-12 19:00:42,577 | INFO     | total size of present files: 0 B (workdir size: 4137489 B)
[2025-10-12 15:01:42] 2025-10-12 19:00:42,577 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6839867689/HITS.46676269._076568.pool.root.1 since it does not exist
[2025-10-12 15:01:42] 2025-10-12 19:00:42,674 | INFO     | number of running child processes to parent process 3054: 1
[2025-10-12 15:01:42] 2025-10-12 19:00:42,674 | INFO     | maximum number of monitored processes: 6
[2025-10-12 15:01:42] 2025-10-12 19:00:43,097 | INFO     | job 6839867689 has state=finished
[2025-10-12 15:01:42] 2025-10-12 19:00:43,098 | INFO     | preparing for final server update for job 6839867689 in state='finished'
[2025-10-12 15:01:42] 2025-10-12 19:00:43,098 | INFO     | this job has now completed (state=finished)
[2025-10-12 15:01:42] 2025-10-12 19:00:43,099 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 15:01:42] 2025-10-12 19:00:43,099 | INFO     | log transfer has been attempted: DONE
[2025-10-12 15:01:42] 2025-10-12 19:00:43,099 | INFO     | job 6839867689 has finished - writing final server update
[2025-10-12 15:01:42] 2025-10-12 19:00:43,100 | INFO     | total number of processed events: 400 (read)
[2025-10-12 15:01:42] 2025-10-12 19:00:43,101 | INFO     | executing command: lscpu
[2025-10-12 15:01:42] 2025-10-12 19:00:43,127 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 15:01:42] 2025-10-12 19:00:43,362 | INFO     | time since job start (4515s) is within the limit (172800.0s)
[2025-10-12 15:01:42] 2025-10-12 19:00:45,176 | INFO     | monitor loop #336: job 0:6839867689 is in state 'finished'
[2025-10-12 15:01:42] 2025-10-12 19:00:45,176 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:01:42] 2025-10-12 19:00:45,384 | INFO     | time since job start (4517s) is within the limit (172800.0s)
[2025-10-12 15:01:42] 2025-10-12 19:00:47,389 | INFO     | time since job start (4519s) is within the limit (172800.0s)
[2025-10-12 15:01:42] 2025-10-12 19:00:47,679 | INFO     | monitor loop #337: job 0:6839867689 is in state 'finished'
[2025-10-12 15:01:42] 2025-10-12 19:00:47,679 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:01:42] 2025-10-12 19:00:47,935 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 15:01:42] 2025-10-12 19:00:47,938 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.6666666666667
[2025-10-12 15:01:42] 2025-10-12 19:00:47,940 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839867689/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 15:01:42] 2025-10-12 19:00:47,941 | INFO     | extracted standard info from prmon json
[2025-10-12 15:01:42] 2025-10-12 19:00:47,941 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 15:01:42] 2025-10-12 19:00:47,941 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 15:01:42] 2025-10-12 19:00:47,941 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 15:01:42] 2025-10-12 19:00:47,942 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 15:01:42] 2025-10-12 19:00:47,943 | INFO     | fitting pss+swap vs Time
[2025-10-12 15:01:42] 2025-10-12 19:00:47,943 | INFO     | sum of square deviations: 93240818.0
[2025-10-12 15:01:42] 2025-10-12 19:00:47,944 | INFO     | sum of deviations: 1508383966.0000002
[2025-10-12 15:01:42] 2025-10-12 19:00:47,944 | INFO     | mean x: 1760293475.0
[2025-10-12 15:01:42] 2025-10-12 19:00:47,944 | INFO     | mean y: 2659818.6417910447
[2025-10-12 15:01:42] 2025-10-12 19:00:47,944 | INFO     | -- intersect: -28474122239.881355
[2025-10-12 15:01:42] 2025-10-12 19:00:47,944 | INFO     | intersect: -28474122239.881355
[2025-10-12 15:01:42] 2025-10-12 19:00:47,944 | INFO     | chi2: 0.008004369493649533
[2025-10-12 15:01:42] 2025-10-12 19:00:47,945 | INFO     | -- intersect: -28474122239.881355
[2025-10-12 15:01:42] 2025-10-12 19:00:47,945 | INFO     | current memory leak: 16.18 B/s (using 67 data points, chi2=0.01)
[2025-10-12 15:01:42] 2025-10-12 19:00:47,945 | INFO     | could have reported an average CPU frequency of 2030 MHz (6 samples)
[2025-10-12 15:01:42] 2025-10-12 19:00:47,945 | INFO     | ..............................
[2025-10-12 15:01:42] 2025-10-12 19:00:47,945 | INFO     | . Timing measurements:
[2025-10-12 15:01:42] 2025-10-12 19:00:47,945 | INFO     | . get job = 0 s
[2025-10-12 15:01:42] 2025-10-12 19:00:47,946 | INFO     | . initial setup = 2 s
[2025-10-12 15:01:42] 2025-10-12 19:00:47,946 | INFO     | . payload setup = 7 s
[2025-10-12 15:01:42] 2025-10-12 19:00:47,946 | INFO     | . stage-in = 0 s
[2025-10-12 15:01:42] 2025-10-12 19:00:47,946 | INFO     | . payload execution = 4482 s
[2025-10-12 15:01:42] 2025-10-12 19:00:47,946 | INFO     | . stage-out = 0 s
[2025-10-12 15:01:42] 2025-10-12 19:00:47,946 | INFO     | . log creation = 0 s
[2025-10-12 15:01:42] 2025-10-12 19:00:47,946 | INFO     | ..............................
[2025-10-12 15:01:42] 2025-10-12 19:00:48,033 | INFO     | 
[2025-10-12 15:01:42] 2025-10-12 19:00:48,033 | INFO     | job summary report
[2025-10-12 15:01:42] 2025-10-12 19:00:48,033 | INFO     | --------------------------------------------------
[2025-10-12 15:01:42] 2025-10-12 19:00:48,034 | INFO     | PanDA job id: 6839867689
[2025-10-12 15:01:42] 2025-10-12 19:00:48,034 | INFO     | task id: 46676269
[2025-10-12 15:01:42] 2025-10-12 19:00:48,034 | INFO     | errors: (none)
[2025-10-12 15:01:42] 2025-10-12 19:00:48,034 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 15:01:42] 2025-10-12 19:00:48,034 | INFO     | pilot state: finished 
[2025-10-12 15:01:42] 2025-10-12 19:00:48,034 | INFO     | transexitcode: 0
[2025-10-12 15:01:42] 2025-10-12 19:00:48,035 | INFO     | exeerrorcode: 0
[2025-10-12 15:01:42] 2025-10-12 19:00:48,035 | INFO     | exeerrordiag: 
[2025-10-12 15:01:42] 2025-10-12 19:00:48,035 | INFO     | exitcode: 0
[2025-10-12 15:01:42] 2025-10-12 19:00:48,035 | INFO     | exitmsg: OK
[2025-10-12 15:01:42] 2025-10-12 19:00:48,035 | INFO     | cpuconsumptiontime: 47282 s
[2025-10-12 15:01:42] 2025-10-12 19:00:48,035 | INFO     | nevents: 400
[2025-10-12 15:01:42] 2025-10-12 19:00:48,036 | INFO     | neventsw: 0
[2025-10-12 15:01:42] 2025-10-12 19:00:48,036 | INFO     | pid: 3054
[2025-10-12 15:01:42] 2025-10-12 19:00:48,036 | INFO     | pgrp: 3054
[2025-10-12 15:01:42] 2025-10-12 19:00:48,036 | INFO     | corecount: 12
[2025-10-12 15:01:42] 2025-10-12 19:00:48,036 | INFO     | event service: False
[2025-10-12 15:01:42] 2025-10-12 19:00:48,036 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4493: 2375250, 4494: 2384248, 4496: 2384304, 4503: 2384654}
[2025-10-12 15:01:42] 2025-10-12 19:00:48,036 | INFO     | --------------------------------------------------
[2025-10-12 15:01:42] 2025-10-12 19:00:48,036 | INFO     | 
[2025-10-12 15:01:42] 2025-10-12 19:00:48,036 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 15:01:42] 2025-10-12 19:00:48,060 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 15:01:42] 2025-10-12 19:00:48,061 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 15:01:42] 2025-10-12 19:00:48,061 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 15:01:42] 2025-10-12 19:00:48,061 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 15:01:42] 2025-10-12 19:00:48,061 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 15:01:42] 2025-10-12 19:00:48,062 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 15:01:42] 2025-10-12 19:00:48,062 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 15:01:42] 2025-10-12 19:00:48,062 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 15:01:42] 2025-10-12 19:00:48,062 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 15:01:42] 2025-10-12 19:00:48,062 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 15:01:42] 2025-10-12 19:00:48,062 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 15:01:42] 2025-10-12 19:00:48,063 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 15:01:42] 2025-10-12 19:00:48,063 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 15:01:42] 2025-10-12 19:00:48,063 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 15:01:42] 2025-10-12 19:00:48,063 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 15:01:42] 2025-10-12 19:00:48,063 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 15:01:42] 2025-10-12 19:00:48,064 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 15:01:42] 2025-10-12 19:00:48,064 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 15:01:42] 2025-10-12 19:00:48,064 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 15:01:42] 2025-10-12 19:00:48,064 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 15:01:42] 2025-10-12 19:00:48,064 | INFO     | job 6839867689 has completed (purged errors)
[2025-10-12 15:01:42] 2025-10-12 19:00:48,065 | INFO     | overall cleanup function is called
[2025-10-12 15:01:42] 2025-10-12 19:00:49,072 | INFO     | --- collectZombieJob: --- 10, [3054]
[2025-10-12 15:01:42] 2025-10-12 19:00:49,073 | INFO     | zombie collector waiting for pid 3054
[2025-10-12 15:01:42] 2025-10-12 19:00:49,073 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 15:01:42] 2025-10-12 19:00:49,073 | INFO     | collected zombie processes
[2025-10-12 15:01:42] 2025-10-12 19:00:49,073 | INFO     | will attempt to kill all subprocesses of pid=3054
[2025-10-12 15:01:42] 2025-10-12 19:00:49,166 | INFO     | process IDs to be killed: [3054] (in reverse order)
[2025-10-12 15:01:42] 2025-10-12 19:00:49,216 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 15:01:42] 2025-10-12 19:00:49,217 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 15:01:42] 2025-10-12 19:00:49,220 | INFO     | did not find any defunct processes belonging to 3054
[2025-10-12 15:01:42] 2025-10-12 19:00:49,224 | INFO     | did not find any defunct processes belonging to 3054
[2025-10-12 15:01:42] 2025-10-12 19:00:49,224 | INFO     | ready for new job
[2025-10-12 15:01:42] 2025-10-12 19:00:49,224 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 15:01:42] 2025-10-12 19:00:49,226 | INFO     | ***************************************
[2025-10-12 15:01:42] 2025-10-12 19:00:49,227 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 15:01:42] 2025-10-12 19:00:49,227 | INFO     | ***************************************
[2025-10-12 15:01:42] 2025-10-12 19:00:49,227 | INFO     | 
[2025-10-12 15:01:42] 2025-10-12 19:00:49,227 | INFO     | architecture information:
[2025-10-12 15:01:42] 2025-10-12 19:00:49,228 | INFO     | executing command: cat /etc/os-release
[2025-10-12 15:01:42] 2025-10-12 19:00:49,242 | INFO     | cat /etc/os-release:
[2025-10-12 15:01:42] NAME="CentOS Linux"
[2025-10-12 15:01:42] VERSION="7 (Core)"
[2025-10-12 15:01:42] ID="centos"
[2025-10-12 15:01:42] ID_LIKE="rhel fedora"
[2025-10-12 15:01:42] VERSION_ID="7"
[2025-10-12 15:01:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 15:01:42] ANSI_COLOR="0;31"
[2025-10-12 15:01:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 15:01:42] HOME_URL="https://www.centos.org/"
[2025-10-12 15:01:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 15:01:42] 
[2025-10-12 15:01:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 15:01:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 15:01:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 15:01:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 15:01:42] 
[2025-10-12 15:01:42] 2025-10-12 19:00:49,243 | INFO     | ***************************************
[2025-10-12 15:01:42] 2025-10-12 19:00:49,746 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 15:01:42] 2025-10-12 19:00:49,763 | INFO     | sufficient remaining disk space (29492248576 B)
[2025-10-12 15:01:42] 2025-10-12 19:00:49,764 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 15:01:42] 2025-10-12 19:00:49,764 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 15:01:42] 2025-10-12 19:00:49,764 | INFO     | update_server=False
[2025-10-12 15:01:42] 2025-10-12 19:00:49,764 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 15:01:42] 2025-10-12 19:00:49,764 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:01:42] 2025-10-12 19:00:49,765 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 15:01:42] 2025-10-12 19:00:50,182 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 15:01:42] 2025-10-12 19:00:50,182 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 15:01:42] 2025-10-12 19:00:50,182 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:01:42] 2025-10-12 19:00:50,183 | INFO     | will abort loop
[2025-10-12 15:01:42] 2025-10-12 19:00:50,428 | INFO     | all data control threads have been joined
[2025-10-12 15:01:42] 2025-10-12 19:00:50,770 | INFO     | [job] retrieve thread has finished
[2025-10-12 15:01:42] 2025-10-12 19:00:50,770 | INFO     | [job] queue monitor thread has finished
[2025-10-12 15:01:42] 2025-10-12 19:00:50,774 | INFO     | all payload control threads have been joined
[2025-10-12 15:01:42] 2025-10-12 19:00:51,061 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 15:01:42] 2025-10-12 19:00:51,112 | INFO     | [job] validate thread has finished
[2025-10-12 15:01:42] 2025-10-12 19:00:51,146 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 15:01:42] 2025-10-12 19:00:51,155 | INFO     | all job control threads have been joined
[2025-10-12 15:01:42] 2025-10-12 19:00:51,188 | INFO     | [job] job monitor thread has finished
[2025-10-12 15:01:42] 2025-10-12 19:00:51,433 | INFO     | [data] control thread has finished
[2025-10-12 15:01:42] 2025-10-12 19:00:51,535 | INFO     | [payload] validate_post thread has finished
[2025-10-12 15:01:42] 2025-10-12 19:00:51,763 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 15:01:42] 2025-10-12 19:00:51,771 | INFO     | [data] copytool_out thread has finished
[2025-10-12 15:01:42] 2025-10-12 19:00:51,779 | INFO     | [payload] control thread has finished
[2025-10-12 15:01:42] 2025-10-12 19:00:51,796 | INFO     | [payload] failed_post thread has finished
[2025-10-12 15:01:42] 2025-10-12 19:00:52,151 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 15:01:42] 2025-10-12 19:00:52,161 | INFO     | [job] control thread has finished
[2025-10-12 15:01:42] 2025-10-12 19:00:52,164 | INFO     | [data] copytool_in thread has finished
[2025-10-12 15:01:42] 2025-10-12 19:00:55,067 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 15:01:42] 2025-10-12 19:01:00,689 | INFO     | job.realtimelogging is not enabled
[2025-10-12 15:01:42] 2025-10-12 19:01:01,694 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 15:01:42] 2025-10-12 19:01:20,595 | INFO     | PID=28890 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 15:01:42] 2025-10-12 19:01:20,595 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 15:01:42] 2025-10-12 19:01:20,595 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 15:01:42] 2025-10-12 19:01:20,595 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 15:01:42] 2025-10-12 19:01:35,388 | INFO     | [monitor] cgroup control has ended
[2025-10-12 15:01:42] 2025-10-12 19:01:37,045 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140053769426752)>', '<ExcThread(monitor, started 140052877260544)>']
[2025-10-12 15:01:42] 2025-10-12 19:01:37,674 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 15:01:42] 2025-10-12 19:01:37,674 | INFO     | [monitor] control thread has ended
[2025-10-12 15:01:42] 2025-10-12 19:01:42,048 | INFO     | all workflow threads have been joined
[2025-10-12 15:01:42] 2025-10-12 19:01:42,048 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 15:01:42] 2025-10-12 19:01:42,048 | INFO     | traces error code: 0
[2025-10-12 15:01:42] 2025-10-12 19:01:42,049 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 15:01:42] 2025-10-12 19:01:42,146 [wrapper] ==== pilot stdout END ====
[2025-10-12 15:01:42] 2025-10-12 19:01:42,150 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 15:01:42] 2025-10-12 19:01:42,153 [wrapper] pilotpid: 28890
[2025-10-12 15:01:42] 2025-10-12 19:01:42,157 [wrapper] Pilot exit status: 0
[2025-10-12 15:01:42] 2025-10-12 19:01:42,173 [wrapper] pandaids: 6839867689
[2025-10-12 15:01:42] 2025-10-12 19:01:42,222 [wrapper] cleanup supervisor_pilot  3267 28891
[2025-10-12 15:01:42] 2025-10-12 19:01:42,227 [wrapper] Test setup, not cleaning
[2025-10-12 15:01:42] 2025-10-12 19:01:42,231 [wrapper] apfmon messages muted
[2025-10-12 15:01:42] 2025-10-12 19:01:42,235 [wrapper] ==== wrapper stdout END ====
[2025-10-12 15:01:42] 2025-10-12 19:01:42,239 [wrapper] ==== wrapper stderr END ====
[2025-10-12 15:01:42]  *** Error codes and diagnostics ***
[2025-10-12 15:01:42]     "exeErrorCode": 0,
[2025-10-12 15:01:42]     "exeErrorDiag": "",
[2025-10-12 15:01:42]     "pilotErrorCode": 0,
[2025-10-12 15:01:42]     "pilotErrorDiag": "",
[2025-10-12 15:01:42]  *** Listing of results directory ***
[2025-10-12 15:01:42] total 406908
[2025-10-12 15:01:42] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 06:57 pilot3.tar.gz
[2025-10-12 15:01:42] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 07:02 queuedata.json
[2025-10-12 15:01:42] -rwx------ 1 boincer umatlas     36292 Oct 12 07:02 runpilot2-wrapper.sh
[2025-10-12 15:01:42] -rw-r--r-- 1 boincer umatlas       100 Oct 12 13:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 15:01:42] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 13:45 run_atlas
[2025-10-12 15:01:42] -rw-r--r-- 1 boincer umatlas       105 Oct 12 13:45 job.xml
[2025-10-12 15:01:42] -rw-r--r-- 2 boincer umatlas 218801603 Oct 12 13:45 EVNT.46676267._003651.pool.root.1
[2025-10-12 15:01:42] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 13:45 start_atlas.sh
[2025-10-12 15:01:42] drwxrwx--x 2 boincer umatlas      4096 Oct 12 13:45 shared
[2025-10-12 15:01:42] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 13:45 input.tar.gz
[2025-10-12 15:01:42] -rw-r--r-- 1 boincer umatlas         0 Oct 12 13:45 boinc_lockfile
[2025-10-12 15:01:42] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 13:45 pandaJob.out
[2025-10-12 15:01:42] -rw------- 1 boincer umatlas    975528 Oct 12 13:45 agis_schedconf.cvmfs.json
[2025-10-12 15:01:42] -rw------- 1 boincer umatlas   1560580 Oct 12 13:45 agis_ddmendpoints.agis.ALL.json
[2025-10-12 15:01:42] drwx------ 5 boincer umatlas      4096 Oct 12 13:45 pilot3
[2025-10-12 15:01:42] -rw------- 1 boincer umatlas 191912574 Oct 12 15:00 HITS.46676269._076568.pool.root.1
[2025-10-12 15:01:42] -rw-r--r-- 1 boincer umatlas       529 Oct 12 15:00 boinc_task_state.xml
[2025-10-12 15:01:42] -rw------- 1 boincer umatlas        95 Oct 12 15:00 pilot_heartbeat.json
[2025-10-12 15:01:42] -rw------- 1 boincer umatlas      1049 Oct 12 15:00 memory_monitor_summary.json
[2025-10-12 15:01:42] -rw------- 1 boincer umatlas    373715 Oct 12 15:00 log.46676269._076568.job.log.tgz.1
[2025-10-12 15:01:42] -rw------- 1 boincer umatlas      7848 Oct 12 15:00 heartbeat.json
[2025-10-12 15:01:42] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 15:01 init_data.xml
[2025-10-12 15:01:42] -rw-r--r-- 1 boincer umatlas        27 Oct 12 15:01 wrapper_checkpoint.txt
[2025-10-12 15:01:42] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 15:01 boinc_mmap_file
[2025-10-12 15:01:42] -rw------- 1 boincer umatlas      5004 Oct 12 15:01 pilotlog.txt
[2025-10-12 15:01:42] -rw------- 1 boincer umatlas    655521 Oct 12 15:01 log.46676269._076568.job.log.1
[2025-10-12 15:01:42] -rw------- 1 boincer umatlas       357 Oct 12 15:01 output.list
[2025-10-12 15:01:42] -rw-r--r-- 1 boincer umatlas       620 Oct 12 15:01 runtime_log
[2025-10-12 15:01:42] -rw------- 1 boincer umatlas   1044480 Oct 12 15:01 result.tar.gz
[2025-10-12 15:01:42] -rw-r--r-- 1 boincer umatlas      8700 Oct 12 15:01 runtime_log.err
[2025-10-12 15:01:42] -rw------- 1 boincer umatlas       658 Oct 12 15:01 aXaKDms18R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmsXjNDmXnaxrn.diag
[2025-10-12 15:01:42] -rw-r--r-- 1 boincer umatlas     22384 Oct 12 15:01 stderr.txt
[2025-10-12 15:01:42] HITS file was successfully produced:
[2025-10-12 15:01:42] -rw------- 1 boincer umatlas 191912574 Oct 12 15:00 shared/HITS.pool.root.1
[2025-10-12 15:01:42]  *** Contents of shared directory: ***
[2025-10-12 15:01:42] total 402692
[2025-10-12 15:01:42] -rw-r--r-- 2 boincer umatlas 218801603 Oct 12 13:45 ATLAS.root_0
[2025-10-12 15:01:42] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 13:45 start_atlas.sh
[2025-10-12 15:01:42] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 13:45 input.tar.gz
[2025-10-12 15:01:42] -rw------- 1 boincer umatlas 191912574 Oct 12 15:00 HITS.pool.root.1
[2025-10-12 15:01:42] -rw------- 1 boincer umatlas   1044480 Oct 12 15:01 result.tar.gz
15:01:43 (25201): run_atlas exited; CPU time 47253.252512
15:01:43 (25201): called boinc_finish(0)

</stderr_txt>
]]>

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