Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:54:07 (3400162): wrapper (7.7.26015): starting
15:54:07 (3400162): wrapper: running run_atlas (--nthreads 11)
[2025-10-12 15:54:07] Arguments: --nthreads 11
[2025-10-12 15:54:07] Threads: 11
[2025-10-12 15:54:07] Checking for CVMFS
[2025-10-12 15:54:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 15:54:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 15:54:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 15:54:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 15:54:08] 2.13.2.0 128560 116421 191908 151635 2 65 29887735 39288833 4157 16776704 1 73421899 99.571 80448103 35345 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 15:54:08] CVMFS is ok
[2025-10-12 15:54:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 15:54:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 15:54:08] Further information can be found at the LHC@home message board.
[2025-10-12 15:54:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 15:54:08] Checking for apptainer binary...
[2025-10-12 15:54:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 15:54:08] Running /usr/bin/apptainer --version
[2025-10-12 15:54:08] apptainer version 1.4.3-1.el9
[2025-10-12 15:54:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 15:54:08] c-211-5.aglt2.org
[2025-10-12 15:54:08] apptainer works
[2025-10-12 15:54:08] Set ATHENA_PROC_NUMBER=11
[2025-10-12 15:54:08] Set ATHENA_CORE_NUMBER=11
[2025-10-12 15:54:08] Starting ATLAS job with PandaID=6839928243
[2025-10-12 15:54:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:20:35]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:20:35]  status_code=0
[2025-10-12 17:20:35]  storage_token=
[2025-10-12 17:20:35]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839928243/log.46676269._077682.job.log.tgz.1
[2025-10-12 17:20:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/08/91/log.46676269._077682.job.log.tgz.1
[2025-10-12 17:20:35]  workdir=None
[2025-10-12 17:20:35] ]
[2025-10-12 17:20:35] 2025-10-12 21:19:35,482 | INFO     | transferring file log.46676269._077682.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839928243/log.46676269._077682.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 17:20:35] 2025-10-12 21:19:35,482 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839928243/log.46676269._077682.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._077682.job
[2025-10-12 17:20:35] 2025-10-12 21:19:35,506 | INFO     | adding to output.list: log.46676269._077682.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/08/91/log.46676269._077682.job.log.tg
[2025-10-12 17:20:35] 2025-10-12 21:19:35,507 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 17:20:35] 2025-10-12 21:19:35,508 | INFO     | summary of transferred files:
[2025-10-12 17:20:35] 2025-10-12 21:19:35,508 | INFO     |  -- lfn=log.46676269._077682.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 17:20:35] 2025-10-12 21:19:35,508 | INFO     | stage-out finished correctly
[2025-10-12 17:20:35] 2025-10-12 21:19:36,784 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 17:20:35] 2025-10-12 21:19:36,979 | INFO     | time since job start (5116s) is within the limit (172800.0s)
[2025-10-12 17:20:35] 2025-10-12 21:19:37,984 | INFO     | job 6839928243 has state=finished
[2025-10-12 17:20:35] 2025-10-12 21:19:38,013 | INFO     | preparing for final server update for job 6839928243 in state='finished'
[2025-10-12 17:20:35] 2025-10-12 21:19:38,014 | INFO     | this job has now completed (state=finished)
[2025-10-12 17:20:35] 2025-10-12 21:19:38,014 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 17:20:35] 2025-10-12 21:19:38,014 | INFO     | log transfer has been attempted: DONE
[2025-10-12 17:20:35] 2025-10-12 21:19:38,014 | INFO     | job 6839928243 has finished - writing final server update
[2025-10-12 17:20:35] 2025-10-12 21:19:38,015 | INFO     | total number of processed events: 400 (read)
[2025-10-12 17:20:35] 2025-10-12 21:19:38,024 | INFO     | executing command: lscpu
[2025-10-12 17:20:35] 2025-10-12 21:19:38,071 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 17:20:35] 2025-10-12 21:19:39,016 | INFO     | time since job start (5119s) is within the limit (172800.0s)
[2025-10-12 17:20:35] 2025-10-12 21:19:39,139 | WARNING  | process 3416174 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 17:20:35] 2025-10-12 21:19:39,140 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839928243/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:20:35] 2025-10-12 21:19:39,376 | INFO     | number of running child processes to parent process 3416174: 1
[2025-10-12 17:20:35] 2025-10-12 21:19:39,376 | INFO     | maximum number of monitored processes: 6
[2025-10-12 17:20:35] 2025-10-12 21:19:41,024 | INFO     | time since job start (5121s) is within the limit (172800.0s)
[2025-10-12 17:20:35] 2025-10-12 21:19:41,901 | INFO     | monitor loop #366: job 0:6839928243 is in state 'finished'
[2025-10-12 17:20:35] 2025-10-12 21:19:41,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 17:20:35] 2025-10-12 21:19:42,344 | INFO     | PID=3403869 has CPU usage=11.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 17:20:35] 2025-10-12 21:19:42,344 | INFO     | .. there are 6 such processes running
[2025-10-12 17:20:35] 2025-10-12 21:19:43,345 | INFO     | time since job start (5123s) is within the limit (172800.0s)
[2025-10-12 17:20:35] 2025-10-12 21:19:43,370 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 17:20:35] 2025-10-12 21:19:43,377 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1794999999993
[2025-10-12 17:20:35] 2025-10-12 21:19:43,385 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839928243/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 17:20:35] 2025-10-12 21:19:43,386 | INFO     | extracted standard info from prmon json
[2025-10-12 17:20:35] 2025-10-12 21:19:43,386 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 17:20:35] 2025-10-12 21:19:43,386 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 17:20:35] 2025-10-12 21:19:43,386 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 17:20:35] 2025-10-12 21:19:43,387 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 17:20:35] 2025-10-12 21:19:43,389 | INFO     | fitting pss+swap vs Time
[2025-10-12 17:20:35] 2025-10-12 21:19:43,390 | INFO     | sum of square deviations: 141542329.7922077
[2025-10-12 17:20:35] 2025-10-12 21:19:43,390 | INFO     | sum of deviations: -3325334264.662339
[2025-10-12 17:20:35] 2025-10-12 21:19:43,390 | INFO     | mean x: 1760301508.051948
[2025-10-12 17:20:35] 2025-10-12 21:19:43,391 | INFO     | mean y: 2684376.4155844157
[2025-10-12 17:20:35] 2025-10-12 21:19:43,391 | INFO     | -- intersect: 41358446496.873405
[2025-10-12 17:20:35] 2025-10-12 21:19:43,391 | INFO     | intersect: 41358446496.873405
[2025-10-12 17:20:35] 2025-10-12 21:19:43,391 | INFO     | chi2: 0.015076954918263503
[2025-10-12 17:20:35] 2025-10-12 21:19:43,392 | INFO     | -- intersect: 41358446496.873405
[2025-10-12 17:20:35] 2025-10-12 21:19:43,392 | INFO     | current memory leak: -23.49 B/s (using 77 data points, chi2=0.02)
[2025-10-12 17:20:35] 2025-10-12 21:19:43,392 | INFO     | could have reported an average CPU frequency of 2616 MHz (6 samples)
[2025-10-12 17:20:35] 2025-10-12 21:19:43,393 | INFO     | ..............................
[2025-10-12 17:20:35] 2025-10-12 21:19:43,393 | INFO     | . Timing measurements:
[2025-10-12 17:20:35] 2025-10-12 21:19:43,393 | INFO     | . get job = 0 s
[2025-10-12 17:20:35] 2025-10-12 21:19:43,393 | INFO     | . initial setup = 2 s
[2025-10-12 17:20:35] 2025-10-12 21:19:43,393 | INFO     | . payload setup = 5 s
[2025-10-12 17:20:35] 2025-10-12 21:19:43,393 | INFO     | . stage-in = 0 s
[2025-10-12 17:20:35] 2025-10-12 21:19:43,393 | INFO     | . payload execution = 5089 s
[2025-10-12 17:20:35] 2025-10-12 21:19:43,393 | INFO     | . stage-out = 1 s
[2025-10-12 17:20:35] 2025-10-12 21:19:43,393 | INFO     | . log creation = 0 s
[2025-10-12 17:20:35] 2025-10-12 21:19:43,393 | INFO     | ..............................
[2025-10-12 17:20:35] 2025-10-12 21:19:43,577 | INFO     | 
[2025-10-12 17:20:35] 2025-10-12 21:19:43,577 | INFO     | job summary report
[2025-10-12 17:20:35] 2025-10-12 21:19:43,578 | INFO     | --------------------------------------------------
[2025-10-12 17:20:35] 2025-10-12 21:19:43,578 | INFO     | PanDA job id: 6839928243
[2025-10-12 17:20:35] 2025-10-12 21:19:43,578 | INFO     | task id: 46676269
[2025-10-12 17:20:35] 2025-10-12 21:19:43,578 | INFO     | errors: (none)
[2025-10-12 17:20:35] 2025-10-12 21:19:43,578 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 17:20:35] 2025-10-12 21:19:43,578 | INFO     | pilot state: finished 
[2025-10-12 17:20:35] 2025-10-12 21:19:43,578 | INFO     | transexitcode: 0
[2025-10-12 17:20:35] 2025-10-12 21:19:43,578 | INFO     | exeerrorcode: 0
[2025-10-12 17:20:35] 2025-10-12 21:19:43,578 | INFO     | exeerrordiag: 
[2025-10-12 17:20:35] 2025-10-12 21:19:43,579 | INFO     | exitcode: 0
[2025-10-12 17:20:35] 2025-10-12 21:19:43,579 | INFO     | exitmsg: OK
[2025-10-12 17:20:35] 2025-10-12 21:19:43,579 | INFO     | cpuconsumptiontime: 49735 s
[2025-10-12 17:20:35] 2025-10-12 21:19:43,579 | INFO     | nevents: 400
[2025-10-12 17:20:35] 2025-10-12 21:19:43,579 | INFO     | neventsw: 0
[2025-10-12 17:20:35] 2025-10-12 21:19:43,579 | INFO     | pid: 3416174
[2025-10-12 17:20:35] 2025-10-12 21:19:43,579 | INFO     | pgrp: 3416174
[2025-10-12 17:20:35] 2025-10-12 21:19:43,579 | INFO     | corecount: 11
[2025-10-12 17:20:35] 2025-10-12 21:19:43,579 | INFO     | event service: False
[2025-10-12 17:20:35] 2025-10-12 21:19:43,580 | INFO     | sizes: {0: 2348686, 1: 2348885, 5: 2349147, 11: 2349203, 5098: 2375592, 5100: 2384590, 5102: 2384774, 5108: 2384968}
[2025-10-12 17:20:35] 2025-10-12 21:19:43,580 | INFO     | --------------------------------------------------
[2025-10-12 17:20:35] 2025-10-12 21:19:43,580 | INFO     | 
[2025-10-12 17:20:35] 2025-10-12 21:19:43,580 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 17:20:35] 2025-10-12 21:19:43,603 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 17:20:35] 2025-10-12 21:19:43,604 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 17:20:35] 2025-10-12 21:19:43,604 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 17:20:35] 2025-10-12 21:19:43,604 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 17:20:35] 2025-10-12 21:19:43,604 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:20:35] 2025-10-12 21:19:43,604 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:20:35] 2025-10-12 21:19:43,604 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:20:35] 2025-10-12 21:19:43,605 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:20:35] 2025-10-12 21:19:43,605 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:20:35] 2025-10-12 21:19:43,605 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:20:35] 2025-10-12 21:19:43,605 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:20:35] 2025-10-12 21:19:43,605 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:20:35] 2025-10-12 21:19:43,605 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:20:35] 2025-10-12 21:19:43,605 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:20:35] 2025-10-12 21:19:43,605 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:20:35] 2025-10-12 21:19:43,606 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:20:35] 2025-10-12 21:19:43,606 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:20:35] 2025-10-12 21:19:43,606 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:20:35] 2025-10-12 21:19:43,606 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:20:35] 2025-10-12 21:19:43,606 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:20:35] 2025-10-12 21:19:43,606 | INFO     | job 6839928243 has completed (purged errors)
[2025-10-12 17:20:35] 2025-10-12 21:19:43,606 | INFO     | overall cleanup function is called
[2025-10-12 17:20:35] 2025-10-12 21:19:44,615 | INFO     | --- collectZombieJob: --- 10, [3416174]
[2025-10-12 17:20:35] 2025-10-12 21:19:44,616 | INFO     | zombie collector waiting for pid 3416174
[2025-10-12 17:20:35] 2025-10-12 21:19:44,616 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:20:35] 2025-10-12 21:19:44,616 | INFO     | collected zombie processes
[2025-10-12 17:20:35] 2025-10-12 21:19:44,616 | INFO     | will attempt to kill all subprocesses of pid=3416174
[2025-10-12 17:20:35] 2025-10-12 21:19:44,853 | INFO     | process IDs to be killed: [3416174] (in reverse order)
[2025-10-12 17:20:35] 2025-10-12 21:19:44,929 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:20:35] 2025-10-12 21:19:44,929 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:20:35] 2025-10-12 21:19:44,938 | INFO     | did not find any defunct processes belonging to 3416174
[2025-10-12 17:20:35] 2025-10-12 21:19:44,946 | INFO     | did not find any defunct processes belonging to 3416174
[2025-10-12 17:20:35] 2025-10-12 21:19:44,946 | INFO     | ready for new job
[2025-10-12 17:20:35] 2025-10-12 21:19:44,946 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:20:35] 2025-10-12 21:19:44,948 | INFO     | ***************************************
[2025-10-12 17:20:35] 2025-10-12 21:19:44,948 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:20:35] 2025-10-12 21:19:44,948 | INFO     | ***************************************
[2025-10-12 17:20:35] 2025-10-12 21:19:44,948 | INFO     | 
[2025-10-12 17:20:35] 2025-10-12 21:19:44,951 | INFO     | architecture information:
[2025-10-12 17:20:35] 2025-10-12 21:19:44,951 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:20:35] 2025-10-12 21:19:44,971 | INFO     | cat /etc/os-release:
[2025-10-12 17:20:35] NAME="CentOS Linux"
[2025-10-12 17:20:35] VERSION="7 (Core)"
[2025-10-12 17:20:35] ID="centos"
[2025-10-12 17:20:35] ID_LIKE="rhel fedora"
[2025-10-12 17:20:35] VERSION_ID="7"
[2025-10-12 17:20:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:20:35] ANSI_COLOR="0;31"
[2025-10-12 17:20:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:20:35] HOME_URL="https://www.centos.org/"
[2025-10-12 17:20:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:20:35] 
[2025-10-12 17:20:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:20:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:20:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:20:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:20:35] 
[2025-10-12 17:20:35] 2025-10-12 21:19:44,971 | INFO     | ***************************************
[2025-10-12 17:20:35] 2025-10-12 21:19:45,474 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 17:20:35] 2025-10-12 21:19:45,493 | INFO     | sufficient remaining disk space (52468645888 B)
[2025-10-12 17:20:35] 2025-10-12 21:19:45,493 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:20:35] 2025-10-12 21:19:45,494 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:20:35] 2025-10-12 21:19:45,494 | INFO     | update_server=False
[2025-10-12 17:20:35] 2025-10-12 21:19:45,494 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:20:35] 2025-10-12 21:19:45,494 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:20:35] 2025-10-12 21:19:45,494 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:20:35] 2025-10-12 21:19:45,495 | INFO     | aborting loop
[2025-10-12 17:20:35] 2025-10-12 21:19:45,520 | INFO     | all data control threads have been joined
[2025-10-12 17:20:35] 2025-10-12 21:19:46,086 | INFO     | all job control threads have been joined
[2025-10-12 17:20:35] 2025-10-12 21:19:46,149 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:20:35] 2025-10-12 21:19:46,334 | INFO     | all payload control threads have been joined
[2025-10-12 17:20:35] 2025-10-12 21:19:46,500 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:20:35] 2025-10-12 21:19:46,500 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:20:35] 2025-10-12 21:19:46,501 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:20:35] 2025-10-12 21:19:46,502 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:20:35] 2025-10-12 21:19:46,525 | INFO     | [data] control thread has finished
[2025-10-12 17:20:35] 2025-10-12 21:19:46,641 | INFO     | [job] validate thread has finished
[2025-10-12 17:20:35] 2025-10-12 21:19:47,088 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:20:35] 2025-10-12 21:19:47,092 | INFO     | [job] control thread has finished
[2025-10-12 17:20:35] 2025-10-12 21:19:47,340 | INFO     | [payload] control thread has finished
[2025-10-12 17:20:35] 2025-10-12 21:19:47,343 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:20:35] 2025-10-12 21:19:47,545 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:20:35] 2025-10-12 21:19:47,676 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:20:35] 2025-10-12 21:19:47,822 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:20:35] 2025-10-12 21:19:47,860 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:20:35] 2025-10-12 21:19:48,155 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:20:35] 2025-10-12 21:19:51,555 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:20:35] 2025-10-12 21:19:55,588 | INFO     | job.realtimelogging is not enabled
[2025-10-12 17:20:35] 2025-10-12 21:19:56,593 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:20:35] 2025-10-12 21:20:16,637 | INFO     | PID=3403869 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:20:35] 2025-10-12 21:20:16,637 | INFO     | .. there are 6 such processes running
[2025-10-12 17:20:35] 2025-10-12 21:20:16,637 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:20:35] 2025-10-12 21:20:16,637 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:20:35] 2025-10-12 21:20:16,638 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:20:35] 2025-10-12 21:20:28,240 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:20:35] 2025-10-12 21:20:29,921 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139705122584384)>', '<ExcThread(monitor, started 139704397715200)>']
[2025-10-12 17:20:35] 2025-10-12 21:20:30,726 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:20:35] 2025-10-12 21:20:30,726 | INFO     | [monitor] control thread has ended
[2025-10-12 17:20:35] 2025-10-12 21:20:34,947 | INFO     | all workflow threads have been joined
[2025-10-12 17:20:35] 2025-10-12 21:20:34,947 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:20:35] 2025-10-12 21:20:34,948 | INFO     | traces error code: 0
[2025-10-12 17:20:35] 2025-10-12 21:20:34,948 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:20:35] 2025-10-12 21:20:35,124 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:20:35] 2025-10-12 21:20:35,128 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:20:35] 2025-10-12 21:20:35,131 [wrapper] pilotpid: 3403869
[2025-10-12 17:20:35] 2025-10-12 21:20:35,134 [wrapper] Pilot exit status: 0
[2025-10-12 17:20:35] 2025-10-12 21:20:35,147 [wrapper] pandaids: 6839928243
[2025-10-12 17:20:35] 2025-10-12 21:20:35,198 [wrapper] cleanup supervisor_pilot 3538980 3403870
[2025-10-12 17:20:35] 2025-10-12 21:20:35,202 [wrapper] Test setup, not cleaning
[2025-10-12 17:20:35] 2025-10-12 21:20:35,206 [wrapper] apfmon messages muted
[2025-10-12 17:20:35] 2025-10-12 21:20:35,209 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:20:35] 2025-10-12 21:20:35,212 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:20:35]  *** Error codes and diagnostics ***
[2025-10-12 17:20:35]     "exeErrorCode": 0,
[2025-10-12 17:20:35]     "exeErrorDiag": "",
[2025-10-12 17:20:35]     "pilotErrorCode": 0,
[2025-10-12 17:20:35]     "pilotErrorDiag": "",
[2025-10-12 17:20:35]  *** Listing of results directory ***
[2025-10-12 17:20:35] total 410012
[2025-10-12 17:20:35] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 07:54 pilot3.tar.gz
[2025-10-12 17:20:35] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 08:05 queuedata.json
[2025-10-12 17:20:35] -rwx------. 1 boincer umatlas     36292 Oct 12 08:07 runpilot2-wrapper.sh
[2025-10-12 17:20:35] -rw-r--r--. 1 boincer umatlas       100 Oct 12 15:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:20:35] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 15:54 run_atlas
[2025-10-12 17:20:35] -rw-r--r--. 1 boincer umatlas       105 Oct 12 15:54 job.xml
[2025-10-12 17:20:35] -rw-r--r--. 2 boincer umatlas 221858155 Oct 12 15:54 EVNT.46676267._003723.pool.root.1
[2025-10-12 17:20:35] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 15:54 start_atlas.sh
[2025-10-12 17:20:35] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 15:54 shared
[2025-10-12 17:20:35] -rw-r--r--. 2 boincer umatlas    569680 Oct 12 15:54 input.tar.gz
[2025-10-12 17:20:35] -rw-r--r--. 1 boincer umatlas         0 Oct 12 15:54 boinc_lockfile
[2025-10-12 17:20:35] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 15:54 pandaJob.out
[2025-10-12 17:20:35] -rw-------. 1 boincer umatlas    975536 Oct 12 15:54 agis_schedconf.cvmfs.json
[2025-10-12 17:20:35] -rw-------. 1 boincer umatlas   1560580 Oct 12 15:54 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:20:35] drwx------. 5 boincer umatlas      4096 Oct 12 15:54 pilot3
[2025-10-12 17:20:35] -rw-r--r--. 1 boincer umatlas      6659 Oct 12 17:11 init_data.xml
[2025-10-12 17:20:35] -rw-------. 1 boincer umatlas 191883549 Oct 12 17:18 HITS.46676269._077682.pool.root.1
[2025-10-12 17:20:35] -rw-r--r--. 1 boincer umatlas       529 Oct 12 17:19 boinc_task_state.xml
[2025-10-12 17:20:35] -rw-------. 1 boincer umatlas      1033 Oct 12 17:19 memory_monitor_summary.json
[2025-10-12 17:20:35] -rw-------. 1 boincer umatlas    366169 Oct 12 17:19 log.46676269._077682.job.log.tgz.1
[2025-10-12 17:20:35] -rw-------. 1 boincer umatlas        95 Oct 12 17:19 pilot_heartbeat.json
[2025-10-12 17:20:35] -rw-------. 1 boincer umatlas      7815 Oct 12 17:19 heartbeat.json
[2025-10-12 17:20:35] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 17:20 boinc_mmap_file
[2025-10-12 17:20:35] -rw-r--r--. 1 boincer umatlas        27 Oct 12 17:20 wrapper_checkpoint.txt
[2025-10-12 17:20:35] -rw-------. 1 boincer umatlas      4895 Oct 12 17:20 pilotlog.txt
[2025-10-12 17:20:35] -rw-------. 1 boincer umatlas    736577 Oct 12 17:20 log.46676269._077682.job.log.1
[2025-10-12 17:20:35] -rw-------. 1 boincer umatlas       357 Oct 12 17:20 output.list
[2025-10-12 17:20:35] -rw-r--r--. 1 boincer umatlas       620 Oct 12 17:20 runtime_log
[2025-10-12 17:20:35] -rw-------. 1 boincer umatlas   1126400 Oct 12 17:20 result.tar.gz
[2025-10-12 17:20:35] -rw-r--r--. 1 boincer umatlas      8700 Oct 12 17:20 runtime_log.err
[2025-10-12 17:20:35] -rw-------. 1 boincer umatlas       652 Oct 12 17:20 3uwKDm019R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmLqTMDmtW9oNm.diag
[2025-10-12 17:20:35] -rw-r--r--. 1 boincer umatlas     22191 Oct 12 17:20 stderr.txt
[2025-10-12 17:20:35] HITS file was successfully produced:
[2025-10-12 17:20:35] -rw-------. 1 boincer umatlas 191883549 Oct 12 17:18 shared/HITS.pool.root.1
[2025-10-12 17:20:35]  *** Contents of shared directory: ***
[2025-10-12 17:20:35] total 405728
[2025-10-12 17:20:35] -rw-r--r--. 2 boincer umatlas 221858155 Oct 12 15:54 ATLAS.root_0
[2025-10-12 17:20:35] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 15:54 start_atlas.sh
[2025-10-12 17:20:35] -rw-r--r--. 2 boincer umatlas    569680 Oct 12 15:54 input.tar.gz
[2025-10-12 17:20:35] -rw-------. 1 boincer umatlas 191883549 Oct 12 17:18 HITS.pool.root.1
[2025-10-12 17:20:35] -rw-------. 1 boincer umatlas   1126400 Oct 12 17:20 result.tar.gz
17:20:36 (3400162): run_atlas exited; CPU time 49853.153615
17:20:36 (3400162): called boinc_finish(0)

</stderr_txt>
]]>

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