Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:43:12 (3790867): wrapper (7.7.26015): starting
05:43:12 (3790867): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 05:43:12] Arguments: --nthreads 4
[2025-10-13 05:43:12] Threads: 4
[2025-10-13 05:43:12] Checking for CVMFS
[2025-10-13 05:43:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:43:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:43:12] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:43:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:43:13] 2.9.2.0 1999482 5183 95896 151647 2 56 33818774 36864000 0 130560 0 4649749 99.992 180208 847 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 05:43:13] CVMFS is ok
[2025-10-13 05:43:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:43:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:43:13] Further information can be found at the LHC@home message board.
[2025-10-13 05:43:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:43:13] Checking for apptainer binary...
[2025-10-13 05:43:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:43:13] Running /usr/bin/apptainer --version
[2025-10-13 05:43:13] apptainer version 1.4.1-1.1
[2025-10-13 05:43:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:43:13] magicA250
[2025-10-13 05:43:13] apptainer works
[2025-10-13 05:43:13] Set ATHENA_PROC_NUMBER=4
[2025-10-13 05:43:13] Set ATHENA_CORE_NUMBER=4
[2025-10-13 05:43:13] Starting ATLAS job with PandaID=6839988547
[2025-10-13 05:43:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:54:33]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:54:33] 2025-10-13 04:54:01,471 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:54:33] 2025-10-13 04:54:01,471 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:54:33] 2025-10-13 04:54:01,471 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:54:33] 2025-10-13 04:54:01,471 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:54:33] 2025-10-13 04:54:01,471 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:54:33] 2025-10-13 04:54:01,471 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:54:33] 2025-10-13 04:54:01,471 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:54:33] 2025-10-13 04:54:01,471 | INFO     | job 6839988547 has completed (purged errors)
[2025-10-13 06:54:33] 2025-10-13 04:54:01,471 | INFO     | overall cleanup function is called
[2025-10-13 06:54:33] 2025-10-13 04:54:02,478 | INFO     | --- collectZombieJob: --- 10, [3801219]
[2025-10-13 06:54:33] 2025-10-13 04:54:02,478 | INFO     | zombie collector waiting for pid 3801219
[2025-10-13 06:54:33] 2025-10-13 04:54:02,478 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:54:33] 2025-10-13 04:54:02,478 | INFO     | collected zombie processes
[2025-10-13 06:54:33] 2025-10-13 04:54:02,478 | INFO     | will attempt to kill all subprocesses of pid=3801219
[2025-10-13 06:54:33] 2025-10-13 04:54:02,523 | INFO     | process IDs to be killed: [3801219] (in reverse order)
[2025-10-13 06:54:33] 2025-10-13 04:54:02,558 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:54:33] 2025-10-13 04:54:02,559 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:54:33] 2025-10-13 04:54:02,560 | INFO     | did not find any defunct processes belonging to 3801219
[2025-10-13 06:54:33] 2025-10-13 04:54:02,562 | INFO     | did not find any defunct processes belonging to 3801219
[2025-10-13 06:54:33] 2025-10-13 04:54:02,562 | INFO     | ready for new job
[2025-10-13 06:54:33] 2025-10-13 04:54:02,562 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:54:33] 2025-10-13 04:54:02,563 | INFO     | ***************************************
[2025-10-13 06:54:33] 2025-10-13 04:54:02,563 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:54:33] 2025-10-13 04:54:02,563 | INFO     | ***************************************
[2025-10-13 06:54:33] 2025-10-13 04:54:02,563 | INFO     | 
[2025-10-13 06:54:33] 2025-10-13 04:54:02,563 | INFO     | architecture information:
[2025-10-13 06:54:33] 2025-10-13 04:54:02,563 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:54:33] 2025-10-13 04:54:02,577 | INFO     | cat /etc/os-release:
[2025-10-13 06:54:33] NAME="CentOS Linux"
[2025-10-13 06:54:33] VERSION="7 (Core)"
[2025-10-13 06:54:33] ID="centos"
[2025-10-13 06:54:33] ID_LIKE="rhel fedora"
[2025-10-13 06:54:33] VERSION_ID="7"
[2025-10-13 06:54:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:54:33] ANSI_COLOR="0;31"
[2025-10-13 06:54:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:54:33] HOME_URL="https://www.centos.org/"
[2025-10-13 06:54:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:54:33] 
[2025-10-13 06:54:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:54:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:54:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:54:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:54:33] 
[2025-10-13 06:54:33] 2025-10-13 04:54:02,577 | INFO     | ***************************************
[2025-10-13 06:54:33] 2025-10-13 04:54:03,080 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 06:54:33] 2025-10-13 04:54:03,099 | INFO     | sufficient remaining disk space (325666734080 B)
[2025-10-13 06:54:33] 2025-10-13 04:54:03,099 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:54:33] 2025-10-13 04:54:03,099 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:54:33] 2025-10-13 04:54:03,099 | INFO     | update_server=False
[2025-10-13 06:54:33] 2025-10-13 04:54:03,099 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:54:33] 2025-10-13 04:54:03,099 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:54:33] 2025-10-13 04:54:03,099 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:54:33] 2025-10-13 04:54:03,099 | INFO     | aborting loop
[2025-10-13 06:54:33] 2025-10-13 04:54:03,367 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:54:33] 2025-10-13 04:54:03,388 | INFO     | all data control threads have been joined
[2025-10-13 06:54:33] 2025-10-13 04:54:03,414 | INFO     | all job control threads have been joined
[2025-10-13 06:54:33] 2025-10-13 04:54:03,478 | INFO     | all payload control threads have been joined
[2025-10-13 06:54:33] 2025-10-13 04:54:04,105 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:54:33] 2025-10-13 04:54:04,105 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:54:33] 2025-10-13 04:54:04,394 | INFO     | [data] control thread has finished
[2025-10-13 06:54:33] 2025-10-13 04:54:04,419 | INFO     | [job] control thread has finished
[2025-10-13 06:54:33] 2025-10-13 04:54:04,468 | INFO     | [job] validate thread has finished
[2025-10-13 06:54:33] 2025-10-13 04:54:04,483 | INFO     | [payload] control thread has finished
[2025-10-13 06:54:33] 2025-10-13 04:54:04,494 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:54:33] 2025-10-13 04:54:04,539 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:54:33] 2025-10-13 04:54:04,668 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:54:33] 2025-10-13 04:54:04,758 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:54:33] 2025-10-13 04:54:05,002 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:54:33] 2025-10-13 04:54:05,373 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:54:33] 2025-10-13 04:54:05,573 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:54:33] 2025-10-13 04:54:06,005 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:54:33] 2025-10-13 04:54:07,010 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:54:33] 2025-10-13 04:54:07,106 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:54:33] 2025-10-13 04:54:14,141 | INFO     | job.realtimelogging is not enabled
[2025-10-13 06:54:33] 2025-10-13 04:54:15,147 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:54:33] 2025-10-13 04:54:25,784 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:54:33] 2025-10-13 04:54:27,362 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140300033492800)>', '<ExcThread(monitor, started 140298663491328)>']
[2025-10-13 06:54:33] 2025-10-13 04:54:32,387 | INFO     | all workflow threads have been joined
[2025-10-13 06:54:33] 2025-10-13 04:54:32,387 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:54:33] 2025-10-13 04:54:32,387 | INFO     | traces error code: 0
[2025-10-13 06:54:33] 2025-10-13 04:54:32,388 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:54:33] 2025-10-13 04:54:33,422 | INFO     | PID=3794654 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 06:54:33] 2025-10-13 04:54:33,422 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:54:33] 2025-10-13 04:54:33,422 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:54:33] 2025-10-13 04:54:33,422 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:54:33] 2025-10-13 04:54:33,422 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:54:33] 2025-10-13 04:54:33,422 | INFO     | [monitor] control thread has ended
[2025-10-13 06:54:33] 2025-10-13 04:54:33,498 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:54:33] 2025-10-13 04:54:33,502 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:54:33] 2025-10-13 04:54:33,506 [wrapper] pilotpid: 3794654
[2025-10-13 06:54:33] 2025-10-13 04:54:33,509 [wrapper] Pilot exit status: 0
[2025-10-13 06:54:33] 2025-10-13 04:54:33,521 [wrapper] pandaids: 6839988547
[2025-10-13 06:54:33] 2025-10-13 04:54:33,543 [wrapper] cleanup supervisor_pilot 3810824 3794655
[2025-10-13 06:54:33] 2025-10-13 04:54:33,547 [wrapper] Test setup, not cleaning
[2025-10-13 06:54:33] 2025-10-13 04:54:33,551 [wrapper] apfmon messages muted
[2025-10-13 06:54:33] 2025-10-13 04:54:33,555 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:54:33] 2025-10-13 04:54:33,558 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:54:33]  *** Error codes and diagnostics ***
[2025-10-13 06:54:33]     "exeErrorCode": 0,
[2025-10-13 06:54:33]     "exeErrorDiag": "",
[2025-10-13 06:54:33]     "pilotErrorCode": 0,
[2025-10-13 06:54:33]     "pilotErrorDiag": "",
[2025-10-13 06:54:33]  *** Listing of results directory ***
[2025-10-13 06:54:33] total 408148
[2025-10-13 06:54:33] -rw-r--r-- 1 boinc boinc    557409 Oct 12 14:35 pilot3.tar.gz
[2025-10-13 06:54:33] -rw-r--r-- 1 boinc boinc      5112 Oct 12 14:50 queuedata.json
[2025-10-13 06:54:33] -rwx------ 1 boinc boinc     36292 Oct 12 14:50 runpilot2-wrapper.sh
[2025-10-13 06:54:33] -rw-r--r-- 1 boinc boinc       100 Oct 13 05:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:54:33] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 05:43 run_atlas
[2025-10-13 06:54:33] -rw-r--r-- 1 boinc boinc       105 Oct 13 05:43 job.xml
[2025-10-13 06:54:33] -rw-r--r-- 2 boinc boinc 218621532 Oct 13 05:43 EVNT.46676267._003815.pool.root.1
[2025-10-13 06:54:33] drwxrwx--x 2 boinc boinc      4096 Oct 13 05:43 shared
[2025-10-13 06:54:33] -rw-r--r-- 2 boinc boinc    569682 Oct 13 05:43 input.tar.gz
[2025-10-13 06:54:33] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:43 start_atlas.sh
[2025-10-13 06:54:33] -rw-r--r-- 1 boinc boinc         0 Oct 13 05:43 boinc_setup_complete
[2025-10-13 06:54:33] -rw-r--r-- 1 boinc boinc      6378 Oct 13 05:43 init_data.xml
[2025-10-13 06:54:33] -rw-r--r-- 1 boinc boinc         0 Oct 13 05:43 boinc_lockfile
[2025-10-13 06:54:33] -rw-r--r-- 1 boinc boinc      2550 Oct 13 05:43 pandaJob.out
[2025-10-13 06:54:33] -rw------- 1 boinc boinc    974373 Oct 13 05:43 agis_schedconf.cvmfs.json
[2025-10-13 06:54:33] -rw------- 1 boinc boinc   1560580 Oct 13 05:43 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:54:33] drwx------ 5 boinc boinc      4096 Oct 13 05:43 pilot3
[2025-10-13 06:54:33] -rw------- 1 boinc boinc 193656633 Oct 13 06:53 HITS.46676269._078640.pool.root.1
[2025-10-13 06:54:33] -rw-r--r-- 1 boinc boinc       529 Oct 13 06:53 boinc_task_state.xml
[2025-10-13 06:54:33] -rw------- 1 boinc boinc        95 Oct 13 06:53 pilot_heartbeat.json
[2025-10-13 06:54:33] -rw------- 1 boinc boinc      1025 Oct 13 06:53 memory_monitor_summary.json
[2025-10-13 06:54:33] -rw------- 1 boinc boinc    257404 Oct 13 06:53 log.46676269._078640.job.log.tgz.1
[2025-10-13 06:54:33] -rw------- 1 boinc boinc      7775 Oct 13 06:54 heartbeat.json
[2025-10-13 06:54:33] -rw-r--r-- 1 boinc boinc        27 Oct 13 06:54 wrapper_checkpoint.txt
[2025-10-13 06:54:33] -rw-r--r-- 1 boinc boinc      8192 Oct 13 06:54 boinc_mmap_file
[2025-10-13 06:54:33] -rw------- 1 boinc boinc       747 Oct 13 06:54 pilotlog.txt
[2025-10-13 06:54:33] -rw------- 1 boinc boinc    630039 Oct 13 06:54 log.46676269._078640.job.log.1
[2025-10-13 06:54:33] -rw------- 1 boinc boinc       357 Oct 13 06:54 output.list
[2025-10-13 06:54:33] -rw-r--r-- 1 boinc boinc       620 Oct 13 06:54 runtime_log
[2025-10-13 06:54:33] -rw------- 1 boinc boinc    911360 Oct 13 06:54 result.tar.gz
[2025-10-13 06:54:33] -rw-r--r-- 1 boinc boinc      8792 Oct 13 06:54 runtime_log.err
[2025-10-13 06:54:33] -rw------- 1 boinc boinc       661 Oct 13 06:54 KTuMDmFiAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlsjNDm90RCan.diag
[2025-10-13 06:54:33] -rw-r--r-- 1 boinc boinc     11617 Oct 13 06:54 stderr.txt
[2025-10-13 06:54:33] HITS file was successfully produced:
[2025-10-13 06:54:33] -rw------- 1 boinc boinc 193656633 Oct 13 06:53 shared/HITS.pool.root.1
[2025-10-13 06:54:33]  *** Contents of shared directory: ***
[2025-10-13 06:54:33] total 404096
[2025-10-13 06:54:33] -rw-r--r-- 2 boinc boinc 218621532 Oct 13 05:43 ATLAS.root_0
[2025-10-13 06:54:33] -rw-r--r-- 2 boinc boinc    569682 Oct 13 05:43 input.tar.gz
[2025-10-13 06:54:33] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:43 start_atlas.sh
[2025-10-13 06:54:33] -rw------- 1 boinc boinc 193656633 Oct 13 06:53 HITS.pool.root.1
[2025-10-13 06:54:33] -rw------- 1 boinc boinc    911360 Oct 13 06:54 result.tar.gz
06:54:34 (3790867): run_atlas exited; CPU time 15940.574760
06:54:34 (3790867): called boinc_finish(0)

</stderr_txt>
]]>

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