Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:52:35 (1918): wrapper (7.7.26015): starting
13:52:35 (1918): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 13:52:35] Arguments: --nthreads 12
[2025-10-12 13:52:35] Threads: 12
[2025-10-12 13:52:35] Checking for CVMFS
[2025-10-12 13:52:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 13:52:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 13:52:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 13:52:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 13:52:36] 2.11.2.0 25590 123887 93828 151630 1 56 15222912 20275200 1 130560 2 77955729 99.991 3967672 22047 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 13:52:36] CVMFS is ok
[2025-10-12 13:52:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 13:52:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 13:52:36] Further information can be found at the LHC@home message board.
[2025-10-12 13:52:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 13:52:36] Checking for apptainer binary...
[2025-10-12 13:52:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 13:52:36] Running /usr/bin/apptainer --version
[2025-10-12 13:52:36] apptainer version 1.3.2-1.el7
[2025-10-12 13:52:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 13:52:37] c-205-24.aglt2.org
[2025-10-12 13:52:37] apptainer works
[2025-10-12 13:52:37] Set ATHENA_PROC_NUMBER=12
[2025-10-12 13:52:37] Set ATHENA_CORE_NUMBER=12
[2025-10-12 13:52:37] Starting ATLAS job with PandaID=6839927927
[2025-10-12 13:52:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 15:09:06]  *** The last 200 lines of the pilot log: ***
[2025-10-12 15:09:06]  mtime=0
[2025-10-12 15:09:06]  protocol_id=None
[2025-10-12 15:09:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 15:09:06]  replicas=None
[2025-10-12 15:09:06]  scope=mc23_13p6TeV
[2025-10-12 15:09:06]  status=None
[2025-10-12 15:09:06]  status_code=0
[2025-10-12 15:09:06]  storage_token=
[2025-10-12 15:09:06]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839927927/log.46676269._077466.job.log.tgz.1
[2025-10-12 15:09:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bb/94/log.46676269._077466.job.log.tgz.1
[2025-10-12 15:09:06]  workdir=None
[2025-10-12 15:09:06] ]
[2025-10-12 15:09:06] 2025-10-12 19:08:41,766 | INFO     | transferring file log.46676269._077466.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839927927/log.46676269._077466.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 15:09:06] 2025-10-12 19:08:41,766 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839927927/log.46676269._077466.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._077466.job
[2025-10-12 15:09:06] 2025-10-12 19:08:41,787 | INFO     | adding to output.list: log.46676269._077466.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bb/94/log.46676269._077466.job.log.tg
[2025-10-12 15:09:06] 2025-10-12 19:08:41,788 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 15:09:06] 2025-10-12 19:08:41,788 | INFO     | summary of transferred files:
[2025-10-12 15:09:06] 2025-10-12 19:08:41,789 | INFO     |  -- lfn=log.46676269._077466.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 15:09:06] 2025-10-12 19:08:41,789 | INFO     | stage-out finished correctly
[2025-10-12 15:09:06] 2025-10-12 19:08:41,873 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 15:09:06] 2025-10-12 19:08:42,576 | INFO     | time since job start (4550s) is within the limit (172800.0s)
[2025-10-12 15:09:06] 2025-10-12 19:08:43,826 | INFO     | job 6839927927 has state=finished
[2025-10-12 15:09:06] 2025-10-12 19:08:43,827 | INFO     | preparing for final server update for job 6839927927 in state='finished'
[2025-10-12 15:09:06] 2025-10-12 19:08:43,827 | INFO     | this job has now completed (state=finished)
[2025-10-12 15:09:06] 2025-10-12 19:08:43,828 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 15:09:06] 2025-10-12 19:08:43,828 | INFO     | log transfer has been attempted: DONE
[2025-10-12 15:09:06] 2025-10-12 19:08:43,828 | INFO     | job 6839927927 has finished - writing final server update
[2025-10-12 15:09:06] 2025-10-12 19:08:43,828 | INFO     | total number of processed events: 400 (read)
[2025-10-12 15:09:06] 2025-10-12 19:08:43,829 | INFO     | executing command: lscpu
[2025-10-12 15:09:06] 2025-10-12 19:08:43,854 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 15:09:06] 2025-10-12 19:08:44,582 | INFO     | time since job start (4552s) is within the limit (172800.0s)
[2025-10-12 15:09:06] 2025-10-12 19:08:46,587 | INFO     | time since job start (4554s) is within the limit (172800.0s)
[2025-10-12 15:09:06] 2025-10-12 19:08:46,964 | WARNING  | process 12100 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 15:09:06] 2025-10-12 19:08:46,964 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839927927/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 15:09:06] 2025-10-12 19:08:47,056 | INFO     | number of running child processes to parent process 12100: 1
[2025-10-12 15:09:06] 2025-10-12 19:08:47,057 | INFO     | maximum number of monitored processes: 6
[2025-10-12 15:09:06] 2025-10-12 19:08:48,592 | INFO     | time since job start (4556s) is within the limit (172800.0s)
[2025-10-12 15:09:06] 2025-10-12 19:08:48,604 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 15:09:06] 2025-10-12 19:08:48,608 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-12 15:09:06] 2025-10-12 19:08:48,610 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839927927/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 15:09:06] 2025-10-12 19:08:48,610 | INFO     | extracted standard info from prmon json
[2025-10-12 15:09:06] 2025-10-12 19:08:48,610 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 15:09:06] 2025-10-12 19:08:48,610 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 15:09:06] 2025-10-12 19:08:48,611 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 15:09:06] 2025-10-12 19:08:48,611 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 15:09:06] 2025-10-12 19:08:48,612 | INFO     | fitting pss+swap vs Time
[2025-10-12 15:09:06] 2025-10-12 19:08:48,612 | INFO     | sum of square deviations: 97479037.0
[2025-10-12 15:09:06] 2025-10-12 19:08:48,613 | INFO     | sum of deviations: -2054426685.9999998
[2025-10-12 15:09:06] 2025-10-12 19:08:48,613 | INFO     | mean x: 1760293949.5
[2025-10-12 15:09:06] 2025-10-12 19:08:48,613 | INFO     | mean y: 2693728.3529411764
[2025-10-12 15:09:06] 2025-10-12 19:08:48,613 | INFO     | -- intersect: 37101899633.07619
[2025-10-12 15:09:06] 2025-10-12 19:08:48,613 | INFO     | intersect: 37101899633.07619
[2025-10-12 15:09:06] 2025-10-12 19:08:48,613 | INFO     | chi2: 0.057580317755458015
[2025-10-12 15:09:06] 2025-10-12 19:08:48,614 | INFO     | -- intersect: 37101899633.07619
[2025-10-12 15:09:06] 2025-10-12 19:08:48,614 | INFO     | current memory leak: -21.08 B/s (using 68 data points, chi2=0.06)
[2025-10-12 15:09:06] 2025-10-12 19:08:48,614 | INFO     | could have reported an average CPU frequency of 2041 MHz (6 samples)
[2025-10-12 15:09:06] 2025-10-12 19:08:48,614 | INFO     | ..............................
[2025-10-12 15:09:06] 2025-10-12 19:08:48,614 | INFO     | . Timing measurements:
[2025-10-12 15:09:06] 2025-10-12 19:08:48,614 | INFO     | . get job = 0 s
[2025-10-12 15:09:06] 2025-10-12 19:08:48,614 | INFO     | . initial setup = 2 s
[2025-10-12 15:09:06] 2025-10-12 19:08:48,615 | INFO     | . payload setup = 7 s
[2025-10-12 15:09:06] 2025-10-12 19:08:48,615 | INFO     | . stage-in = 0 s
[2025-10-12 15:09:06] 2025-10-12 19:08:48,615 | INFO     | . payload execution = 4520 s
[2025-10-12 15:09:06] 2025-10-12 19:08:48,615 | INFO     | . stage-out = 0 s
[2025-10-12 15:09:06] 2025-10-12 19:08:48,615 | INFO     | . log creation = 0 s
[2025-10-12 15:09:06] 2025-10-12 19:08:48,615 | INFO     | ..............................
[2025-10-12 15:09:06] 2025-10-12 19:08:48,852 | INFO     | 
[2025-10-12 15:09:06] 2025-10-12 19:08:48,853 | INFO     | job summary report
[2025-10-12 15:09:06] 2025-10-12 19:08:48,856 | INFO     | --------------------------------------------------
[2025-10-12 15:09:06] 2025-10-12 19:08:48,856 | INFO     | PanDA job id: 6839927927
[2025-10-12 15:09:06] 2025-10-12 19:08:48,856 | INFO     | task id: 46676269
[2025-10-12 15:09:06] 2025-10-12 19:08:48,856 | INFO     | errors: (none)
[2025-10-12 15:09:06] 2025-10-12 19:08:48,856 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 15:09:06] 2025-10-12 19:08:48,857 | INFO     | pilot state: finished 
[2025-10-12 15:09:06] 2025-10-12 19:08:48,857 | INFO     | transexitcode: 0
[2025-10-12 15:09:06] 2025-10-12 19:08:48,857 | INFO     | exeerrorcode: 0
[2025-10-12 15:09:06] 2025-10-12 19:08:48,857 | INFO     | exeerrordiag: 
[2025-10-12 15:09:06] 2025-10-12 19:08:48,857 | INFO     | exitcode: 0
[2025-10-12 15:09:06] 2025-10-12 19:08:48,857 | INFO     | exitmsg: OK
[2025-10-12 15:09:06] 2025-10-12 19:08:48,858 | INFO     | cpuconsumptiontime: 47226 s
[2025-10-12 15:09:06] 2025-10-12 19:08:48,858 | INFO     | nevents: 400
[2025-10-12 15:09:06] 2025-10-12 19:08:48,858 | INFO     | neventsw: 0
[2025-10-12 15:09:06] 2025-10-12 19:08:48,858 | INFO     | pid: 12100
[2025-10-12 15:09:06] 2025-10-12 19:08:48,858 | INFO     | pgrp: 12100
[2025-10-12 15:09:06] 2025-10-12 19:08:48,858 | INFO     | corecount: 12
[2025-10-12 15:09:06] 2025-10-12 19:08:48,859 | INFO     | event service: False
[2025-10-12 15:09:06] 2025-10-12 19:08:48,859 | INFO     | sizes: {0: 2348635, 1: 2348834, 5: 2349096, 11: 2349152, 4531: 2375285, 4533: 2384467, 4540: 2384605}
[2025-10-12 15:09:06] 2025-10-12 19:08:48,859 | INFO     | --------------------------------------------------
[2025-10-12 15:09:06] 2025-10-12 19:08:48,859 | INFO     | 
[2025-10-12 15:09:06] 2025-10-12 19:08:48,859 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 15:09:06] 2025-10-12 19:08:48,882 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 15:09:06] 2025-10-12 19:08:48,882 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 15:09:06] 2025-10-12 19:08:48,882 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 15:09:06] 2025-10-12 19:08:48,882 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 15:09:06] 2025-10-12 19:08:48,883 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 15:09:06] 2025-10-12 19:08:48,883 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 15:09:06] 2025-10-12 19:08:48,883 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 15:09:06] 2025-10-12 19:08:48,883 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 15:09:06] 2025-10-12 19:08:48,883 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 15:09:06] 2025-10-12 19:08:48,883 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 15:09:06] 2025-10-12 19:08:48,884 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 15:09:06] 2025-10-12 19:08:48,884 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 15:09:06] 2025-10-12 19:08:48,884 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 15:09:06] 2025-10-12 19:08:48,884 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 15:09:06] 2025-10-12 19:08:48,884 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 15:09:06] 2025-10-12 19:08:48,885 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 15:09:06] 2025-10-12 19:08:48,885 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 15:09:06] 2025-10-12 19:08:48,885 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 15:09:06] 2025-10-12 19:08:48,885 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 15:09:06] 2025-10-12 19:08:48,885 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 15:09:06] 2025-10-12 19:08:48,885 | INFO     | job 6839927927 has completed (purged errors)
[2025-10-12 15:09:06] 2025-10-12 19:08:48,886 | INFO     | overall cleanup function is called
[2025-10-12 15:09:06] 2025-10-12 19:08:49,894 | INFO     | --- collectZombieJob: --- 10, [12100]
[2025-10-12 15:09:06] 2025-10-12 19:08:49,894 | INFO     | zombie collector waiting for pid 12100
[2025-10-12 15:09:06] 2025-10-12 19:08:49,894 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 15:09:06] 2025-10-12 19:08:49,895 | INFO     | collected zombie processes
[2025-10-12 15:09:06] 2025-10-12 19:08:49,895 | INFO     | will attempt to kill all subprocesses of pid=12100
[2025-10-12 15:09:06] 2025-10-12 19:08:49,987 | INFO     | process IDs to be killed: [12100] (in reverse order)
[2025-10-12 15:09:06] 2025-10-12 19:08:50,040 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 15:09:06] 2025-10-12 19:08:50,041 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 15:09:06] 2025-10-12 19:08:50,045 | INFO     | did not find any defunct processes belonging to 12100
[2025-10-12 15:09:06] 2025-10-12 19:08:50,048 | INFO     | did not find any defunct processes belonging to 12100
[2025-10-12 15:09:06] 2025-10-12 19:08:50,049 | INFO     | ready for new job
[2025-10-12 15:09:06] 2025-10-12 19:08:50,049 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 15:09:06] 2025-10-12 19:08:50,050 | INFO     | ***************************************
[2025-10-12 15:09:06] 2025-10-12 19:08:50,050 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 15:09:06] 2025-10-12 19:08:50,050 | INFO     | ***************************************
[2025-10-12 15:09:06] 2025-10-12 19:08:50,050 | INFO     | 
[2025-10-12 15:09:06] 2025-10-12 19:08:50,051 | INFO     | architecture information:
[2025-10-12 15:09:06] 2025-10-12 19:08:50,051 | INFO     | executing command: cat /etc/os-release
[2025-10-12 15:09:06] 2025-10-12 19:08:50,068 | INFO     | cat /etc/os-release:
[2025-10-12 15:09:06] NAME="CentOS Linux"
[2025-10-12 15:09:06] VERSION="7 (Core)"
[2025-10-12 15:09:06] ID="centos"
[2025-10-12 15:09:06] ID_LIKE="rhel fedora"
[2025-10-12 15:09:06] VERSION_ID="7"
[2025-10-12 15:09:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 15:09:06] ANSI_COLOR="0;31"
[2025-10-12 15:09:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 15:09:06] HOME_URL="https://www.centos.org/"
[2025-10-12 15:09:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 15:09:06] 
[2025-10-12 15:09:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 15:09:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 15:09:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 15:09:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 15:09:06] 
[2025-10-12 15:09:06] 2025-10-12 19:08:50,068 | INFO     | ***************************************
[2025-10-12 15:09:06] 2025-10-12 19:08:50,571 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 15:09:06] 2025-10-12 19:08:50,588 | INFO     | sufficient remaining disk space (29358030848 B)
[2025-10-12 15:09:06] 2025-10-12 19:08:50,589 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 15:09:06] 2025-10-12 19:08:50,589 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 15:09:06] 2025-10-12 19:08:50,589 | INFO     | update_server=False
[2025-10-12 15:09:06] 2025-10-12 19:08:50,589 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 15:09:06] 2025-10-12 19:08:50,589 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-12 15:09:06] 2025-10-12 19:08:50,590 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 15:09:06] 2025-10-12 19:08:50,590 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:09:06] 2025-10-12 19:08:50,590 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 15:09:06] 2025-10-12 19:08:50,591 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 15:09:06] 2025-10-12 19:08:50,591 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 15:09:06] 2025-10-12 19:08:50,591 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:09:06] 2025-10-12 19:08:50,592 | INFO     | aborting loop
[2025-10-12 15:09:06] 2025-10-12 19:08:50,851 | INFO     | all job control threads have been joined
[2025-10-12 15:09:06] 2025-10-12 19:08:51,205 | INFO     | all data control threads have been joined
[2025-10-12 15:09:06] 2025-10-12 19:08:51,301 | INFO     | all payload control threads have been joined
[2025-10-12 15:09:06] 2025-10-12 19:08:51,592 | INFO     | [job] queue monitor thread has finished
[2025-10-12 15:09:06] 2025-10-12 19:08:51,595 | INFO     | [job] retrieve thread has finished
[2025-10-12 15:09:06] 2025-10-12 19:08:51,597 | INFO     | [job] job monitor thread has finished
[2025-10-12 15:09:06] 2025-10-12 19:08:51,671 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 15:09:06] 2025-10-12 19:08:51,781 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 15:09:06] 2025-10-12 19:08:51,857 | INFO     | [job] control thread has finished
[2025-10-12 15:09:06] 2025-10-12 19:08:52,051 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 15:09:06] 2025-10-12 19:08:52,210 | INFO     | [data] control thread has finished
[2025-10-12 15:09:06] 2025-10-12 19:08:52,306 | INFO     | [payload] control thread has finished
[2025-10-12 15:09:06] 2025-10-12 19:08:52,367 | INFO     | [data] copytool_in thread has finished
[2025-10-12 15:09:06] 2025-10-12 19:08:52,461 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 15:09:06] 2025-10-12 19:08:52,474 | INFO     | [payload] validate_post thread has finished
[2025-10-12 15:09:06] 2025-10-12 19:08:52,597 | INFO     | [data] copytool_out thread has finished
[2025-10-12 15:09:06] 2025-10-12 19:08:52,985 | INFO     | [job] validate thread has finished
[2025-10-12 15:09:06] 2025-10-12 19:08:53,037 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 15:09:06] 2025-10-12 19:08:53,176 | INFO     | [payload] failed_post thread has finished
[2025-10-12 15:09:06] 2025-10-12 19:08:56,467 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 15:09:06] 2025-10-12 19:08:59,543 | INFO     | [monitor] cgroup control has ended
[2025-10-12 15:09:06] 2025-10-12 19:09:00,915 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140156209391424)>', '<ExcThread(monitor, started 140155612538624)>']
[2025-10-12 15:09:06] 2025-10-12 19:09:01,636 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 15:09:06] 2025-10-12 19:09:01,636 | INFO     | [monitor] control thread has ended
[2025-10-12 15:09:06] 2025-10-12 19:09:05,918 | INFO     | all workflow threads have been joined
[2025-10-12 15:09:06] 2025-10-12 19:09:05,919 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 15:09:06] 2025-10-12 19:09:05,919 | INFO     | traces error code: 0
[2025-10-12 15:09:06] 2025-10-12 19:09:05,919 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 15:09:06] 2025-10-12 19:09:05,999 [wrapper] ==== pilot stdout END ====
[2025-10-12 15:09:06] 2025-10-12 19:09:06,002 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 15:09:06] 2025-10-12 19:09:06,006 [wrapper] pilotpid: 5703
[2025-10-12 15:09:06] 2025-10-12 19:09:06,010 [wrapper] Pilot exit status: 0
[2025-10-12 15:09:06] 2025-10-12 19:09:06,025 [wrapper] pandaids: 6839927927
[2025-10-12 15:09:06] 2025-10-12 19:09:06,064 [wrapper] cleanup supervisor_pilot 12321 5704
[2025-10-12 15:09:06] 2025-10-12 19:09:06,068 [wrapper] Test setup, not cleaning
[2025-10-12 15:09:06] 2025-10-12 19:09:06,072 [wrapper] apfmon messages muted
[2025-10-12 15:09:06] 2025-10-12 19:09:06,076 [wrapper] ==== wrapper stdout END ====
[2025-10-12 15:09:06] 2025-10-12 19:09:06,080 [wrapper] ==== wrapper stderr END ====
[2025-10-12 15:09:06]  *** Error codes and diagnostics ***
[2025-10-12 15:09:06]     "exeErrorCode": 0,
[2025-10-12 15:09:06]     "exeErrorDiag": "",
[2025-10-12 15:09:06]     "pilotErrorCode": 0,
[2025-10-12 15:09:06]     "pilotErrorDiag": "",
[2025-10-12 15:09:06]  *** Listing of results directory ***
[2025-10-12 15:09:06] total 415584
[2025-10-12 15:09:06] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 07:54 pilot3.tar.gz
[2025-10-12 15:09:06] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 07:55 queuedata.json
[2025-10-12 15:09:06] -rwx------ 1 boincer umatlas     36292 Oct 12 07:56 runpilot2-wrapper.sh
[2025-10-12 15:09:06] -rw-r--r-- 1 boincer umatlas       100 Oct 12 13:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 15:09:06] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 13:52 run_atlas
[2025-10-12 15:09:06] -rw-r--r-- 1 boincer umatlas       105 Oct 12 13:52 job.xml
[2025-10-12 15:09:06] -rw-r--r-- 2 boincer umatlas 222646232 Oct 12 13:52 EVNT.46676267._003708.pool.root.1
[2025-10-12 15:09:06] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 13:52 start_atlas.sh
[2025-10-12 15:09:06] drwxrwx--x 2 boincer umatlas      4096 Oct 12 13:52 shared
[2025-10-12 15:09:06] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 13:52 input.tar.gz
[2025-10-12 15:09:06] -rw-r--r-- 1 boincer umatlas         0 Oct 12 13:52 boinc_lockfile
[2025-10-12 15:09:06] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 13:52 pandaJob.out
[2025-10-12 15:09:06] -rw------- 1 boincer umatlas    975528 Oct 12 13:52 agis_schedconf.cvmfs.json
[2025-10-12 15:09:06] -rw------- 1 boincer umatlas   1560580 Oct 12 13:52 agis_ddmendpoints.agis.ALL.json
[2025-10-12 15:09:06] drwx------ 5 boincer umatlas      4096 Oct 12 13:52 pilot3
[2025-10-12 15:09:06] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 15:00 init_data.xml
[2025-10-12 15:09:06] -rw------- 1 boincer umatlas        95 Oct 12 15:07 pilot_heartbeat.json
[2025-10-12 15:09:06] -rw------- 1 boincer umatlas 196921738 Oct 12 15:08 HITS.46676269._077466.pool.root.1
[2025-10-12 15:09:06] -rw-r--r-- 1 boincer umatlas       529 Oct 12 15:08 boinc_task_state.xml
[2025-10-12 15:09:06] -rw------- 1 boincer umatlas      1050 Oct 12 15:08 memory_monitor_summary.json
[2025-10-12 15:09:06] -rw------- 1 boincer umatlas    384066 Oct 12 15:08 log.46676269._077466.job.log.tgz.1
[2025-10-12 15:09:06] -rw------- 1 boincer umatlas      7850 Oct 12 15:08 heartbeat.json
[2025-10-12 15:09:06] -rw-r--r-- 1 boincer umatlas        27 Oct 12 15:08 wrapper_checkpoint.txt
[2025-10-12 15:09:06] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 15:08 boinc_mmap_file
[2025-10-12 15:09:06] -rw------- 1 boincer umatlas      4552 Oct 12 15:09 pilotlog.txt
[2025-10-12 15:09:06] -rw------- 1 boincer umatlas    659615 Oct 12 15:09 log.46676269._077466.job.log.1
[2025-10-12 15:09:06] -rw------- 1 boincer umatlas       357 Oct 12 15:09 output.list
[2025-10-12 15:09:06] -rw-r--r-- 1 boincer umatlas       620 Oct 12 15:09 runtime_log
[2025-10-12 15:09:06] -rw------- 1 boincer umatlas   1064960 Oct 12 15:09 result.tar.gz
[2025-10-12 15:09:06] -rw------- 1 boincer umatlas       659 Oct 12 15:09 udOMDm2r9R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3gjNDm30HU7n.diag
[2025-10-12 15:09:06] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 15:09 runtime_log.err
[2025-10-12 15:09:06] -rw-r--r-- 1 boincer umatlas     21597 Oct 12 15:09 stderr.txt
[2025-10-12 15:09:06] HITS file was successfully produced:
[2025-10-12 15:09:06] -rw------- 1 boincer umatlas 196921738 Oct 12 15:08 shared/HITS.pool.root.1
[2025-10-12 15:09:06]  *** Contents of shared directory: ***
[2025-10-12 15:09:06] total 411356
[2025-10-12 15:09:06] -rw-r--r-- 2 boincer umatlas 222646232 Oct 12 13:52 ATLAS.root_0
[2025-10-12 15:09:06] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 13:52 start_atlas.sh
[2025-10-12 15:09:06] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 13:52 input.tar.gz
[2025-10-12 15:09:06] -rw------- 1 boincer umatlas 196921738 Oct 12 15:08 HITS.pool.root.1
[2025-10-12 15:09:06] -rw------- 1 boincer umatlas   1064960 Oct 12 15:09 result.tar.gz
15:09:07 (1918): run_atlas exited; CPU time 47199.290583
15:09:07 (1918): called boinc_finish(0)

</stderr_txt>
]]>

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