Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
18:25:40 (2711298): wrapper (7.7.26015): starting
18:25:40 (2711298): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 18:25:40] Arguments: --nthreads 12
[2025-10-12 18:25:40] Threads: 12
[2025-10-12 18:25:40] Checking for CVMFS
[2025-10-12 18:25:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:25:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:25:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:25:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:25:40] 2.11.0.0 3299214 3419 85952 151631 2 188 5421697 6144000 14759 130560 0 67097946 100.000 124596 191 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 18:25:40] CVMFS is ok
[2025-10-12 18:25:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:25:40] Checking for apptainer binary...
[2025-10-12 18:25:40] apptainer is not installed, using version from CVMFS
[2025-10-12 18:25:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:25:41] radiat0r
[2025-10-12 18:25:41] apptainer works
[2025-10-12 18:25:41] Set ATHENA_PROC_NUMBER=12
[2025-10-12 18:25:41] Set ATHENA_CORE_NUMBER=12
[2025-10-12 18:25:41] Starting ATLAS job with PandaID=6839988003
[2025-10-12 18:25:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:16:06]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:16:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/96/82/log.46676269._078346.job.log.tgz.1
[2025-10-12 19:16:06]  workdir=None
[2025-10-12 19:16:06] ]
[2025-10-12 19:16:06] 2025-10-12 19:15:14,285 | INFO     | transferring file log.46676269._078346.job.log.tgz.1 from /var/lib/boinc/slots/18/PanDA_Pilot-6839988003/log.46676269._078346.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-12 19:16:06] 2025-10-12 19:15:14,285 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/18/PanDA_Pilot-6839988003/log.46676269._078346.job.log.tgz.1 /var/lib/boinc/slots/18/log.46676269._078346.j
[2025-10-12 19:16:06] 2025-10-12 19:15:14,310 | INFO     | adding to output.list: log.46676269._078346.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/96/82/log.46676269._078346.job.log.tg
[2025-10-12 19:16:06] 2025-10-12 19:15:14,311 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 19:16:06] 2025-10-12 19:15:14,311 | INFO     | summary of transferred files:
[2025-10-12 19:16:06] 2025-10-12 19:15:14,311 | INFO     |  -- lfn=log.46676269._078346.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 19:16:06] 2025-10-12 19:15:14,311 | INFO     | stage-out finished correctly
[2025-10-12 19:16:06] 2025-10-12 19:15:15,530 | INFO     | monitor loop #208: job 0:6839988003 is in state 'finished'
[2025-10-12 19:16:06] 2025-10-12 19:15:15,530 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:16:06] 2025-10-12 19:15:16,039 | INFO     | time since job start (2960s) is within the limit (172800.0s)
[2025-10-12 19:16:06] 2025-10-12 19:15:16,550 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 19:16:06] 2025-10-12 19:15:18,004 | INFO     | PID=2716013 has CPU usage=19.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 19:16:06] 2025-10-12 19:15:18,004 | INFO     | .. there are 17 such processes running
[2025-10-12 19:16:06] 2025-10-12 19:15:18,033 | INFO     | monitor loop #209: job 0:6839988003 is in state 'finished'
[2025-10-12 19:16:06] 2025-10-12 19:15:18,034 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:16:06] 2025-10-12 19:15:18,347 | INFO     | job 6839988003 has state=finished
[2025-10-12 19:16:06] 2025-10-12 19:15:18,347 | INFO     | preparing for final server update for job 6839988003 in state='finished'
[2025-10-12 19:16:06] 2025-10-12 19:15:18,347 | INFO     | this job has now completed (state=finished)
[2025-10-12 19:16:06] 2025-10-12 19:15:18,348 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 19:16:06] 2025-10-12 19:15:18,348 | INFO     | log transfer has been attempted: DONE
[2025-10-12 19:16:06] 2025-10-12 19:15:18,348 | INFO     | job 6839988003 has finished - writing final server update
[2025-10-12 19:16:06] 2025-10-12 19:15:18,348 | INFO     | total number of processed events: 400 (read)
[2025-10-12 19:16:06] 2025-10-12 19:15:18,349 | INFO     | executing command: lscpu
[2025-10-12 19:16:06] 2025-10-12 19:15:18,541 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 19:16:06] 2025-10-12 19:15:19,005 | INFO     | time since job start (2963s) is within the limit (172800.0s)
[2025-10-12 19:16:06] 2025-10-12 19:15:20,537 | INFO     | monitor loop #210: job 0:6839988003 is in state 'finished'
[2025-10-12 19:16:06] 2025-10-12 19:15:20,537 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:16:06] 2025-10-12 19:15:21,011 | INFO     | time since job start (2965s) is within the limit (172800.0s)
[2025-10-12 19:16:06] 2025-10-12 19:15:23,015 | INFO     | time since job start (2967s) is within the limit (172800.0s)
[2025-10-12 19:16:06] 2025-10-12 19:15:23,038 | INFO     | monitor loop #211: job 0:6839988003 is in state 'finished'
[2025-10-12 19:16:06] 2025-10-12 19:15:23,039 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:16:06] 2025-10-12 19:15:25,020 | INFO     | time since job start (2969s) is within the limit (172800.0s)
[2025-10-12 19:16:06] 2025-10-12 19:15:25,217 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 19:16:06] 2025-10-12 19:15:25,284 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2362.2189414062486
[2025-10-12 19:16:06] 2025-10-12 19:15:25,372 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6839988003/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 19:16:06] 2025-10-12 19:15:25,373 | INFO     | extracted standard info from prmon json
[2025-10-12 19:16:06] 2025-10-12 19:15:25,373 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 19:16:06] 2025-10-12 19:15:25,373 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:16:06] 2025-10-12 19:15:25,374 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:16:06] 2025-10-12 19:15:25,374 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:16:06] 2025-10-12 19:15:25,375 | INFO     | fitting pss+swap vs Time
[2025-10-12 19:16:06] 2025-10-12 19:15:25,376 | INFO     | sum of square deviations: 21358540.0
[2025-10-12 19:16:06] 2025-10-12 19:15:25,376 | INFO     | sum of deviations: 87432824.99999997
[2025-10-12 19:16:06] 2025-10-12 19:15:25,376 | INFO     | mean x: 1760295117.0
[2025-10-12 19:16:06] 2025-10-12 19:15:25,376 | INFO     | mean y: 2662806.7560975607
[2025-10-12 19:16:06] 2025-10-12 19:15:25,376 | INFO     | -- intersect: -7203240542.11585
[2025-10-12 19:16:06] 2025-10-12 19:15:25,376 | INFO     | intersect: -7203240542.11585
[2025-10-12 19:16:06] 2025-10-12 19:15:25,377 | INFO     | chi2: 0.0018340535220036566
[2025-10-12 19:16:06] 2025-10-12 19:15:25,377 | INFO     | -- intersect: -7203240542.11585
[2025-10-12 19:16:06] 2025-10-12 19:15:25,377 | INFO     | current memory leak: 4.09 B/s (using 41 data points, chi2=0.00)
[2025-10-12 19:16:06] 2025-10-12 19:15:25,377 | INFO     | could have reported an average CPU frequency of 2388 MHz (5 samples)
[2025-10-12 19:16:06] 2025-10-12 19:15:25,377 | INFO     | ..............................
[2025-10-12 19:16:06] 2025-10-12 19:15:25,377 | INFO     | . Timing measurements:
[2025-10-12 19:16:06] 2025-10-12 19:15:25,378 | INFO     | . get job = 0 s
[2025-10-12 19:16:06] 2025-10-12 19:15:25,378 | INFO     | . initial setup = 1 s
[2025-10-12 19:16:06] 2025-10-12 19:15:25,378 | INFO     | . payload setup = 9 s
[2025-10-12 19:16:06] 2025-10-12 19:15:25,378 | INFO     | . stage-in = 0 s
[2025-10-12 19:16:06] 2025-10-12 19:15:25,378 | INFO     | . payload execution = 2925 s
[2025-10-12 19:16:06] 2025-10-12 19:15:25,378 | INFO     | . stage-out = 0 s
[2025-10-12 19:16:06] 2025-10-12 19:15:25,378 | INFO     | . log creation = 0 s
[2025-10-12 19:16:06] 2025-10-12 19:15:25,378 | INFO     | ..............................
[2025-10-12 19:16:06] 2025-10-12 19:15:25,478 | INFO     | 
[2025-10-12 19:16:06] 2025-10-12 19:15:25,478 | INFO     | job summary report
[2025-10-12 19:16:06] 2025-10-12 19:15:25,478 | INFO     | --------------------------------------------------
[2025-10-12 19:16:06] 2025-10-12 19:15:25,478 | INFO     | PanDA job id: 6839988003
[2025-10-12 19:16:06] 2025-10-12 19:15:25,478 | INFO     | task id: 46676269
[2025-10-12 19:16:06] 2025-10-12 19:15:25,478 | INFO     | errors: (none)
[2025-10-12 19:16:06] 2025-10-12 19:15:25,478 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:16:06] 2025-10-12 19:15:25,479 | INFO     | pilot state: finished 
[2025-10-12 19:16:06] 2025-10-12 19:15:25,479 | INFO     | transexitcode: 0
[2025-10-12 19:16:06] 2025-10-12 19:15:25,479 | INFO     | exeerrorcode: 0
[2025-10-12 19:16:06] 2025-10-12 19:15:25,479 | INFO     | exeerrordiag: 
[2025-10-12 19:16:06] 2025-10-12 19:15:25,479 | INFO     | exitcode: 0
[2025-10-12 19:16:06] 2025-10-12 19:15:25,479 | INFO     | exitmsg: OK
[2025-10-12 19:16:06] 2025-10-12 19:15:25,479 | INFO     | cpuconsumptiontime: 30617 s
[2025-10-12 19:16:06] 2025-10-12 19:15:25,479 | INFO     | nevents: 400
[2025-10-12 19:16:06] 2025-10-12 19:15:25,479 | INFO     | neventsw: 0
[2025-10-12 19:16:06] 2025-10-12 19:15:25,479 | INFO     | pid: 2728362
[2025-10-12 19:16:06] 2025-10-12 19:15:25,479 | INFO     | pgrp: 2728362
[2025-10-12 19:16:06] 2025-10-12 19:15:25,479 | INFO     | corecount: 12
[2025-10-12 19:16:06] 2025-10-12 19:15:25,480 | INFO     | event service: False
[2025-10-12 19:16:06] 2025-10-12 19:15:25,480 | INFO     | sizes: {0: 2348858, 8: 2349120, 11: 2349148, 2939: 2374539, 2940: 2383539, 2942: 2383595, 2951: 2383949}
[2025-10-12 19:16:06] 2025-10-12 19:15:25,480 | INFO     | --------------------------------------------------
[2025-10-12 19:16:06] 2025-10-12 19:15:25,480 | INFO     | 
[2025-10-12 19:16:06] 2025-10-12 19:15:25,480 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-10-12 19:16:06] 2025-10-12 19:15:25,507 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:16:06] 2025-10-12 19:15:25,508 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:16:06] 2025-10-12 19:15:25,508 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:16:06] 2025-10-12 19:15:25,508 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:16:06] 2025-10-12 19:15:25,508 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:16:06] 2025-10-12 19:15:25,508 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:16:06] 2025-10-12 19:15:25,508 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:16:06] 2025-10-12 19:15:25,508 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:16:06] 2025-10-12 19:15:25,508 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:16:06] 2025-10-12 19:15:25,508 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:16:06] 2025-10-12 19:15:25,509 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:16:06] 2025-10-12 19:15:25,509 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:16:06] 2025-10-12 19:15:25,509 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:16:06] 2025-10-12 19:15:25,509 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:16:06] 2025-10-12 19:15:25,509 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:16:06] 2025-10-12 19:15:25,509 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:16:06] 2025-10-12 19:15:25,509 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:16:06] 2025-10-12 19:15:25,509 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:16:06] 2025-10-12 19:15:25,509 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:16:06] 2025-10-12 19:15:25,509 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:16:06] 2025-10-12 19:15:25,510 | INFO     | job 6839988003 has completed (purged errors)
[2025-10-12 19:16:06] 2025-10-12 19:15:25,510 | INFO     | overall cleanup function is called
[2025-10-12 19:16:06] 2025-10-12 19:15:26,518 | INFO     | --- collectZombieJob: --- 10, [2728362]
[2025-10-12 19:16:06] 2025-10-12 19:15:26,519 | INFO     | zombie collector waiting for pid 2728362
[2025-10-12 19:16:06] 2025-10-12 19:15:26,519 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:16:06] 2025-10-12 19:15:26,519 | INFO     | collected zombie processes
[2025-10-12 19:16:06] 2025-10-12 19:15:26,519 | INFO     | will attempt to kill all subprocesses of pid=2728362
[2025-10-12 19:16:06] 2025-10-12 19:15:27,338 | INFO     | process IDs to be killed: [2728362] (in reverse order)
[2025-10-12 19:16:06] 2025-10-12 19:15:27,612 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:16:06] 2025-10-12 19:15:27,613 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:16:06] 2025-10-12 19:15:27,641 | INFO     | did not find any defunct processes belonging to 2728362
[2025-10-12 19:16:06] 2025-10-12 19:15:27,668 | INFO     | did not find any defunct processes belonging to 2728362
[2025-10-12 19:16:06] 2025-10-12 19:15:27,668 | INFO     | ready for new job
[2025-10-12 19:16:06] 2025-10-12 19:15:27,668 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:16:06] 2025-10-12 19:15:27,670 | INFO     | ***************************************
[2025-10-12 19:16:06] 2025-10-12 19:15:27,670 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:16:06] 2025-10-12 19:15:27,670 | INFO     | ***************************************
[2025-10-12 19:16:06] 2025-10-12 19:15:27,670 | INFO     | 
[2025-10-12 19:16:06] 2025-10-12 19:15:27,709 | INFO     | architecture information:
[2025-10-12 19:16:06] 2025-10-12 19:15:27,709 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:16:06] 2025-10-12 19:15:27,734 | INFO     | cat /etc/os-release:
[2025-10-12 19:16:06] NAME="CentOS Linux"
[2025-10-12 19:16:06] VERSION="7 (Core)"
[2025-10-12 19:16:06] ID="centos"
[2025-10-12 19:16:06] ID_LIKE="rhel fedora"
[2025-10-12 19:16:06] VERSION_ID="7"
[2025-10-12 19:16:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:16:06] ANSI_COLOR="0;31"
[2025-10-12 19:16:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:16:06] HOME_URL="https://www.centos.org/"
[2025-10-12 19:16:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:16:06] 
[2025-10-12 19:16:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:16:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:16:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:16:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:16:06] 
[2025-10-12 19:16:06] 2025-10-12 19:15:27,734 | INFO     | ***************************************
[2025-10-12 19:16:06] 2025-10-12 19:15:28,237 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-10-12 19:16:06] 2025-10-12 19:15:28,266 | INFO     | sufficient remaining disk space (1724286763008 B)
[2025-10-12 19:16:06] 2025-10-12 19:15:28,271 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:16:06] 2025-10-12 19:15:28,274 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:16:06] 2025-10-12 19:15:28,274 | INFO     | update_server=False
[2025-10-12 19:16:06] 2025-10-12 19:15:28,274 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:16:06] 2025-10-12 19:15:28,275 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:16:06] 2025-10-12 19:15:28,456 | INFO     | all data control threads have been joined
[2025-10-12 19:16:06] 2025-10-12 19:15:28,857 | INFO     | all payload control threads have been joined
[2025-10-12 19:16:06] 2025-10-12 19:15:29,050 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:16:06] 2025-10-12 19:15:29,051 | INFO     | aborting loop
[2025-10-12 19:16:06] 2025-10-12 19:15:29,281 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:16:06] 2025-10-12 19:15:29,398 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:16:06] 2025-10-12 19:15:29,402 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:16:06] 2025-10-12 19:15:29,461 | INFO     | [data] control thread has finished
[2025-10-12 19:16:06] 2025-10-12 19:15:29,478 | INFO     | all job control threads have been joined
[2025-10-12 19:16:06] 2025-10-12 19:15:29,494 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:16:06] 2025-10-12 19:15:29,718 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:16:06] 2025-10-12 19:15:29,863 | INFO     | [payload] control thread has finished
[2025-10-12 19:16:06] 2025-10-12 19:15:29,942 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:16:06] 2025-10-12 19:15:30,054 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:16:06] 2025-10-12 19:15:30,278 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:16:06] 2025-10-12 19:15:30,478 | INFO     | [job] validate thread has finished
[2025-10-12 19:16:06] 2025-10-12 19:15:30,482 | INFO     | [job] control thread has finished
[2025-10-12 19:16:06] 2025-10-12 19:15:30,486 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:16:06] 2025-10-12 19:15:30,510 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:16:06] 2025-10-12 19:15:31,490 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:16:06] 2025-10-12 19:15:31,650 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:16:06] 2025-10-12 19:15:35,654 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:16:06] 2025-10-12 19:15:39,286 | INFO     | job.realtimelogging is not enabled
[2025-10-12 19:16:06] 2025-10-12 19:15:40,290 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:16:06] 2025-10-12 19:15:59,083 | INFO     | PID=2716013 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 19:16:06] 2025-10-12 19:15:59,083 | INFO     | .. there are 17 such processes running
[2025-10-12 19:16:06] 2025-10-12 19:15:59,084 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:16:06] 2025-10-12 19:15:59,084 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:16:06] 2025-10-12 19:15:59,084 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:16:06] 2025-10-12 19:16:00,362 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:16:06] 2025-10-12 19:16:01,366 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140129536538432)>', '<ExcThread(monitor, started 140128810956544)>']
[2025-10-12 19:16:06] 2025-10-12 19:16:02,098 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:16:06] 2025-10-12 19:16:02,099 | INFO     | [monitor] control thread has ended
[2025-10-12 19:16:06] 2025-10-12 19:16:06,390 | INFO     | all workflow threads have been joined
[2025-10-12 19:16:06] 2025-10-12 19:16:06,391 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:16:06] 2025-10-12 19:16:06,391 | INFO     | traces error code: 0
[2025-10-12 19:16:06] 2025-10-12 19:16:06,391 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:16:06] 2025-10-12 19:16:06,572 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:16:06] 2025-10-12 19:16:06,576 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:16:06] 2025-10-12 19:16:06,580 [wrapper] pilotpid: 2716013
[2025-10-12 19:16:06] 2025-10-12 19:16:06,585 [wrapper] Pilot exit status: 0
[2025-10-12 19:16:06] 2025-10-12 19:16:06,599 [wrapper] pandaids: 6839988003
[2025-10-12 19:16:06] 2025-10-12 19:16:06,795 [wrapper] cleanup supervisor_pilot 3103550 2716014
[2025-10-12 19:16:06] 2025-10-12 19:16:06,800 [wrapper] Test setup, not cleaning
[2025-10-12 19:16:06] 2025-10-12 19:16:06,804 [wrapper] apfmon messages muted
[2025-10-12 19:16:06] 2025-10-12 19:16:06,808 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:16:06] 2025-10-12 19:16:06,812 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:16:06]  *** Error codes and diagnostics ***
[2025-10-12 19:16:06]     "exeErrorCode": 0,
[2025-10-12 19:16:06]     "exeErrorDiag": "",
[2025-10-12 19:16:06]     "pilotErrorCode": 0,
[2025-10-12 19:16:06]     "pilotErrorDiag": "",
[2025-10-12 19:16:06]  *** Listing of results directory ***
[2025-10-12 19:16:06] total 410700
[2025-10-12 19:16:06] -rw-r--r-- 1 boinc boinc    557409 Oct 12 12:35 pilot3.tar.gz
[2025-10-12 19:16:06] -rwx------ 1 boinc boinc     36292 Oct 12 12:38 runpilot2-wrapper.sh
[2025-10-12 19:16:06] -rw-r--r-- 1 boinc boinc      5112 Oct 12 12:38 queuedata.json
[2025-10-12 19:16:06] -rw-r--r-- 1 boinc boinc       100 Oct 12 18:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:16:06] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 18:25 run_atlas
[2025-10-12 19:16:06] -rw-r--r-- 1 boinc boinc       105 Oct 12 18:25 job.xml
[2025-10-12 19:16:06] -rw-r--r-- 2 boinc boinc 219544045 Oct 12 18:25 EVNT.46676267._003796.pool.root.1
[2025-10-12 19:16:06] -rw-r--r-- 2 boinc boinc     15120 Oct 12 18:25 start_atlas.sh
[2025-10-12 19:16:06] drwxrwx--x 2 boinc boinc      4096 Oct 12 18:25 shared
[2025-10-12 19:16:06] -rw-r--r-- 2 boinc boinc    569675 Oct 12 18:25 input.tar.gz
[2025-10-12 19:16:06] -rw-r--r-- 1 boinc boinc      9396 Oct 12 18:25 init_data.xml
[2025-10-12 19:16:06] -rw-r--r-- 1 boinc boinc         0 Oct 12 18:25 boinc_setup_complete
[2025-10-12 19:16:06] -rw-r--r-- 1 boinc boinc         0 Oct 12 18:25 boinc_lockfile
[2025-10-12 19:16:06] -rw-r--r-- 1 boinc boinc      2550 Oct 12 18:25 pandaJob.out
[2025-10-12 19:16:06] -rw------- 1 boinc boinc    975528 Oct 12 18:25 agis_schedconf.cvmfs.json
[2025-10-12 19:16:06] -rw------- 1 boinc boinc   1560580 Oct 12 18:25 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:16:06] drwx------ 5 boinc boinc      4096 Oct 12 18:25 pilot3
[2025-10-12 19:16:06] -rw-r--r-- 1 boinc boinc       529 Oct 12 19:14 boinc_task_state.xml
[2025-10-12 19:16:06] -rw------- 1 boinc boinc 195481320 Oct 12 19:14 HITS.46676269._078346.pool.root.1
[2025-10-12 19:16:06] -rw------- 1 boinc boinc      1029 Oct 12 19:15 memory_monitor_summary.json
[2025-10-12 19:16:06] -rw------- 1 boinc boinc    367047 Oct 12 19:15 log.46676269._078346.job.log.tgz.1
[2025-10-12 19:16:06] -rw------- 1 boinc boinc      7739 Oct 12 19:15 heartbeat.json
[2025-10-12 19:16:06] -rw------- 1 boinc boinc        95 Oct 12 19:15 pilot_heartbeat.json
[2025-10-12 19:16:06] -rw-r--r-- 1 boinc boinc        27 Oct 12 19:16 wrapper_checkpoint.txt
[2025-10-12 19:16:06] -rw------- 1 boinc boinc      4899 Oct 12 19:16 pilotlog.txt
[2025-10-12 19:16:06] -rw-r--r-- 1 boinc boinc      8192 Oct 12 19:16 boinc_mmap_file
[2025-10-12 19:16:06] -rw------- 1 boinc boinc    444800 Oct 12 19:16 log.46676269._078346.job.log.1
[2025-10-12 19:16:06] -rw------- 1 boinc boinc       357 Oct 12 19:16 output.list
[2025-10-12 19:16:06] -rw-r--r-- 1 boinc boinc       620 Oct 12 19:16 runtime_log
[2025-10-12 19:16:06] -rw------- 1 boinc boinc    829440 Oct 12 19:16 result.tar.gz
[2025-10-12 19:16:06] -rw-r--r-- 1 boinc boinc      8672 Oct 12 19:16 runtime_log.err
[2025-10-12 19:16:06] -rw------- 1 boinc boinc       644 Oct 12 19:16 4JJNDm8VAS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmmtTMDmhtgXFm.diag
[2025-10-12 19:16:06] -rw-r--r-- 1 boinc boinc     22059 Oct 12 19:16 stderr.txt
[2025-10-12 19:16:06] HITS file was successfully produced:
[2025-10-12 19:16:06] -rw------- 1 boinc boinc 195481320 Oct 12 19:14 shared/HITS.pool.root.1
[2025-10-12 19:16:06]  *** Contents of shared directory: ***
[2025-10-12 19:16:06] total 406696
[2025-10-12 19:16:06] -rw-r--r-- 2 boinc boinc 219544045 Oct 12 18:25 ATLAS.root_0
[2025-10-12 19:16:06] -rw-r--r-- 2 boinc boinc     15120 Oct 12 18:25 start_atlas.sh
[2025-10-12 19:16:06] -rw-r--r-- 2 boinc boinc    569675 Oct 12 18:25 input.tar.gz
[2025-10-12 19:16:06] -rw------- 1 boinc boinc 195481320 Oct 12 19:14 HITS.pool.root.1
[2025-10-12 19:16:06] -rw------- 1 boinc boinc    829440 Oct 12 19:16 result.tar.gz
19:16:08 (2711298): run_atlas exited; CPU time 30795.662114
19:16:08 (2711298): called boinc_finish(0)

</stderr_txt>
]]>

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