Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-12 19:58:49 (16000): vboxwrapper version 26210
2025-10-12 19:58:49 (16000): BOINC client version: 8.0.4
2025-10-12 19:58:49 (16000): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-10-12 19:58:50 (16000): Successfully copied 'init_data.xml' to the shared directory.
2025-10-12 19:58:50 (16000): Create VM. (boinc_d50c1a20f784b955, slot#12)
2025-10-12 19:58:51 (16000): Setting Memory Size for VM. (4400MB)
2025-10-12 19:58:51 (16000): Setting CPU Count for VM. (4)
2025-10-12 19:58:51 (16000): Setting Chipset Options for VM.
2025-10-12 19:58:51 (16000): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-12 19:58:52 (16000): Setting Boot Options for VM.
2025-10-12 19:58:52 (16000): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-12 19:58:52 (16000): Enabling VM Network Access.
2025-10-12 19:58:53 (16000): Disabling USB Support for VM.
2025-10-12 19:58:53 (16000): Disabling COM Port Support for VM.
2025-10-12 19:58:53 (16000): Disabling LPT Port Support for VM.
2025-10-12 19:58:54 (16000): Disabling Audio Support for VM.
2025-10-12 19:58:54 (16000): Disabling Clipboard Support for VM.
2025-10-12 19:58:54 (16000): Disabling Drag and Drop Support for VM.
2025-10-12 19:58:55 (16000): Adding storage controller(s) to VM.
2025-10-12 19:58:55 (16000): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-12 19:58:56 (16000): Adding VirtualBox Guest Additions to VM.
2025-10-12 19:58:56 (16000): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-12 19:58:57 (16000): forwarding host port 58184 to guest port 80
2025-10-12 19:58:57 (16000): Enabling remote desktop for VM.
2025-10-12 19:58:57 (16000): Required extension pack not installed, remote desktop not enabled.
2025-10-12 19:58:57 (16000): Enabling shared directory for VM.
2025-10-12 19:58:58 (16000): Starting VM using VBoxManage interface. (boinc_d50c1a20f784b955, slot#12)
2025-10-12 19:59:03 (16000): Successfully started VM. (PID = '14712')
2025-10-12 19:59:03 (16000): Reporting VM Process ID to BOINC.
2025-10-12 19:59:03 (16000): Guest Log: BIOS: VirtualBox 7.0.6
2025-10-12 19:59:03 (16000): Guest Log: CPUID EDX: 0x178bfbff
2025-10-12 19:59:03 (16000): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-12 19:59:03 (16000): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-12 19:59:03 (16000): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-12 19:59:03 (16000): Detected: Web Application Enabled (http://localhost:58184)
2025-10-12 19:59:03 (16000): Preference change detected
2025-10-12 19:59:03 (16000): Setting CPU throttle for VM. (100%)
2025-10-12 19:59:03 (16000): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-12 19:59:05 (16000): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-12 19:59:05 (16000): Guest Log: BIOS: Booting from Hard Disk...
2025-10-12 19:59:07 (16000): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-12 19:59:07 (16000): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-12 19:59:07 (16000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-12 19:59:53 (16000): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-12 19:59:53 (16000): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-12 19:59:59 (16000): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-12 19:59:59 (16000): Guest Log: 00:00:00.000066 main     Log opened 2025-10-12T19:59:57.179805000Z
2025-10-12 19:59:59 (16000): Guest Log: 00:00:00.000120 main     OS Product: Linux
2025-10-12 19:59:59 (16000): Guest Log: 00:00:00.000136 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-12 19:59:59 (16000): Guest Log: 00:00:00.000163 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-12 19:59:59 (16000): Guest Log: 00:00:00.000192 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-12 19:59:59 (16000): Guest Log: 00:00:00.000192 main     Process ID: 1304
2025-10-12 19:59:59 (16000): Guest Log: 00:00:00.000193 main     Package type: LINUX_64BITS_GENERIC
2025-10-12 19:59:59 (16000): Guest Log: 00:00:00.000670 main     5.2.32 r132073 started. Verbose level = 0
2025-10-12 19:59:59 (16000): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-12 19:59:59 (16000): Guest Log: [INFO] Mounting shared directory
2025-10-12 19:59:59 (16000): Guest Log: [INFO] Checking for init_data.xml
2025-10-12 20:00:09 (16000): Guest Log: 00:00:10.012594 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 232 934 352 000ns (GuestNow=1 760 291 964 246 820 000 ns GuestLast=1 760 299 197 181 172 000 ns fSetTimeLastLoop=true )
2025-10-12 20:01:05 (16000): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-12 20:01:05 (16000): Guest Log: [INFO] Detected branch: prod
2025-10-12 20:01:05 (16000): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-12 20:01:05 (16000): Guest Log: Copying input files
2025-10-12 20:01:06 (16000): Guest Log: Copied input files into RunAtlas.
2025-10-12 20:01:06 (16000): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-12 20:01:06 (16000): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-12 20:01:06 (16000): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-12 20:01:06 (16000): Guest Log: Further information can be found at the LHC@home message board.
2025-10-12 20:01:51 (16000): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-12 20:01:51 (16000): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-12 20:01:51 (16000): Guest Log: 2.6.3.0 1616 1 31584 151630 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
2025-10-12 20:01:51 (16000): Guest Log: copied the webapp to /var/www
2025-10-12 20:01:51 (16000): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-12 20:01:51 (16000): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-12 20:01:51 (16000): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-12 20:01:51 (16000): Guest Log:  *** Starting ATLAS job. (PandaID=6840181669 taskID=46676269) ***
2025-10-12 21:44:24 (16000): Status Report: Elapsed Time: '6000.000000'
2025-10-12 21:44:24 (16000): Status Report: CPU Time: '15879.390625'
2025-10-12 23:28:47 (16000): Status Report: Elapsed Time: '12000.000000'
2025-10-12 23:28:47 (16000): Status Report: CPU Time: '34092.109375'
2025-10-13 00:21:14 (16000): Guest Log:  *** Job finished ***
2025-10-13 00:21:14 (16000): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:19:37,586 | INFO     | [data] queue_monitor thread has finished
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:19:51,979 [wrapper] supervise_pilot (15 min periods counter: 18)
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:20:26,802 | INFO     | [monitor] cgroup control has ended
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:20:27,239 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139685036431168)>', '<ExcThread(monitor, started 139684432811776)>']
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:20:28,125 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:20:28,125 | INFO     | [monitor] control thread has ended
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:20:32,245 | INFO     | all workflow threads have been joined
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:20:32,245 | INFO     | end of generic workflow (traces error code: 0)
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:20:32,245 | INFO     | traces error code: 0
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:20:32,246 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:20:32,385 [wrapper] ==== pilot stdout END ====
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:20:32,389 [wrapper] ==== wrapper stdout RESUME ====
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:20:32,393 [wrapper] pilotpid: 6040
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:20:32,397 [wrapper] Pilot exit status: 0
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:20:32,583 [wrapper] pandaids: 6840181669
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:20:32,619 [wrapper] cleanup supervisor_pilot 18023 6041
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:20:32,623 [wrapper] Test setup, not cleaning
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:20:32,626 [wrapper] apfmon messages muted
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:20:32,631 [wrapper] ==== wrapper stdout END ====
2025-10-13 00:21:14 (16000): Guest Log: 2025-10-12 22:20:32,634 [wrapper] ==== wrapper stderr END ====
2025-10-13 00:21:14 (16000): Guest Log:  *** Error codes and diagnostics ***
2025-10-13 00:21:14 (16000): Guest Log:     "exeErrorCode": 0,
2025-10-13 00:21:14 (16000): Guest Log:     "exeErrorDiag": "",
2025-10-13 00:21:14 (16000): Guest Log:     "pilotErrorCode": 0,
2025-10-13 00:21:14 (16000): Guest Log:     "pilotErrorDiag": "",
2025-10-13 00:21:14 (16000): Guest Log:  *** Listing of results directory ***
2025-10-13 00:21:14 (16000): Guest Log: total 192732
2025-10-13 00:21:14 (16000): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 12 13:55 pilot3.tar.gz
2025-10-13 00:21:14 (16000): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 12 14:18 queuedata.json
2025-10-13 00:21:14 (16000): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 12 14:19 runpilot2-wrapper.sh
2025-10-13 00:21:14 (16000): Guest Log: -rwxr-xr-x. 1 atlas atlas      9401 Oct 12 18:00 init_data.xml
2025-10-13 00:21:14 (16000): Guest Log: -rwxr-xr-x. 1 atlas atlas    569682 Oct 12 18:00 input.tar.gz
2025-10-13 00:21:14 (16000): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 12 18:00 start_atlas.sh
2025-10-13 00:21:14 (16000): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 18:00 EVNT.46676267._004227.pool.root.1 -> /data/./ATLAS.root_0
2025-10-13 00:21:14 (16000): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 12 18:01 pandaJob.out
2025-10-13 00:21:14 (16000): Guest Log: -rw-------. 1 atlas atlas    975528 Oct 12 18:04 agis_schedconf.cvmfs.json
2025-10-13 00:21:14 (16000): Guest Log: drwx------. 5 atlas atlas      4096 Oct 12 18:05 pilot3
2025-10-13 00:21:14 (16000): Guest Log: -rw-------. 1 atlas atlas 188708643 Oct 12 22:17 HITS.46676269._080544.pool.root.1
2025-10-13 00:21:14 (16000): Guest Log: -rw-------. 1 atlas atlas      1035 Oct 12 22:17 memory_monitor_summary.json
2025-10-13 00:21:14 (16000): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 22:17 agis_ddmendpoints.agis.ALL.json
2025-10-13 00:21:14 (16000): Guest Log: -rw-------. 1 atlas atlas    400505 Oct 12 22:17 log.46676269._080544.job.log.tgz.1
2025-10-13 00:21:14 (16000): Guest Log: -rw-------. 1 atlas atlas        95 Oct 12 22:19 pilot_heartbeat.json
2025-10-13 00:21:14 (16000): Guest Log: -rw-------. 1 atlas atlas      7831 Oct 12 22:19 heartbeat.json
2025-10-13 00:21:14 (16000): Guest Log: -rw-------. 1 atlas atlas      4612 Oct 12 22:20 pilotlog.txt
2025-10-13 00:21:14 (16000): Guest Log: -rw-------. 1 atlas atlas   2005428 Oct 12 22:20 log.46676269._080544.job.log.1
2025-10-13 00:21:14 (16000): Guest Log: -rw-------. 1 atlas atlas       357 Oct 12 22:20 output.list
2025-10-13 00:21:14 (16000): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 12 22:20 runtime_log
2025-10-13 00:21:14 (16000): Guest Log: -rw-------. 1 atlas atlas   2426880 Oct 12 22:20 result.tar.gz
2025-10-13 00:21:14 (16000): Guest Log: -rw-------. 1 atlas atlas       654 Oct 12 22:20 L72LDmI6BS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJDkNDm8zx77m.diag
2025-10-13 00:21:14 (16000): Guest Log: -rw-r--r--. 1 atlas atlas      8628 Oct 12 22:20 runtime_log.err
2025-10-13 00:21:14 (16000): Guest Log: Looking for outputfile HITS.46676269._080544.pool.root.1
2025-10-13 00:21:14 (16000): Guest Log: HITS file was successfully produced
2025-10-13 00:21:14 (16000): Guest Log: -rw-------. 1 atlas atlas 188708643 Oct 12 22:17 /home/atlas/RunAtlas/HITS.46676269._080544.pool.root.1
2025-10-13 00:21:15 (16000): Guest Log: Successfully finished the ATLAS job!
2025-10-13 00:21:15 (16000): Guest Log: Copying the results back to the shared directory!
2025-10-13 00:21:15 (16000): Guest Log:  *** Contents of shared directory: ***
2025-10-13 00:21:15 (16000): Guest Log: total 400808
2025-10-13 00:21:15 (16000): Guest Log: -rwxrwxrwx. 1 root root 218681952 Oct 12 17:58 ATLAS.root_0
2025-10-13 00:21:15 (16000): Guest Log: -rwxrwxrwx. 1 root root 188708643 Oct 12  2025 HITS.pool.root.1
2025-10-13 00:21:15 (16000): Guest Log: -rwxrwxrwx. 1 root root      9401 Oct 12 17:58 init_data.xml
2025-10-13 00:21:15 (16000): Guest Log: -rwxrwxrwx. 1 root root    569682 Oct 12 17:37 input.tar.gz
2025-10-13 00:21:15 (16000): Guest Log: -rwxrwxrwx. 1 root root   2426880 Oct 12  2025 result.tar.gz
2025-10-13 00:21:15 (16000): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 12 17:37 start_atlas.sh
2025-10-13 00:21:15 (16000): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-13 00:21:15 (16000): VM Completion File Detected.
2025-10-13 00:21:15 (16000): Powering off VM.
2025-10-13 00:21:16 (16000): Successfully stopped VM.
2025-10-13 00:21:16 (16000): Deregistering VM. (boinc_d50c1a20f784b955, slot#12)
2025-10-13 00:21:16 (16000): Removing network bandwidth throttle group from VM.
2025-10-13 00:21:16 (16000): Removing VM from VirtualBox.
2025-10-13 00:21:21 (16000): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN