Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:59:03 (3335069): wrapper (7.7.26015): starting
03:59:03 (3335069): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 03:59:03] Arguments: --nthreads 3
[2025-10-13 03:59:03] Threads: 3
[2025-10-13 03:59:03] Checking for CVMFS
[2025-10-13 03:59:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 03:59:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 03:59:03] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 03:59:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 03:59:03] 2.9.2.0 1859496 4796 84756 151643 1 57 29751591 36864001 0 130560 0 3872428 99.991 167724 806 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 03:59:03] CVMFS is ok
[2025-10-13 03:59:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 03:59:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 03:59:03] Further information can be found at the LHC@home message board.
[2025-10-13 03:59:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 03:59:03] Checking for apptainer binary...
[2025-10-13 03:59:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 03:59:03] Running /usr/bin/apptainer --version
[2025-10-13 03:59:03] apptainer version 1.4.1-1.1
[2025-10-13 03:59:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 03:59:03] atlasA228b
[2025-10-13 03:59:03] apptainer works
[2025-10-13 03:59:03] Set ATHENA_PROC_NUMBER=3
[2025-10-13 03:59:03] Set ATHENA_CORE_NUMBER=3
[2025-10-13 03:59:03] Starting ATLAS job with PandaID=6840081699
[2025-10-13 03:59:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:20:21]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | job 6840081699 has completed (purged errors)
[2025-10-13 05:20:21] 2025-10-13 03:19:39,093 | INFO     | overall cleanup function is called
[2025-10-13 05:20:21] 2025-10-13 03:19:40,100 | INFO     | --- collectZombieJob: --- 10, [3345232]
[2025-10-13 05:20:21] 2025-10-13 03:19:40,100 | INFO     | zombie collector waiting for pid 3345232
[2025-10-13 05:20:21] 2025-10-13 03:19:40,100 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:20:21] 2025-10-13 03:19:40,100 | INFO     | collected zombie processes
[2025-10-13 05:20:21] 2025-10-13 03:19:40,100 | INFO     | will attempt to kill all subprocesses of pid=3345232
[2025-10-13 05:20:21] 2025-10-13 03:19:40,145 | INFO     | process IDs to be killed: [3345232] (in reverse order)
[2025-10-13 05:20:21] 2025-10-13 03:19:40,171 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:20:21] 2025-10-13 03:19:40,171 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:20:21] 2025-10-13 03:19:40,173 | INFO     | did not find any defunct processes belonging to 3345232
[2025-10-13 05:20:21] 2025-10-13 03:19:40,174 | INFO     | did not find any defunct processes belonging to 3345232
[2025-10-13 05:20:21] 2025-10-13 03:19:40,174 | INFO     | ready for new job
[2025-10-13 05:20:21] 2025-10-13 03:19:40,174 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:20:21] 2025-10-13 03:19:40,175 | INFO     | ***************************************
[2025-10-13 05:20:21] 2025-10-13 03:19:40,175 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:20:21] 2025-10-13 03:19:40,175 | INFO     | ***************************************
[2025-10-13 05:20:21] 2025-10-13 03:19:40,175 | INFO     | 
[2025-10-13 05:20:21] 2025-10-13 03:19:40,175 | INFO     | architecture information:
[2025-10-13 05:20:21] 2025-10-13 03:19:40,175 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:20:21] 2025-10-13 03:19:40,184 | INFO     | cat /etc/os-release:
[2025-10-13 05:20:21] NAME="CentOS Linux"
[2025-10-13 05:20:21] VERSION="7 (Core)"
[2025-10-13 05:20:21] ID="centos"
[2025-10-13 05:20:21] ID_LIKE="rhel fedora"
[2025-10-13 05:20:21] VERSION_ID="7"
[2025-10-13 05:20:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:20:21] ANSI_COLOR="0;31"
[2025-10-13 05:20:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:20:21] HOME_URL="https://www.centos.org/"
[2025-10-13 05:20:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:20:21] 
[2025-10-13 05:20:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:20:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:20:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:20:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:20:21] 
[2025-10-13 05:20:21] 2025-10-13 03:19:40,185 | INFO     | ***************************************
[2025-10-13 05:20:21] 2025-10-13 03:19:40,688 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 05:20:21] 2025-10-13 03:19:40,702 | INFO     | sufficient remaining disk space (274587451392 B)
[2025-10-13 05:20:21] 2025-10-13 03:19:40,702 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:20:21] 2025-10-13 03:19:40,702 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:20:21] 2025-10-13 03:19:40,702 | INFO     | update_server=False
[2025-10-13 05:20:21] 2025-10-13 03:19:40,702 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:20:21] 2025-10-13 03:19:40,702 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:20:21] 2025-10-13 03:19:40,702 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:20:21] 2025-10-13 03:19:41,207 | INFO     | all data control threads have been joined
[2025-10-13 05:20:21] 2025-10-13 03:19:41,211 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:20:21] 2025-10-13 03:19:41,211 | INFO     | aborting loop
[2025-10-13 05:20:21] 2025-10-13 03:19:41,278 | INFO     | all payload control threads have been joined
[2025-10-13 05:20:21] 2025-10-13 03:19:41,408 | INFO     | all job control threads have been joined
[2025-10-13 05:20:21] 2025-10-13 03:19:41,653 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:20:21] 2025-10-13 03:19:41,703 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:20:21] 2025-10-13 03:19:41,707 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:20:21] 2025-10-13 03:19:41,707 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:20:21] 2025-10-13 03:19:41,916 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:20:21] 2025-10-13 03:19:42,211 | INFO     | [data] control thread has finished
[2025-10-13 05:20:21] 2025-10-13 03:19:42,216 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:20:21] 2025-10-13 03:19:42,283 | INFO     | [payload] control thread has finished
[2025-10-13 05:20:21] 2025-10-13 03:19:42,414 | INFO     | [job] control thread has finished
[2025-10-13 05:20:21] 2025-10-13 03:19:42,522 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:20:21] 2025-10-13 03:19:42,768 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:20:21] 2025-10-13 03:19:43,068 | INFO     | [job] validate thread has finished
[2025-10-13 05:20:21] 2025-10-13 03:19:43,142 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:20:21] 2025-10-13 03:19:43,153 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:20:21] 2025-10-13 03:19:43,660 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:20:21] 2025-10-13 03:19:44,710 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:20:21] 2025-10-13 03:19:51,233 | INFO     | job.realtimelogging is not enabled
[2025-10-13 05:20:21] 2025-10-13 03:19:52,239 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:20:21] 2025-10-13 03:20:11,533 | INFO     | PID=3338797 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:20:21] 2025-10-13 03:20:11,533 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:20:21] 2025-10-13 03:20:11,533 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:20:21] 2025-10-13 03:20:11,533 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:20:21] 2025-10-13 03:20:14,894 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:20:21] 2025-10-13 03:20:16,229 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140433478330176)>', '<ExcThread(monitor, started 140432604391168)>']
[2025-10-13 05:20:21] 2025-10-13 03:20:16,560 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:20:21] 2025-10-13 03:20:16,561 | INFO     | [monitor] control thread has ended
[2025-10-13 05:20:21] 2025-10-13 03:20:21,241 | INFO     | all workflow threads have been joined
[2025-10-13 05:20:21] 2025-10-13 03:20:21,241 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:20:21] 2025-10-13 03:20:21,241 | INFO     | traces error code: 0
[2025-10-13 05:20:21] 2025-10-13 03:20:21,241 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:20:21] 2025-10-13 03:20:21,292 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:20:21] 2025-10-13 03:20:21,295 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:20:21] 2025-10-13 03:20:21,297 [wrapper] pilotpid: 3338797
[2025-10-13 05:20:21] 2025-10-13 03:20:21,300 [wrapper] Pilot exit status: 0
[2025-10-13 05:20:21] 2025-10-13 03:20:21,308 [wrapper] pandaids: 6840081699
[2025-10-13 05:20:21] 2025-10-13 03:20:21,325 [wrapper] cleanup supervisor_pilot 3357065 3338798
[2025-10-13 05:20:21] 2025-10-13 03:20:21,328 [wrapper] Test setup, not cleaning
[2025-10-13 05:20:21] 2025-10-13 03:20:21,330 [wrapper] apfmon messages muted
[2025-10-13 05:20:21] 2025-10-13 03:20:21,333 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:20:21] 2025-10-13 03:20:21,335 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:20:21]  *** Error codes and diagnostics ***
[2025-10-13 05:20:21]     "exeErrorCode": 0,
[2025-10-13 05:20:21]     "exeErrorDiag": "",
[2025-10-13 05:20:21]     "pilotErrorCode": 0,
[2025-10-13 05:20:21]     "pilotErrorDiag": "",
[2025-10-13 05:20:21]  *** Listing of results directory ***
[2025-10-13 05:20:21] total 409596
[2025-10-13 05:20:21] -rw-r--r-- 1 boinc boinc    557409 Oct 12 15:45 pilot3.tar.gz
[2025-10-13 05:20:21] -rwx------ 1 boinc boinc     36292 Oct 12 15:47 runpilot2-wrapper.sh
[2025-10-13 05:20:21] -rw-r--r-- 1 boinc boinc      5112 Oct 12 15:47 queuedata.json
[2025-10-13 05:20:21] -rw-r--r-- 1 boinc boinc       100 Oct 13 03:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:20:21] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 03:59 run_atlas
[2025-10-13 05:20:21] -rw-r--r-- 1 boinc boinc       105 Oct 13 03:59 job.xml
[2025-10-13 05:20:21] -rw-r--r-- 2 boinc boinc 221104998 Oct 13 03:59 EVNT.46676267._004035.pool.root.1
[2025-10-13 05:20:21] -rw-r--r-- 2 boinc boinc    569681 Oct 13 03:59 input.tar.gz
[2025-10-13 05:20:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 03:59 start_atlas.sh
[2025-10-13 05:20:21] drwxrwx--x 2 boinc boinc      4096 Oct 13 03:59 shared
[2025-10-13 05:20:21] -rw-r--r-- 1 boinc boinc         0 Oct 13 03:59 boinc_setup_complete
[2025-10-13 05:20:21] -rw-r--r-- 1 boinc boinc      6449 Oct 13 03:59 init_data.xml
[2025-10-13 05:20:21] -rw-r--r-- 1 boinc boinc         0 Oct 13 03:59 boinc_lockfile
[2025-10-13 05:20:21] -rw-r--r-- 1 boinc boinc      2550 Oct 13 03:59 pandaJob.out
[2025-10-13 05:20:21] -rw------- 1 boinc boinc    975595 Oct 13 03:59 agis_schedconf.cvmfs.json
[2025-10-13 05:20:21] -rw------- 1 boinc boinc   1560580 Oct 13 03:59 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:20:21] drwx------ 5 boinc boinc      4096 Oct 13 03:59 pilot3
[2025-10-13 05:20:21] -rw-r--r-- 1 boinc boinc       529 Oct 13 05:19 boinc_task_state.xml
[2025-10-13 05:20:21] -rw------- 1 boinc boinc 192494354 Oct 13 05:19 HITS.46676269._079854.pool.root.1
[2025-10-13 05:20:21] -rw------- 1 boinc boinc      1016 Oct 13 05:19 memory_monitor_summary.json
[2025-10-13 05:20:21] -rw------- 1 boinc boinc        95 Oct 13 05:19 pilot_heartbeat.json
[2025-10-13 05:20:21] -rw------- 1 boinc boinc    255449 Oct 13 05:19 log.46676269._079854.job.log.tgz.1
[2025-10-13 05:20:21] -rw------- 1 boinc boinc      7758 Oct 13 05:19 heartbeat.json
[2025-10-13 05:20:21] -rw-r--r-- 1 boinc boinc        27 Oct 13 05:20 wrapper_checkpoint.txt
[2025-10-13 05:20:21] -rw-r--r-- 1 boinc boinc      8192 Oct 13 05:20 boinc_mmap_file
[2025-10-13 05:20:21] -rw------- 1 boinc boinc      4824 Oct 13 05:20 pilotlog.txt
[2025-10-13 05:20:21] -rw------- 1 boinc boinc    711055 Oct 13 05:20 log.46676269._079854.job.log.1
[2025-10-13 05:20:21] -rw------- 1 boinc boinc       357 Oct 13 05:20 output.list
[2025-10-13 05:20:21] -rw-r--r-- 1 boinc boinc       620 Oct 13 05:20 runtime_log
[2025-10-13 05:20:21] -rw------- 1 boinc boinc    983040 Oct 13 05:20 result.tar.gz
[2025-10-13 05:20:21] -rw-r--r-- 1 boinc boinc      8797 Oct 13 05:20 runtime_log.err
[2025-10-13 05:20:21] -rw------- 1 boinc boinc       662 Oct 13 05:20 NrTLDmgbBS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmx5jNDmJcmUpn.diag
[2025-10-13 05:20:21] -rw-r--r-- 1 boinc boinc     12740 Oct 13 05:20 stderr.txt
[2025-10-13 05:20:21] HITS file was successfully produced:
[2025-10-13 05:20:21] -rw------- 1 boinc boinc 192494354 Oct 13 05:19 shared/HITS.pool.root.1
[2025-10-13 05:20:21]  *** Contents of shared directory: ***
[2025-10-13 05:20:21] total 405452
[2025-10-13 05:20:21] -rw-r--r-- 2 boinc boinc 221104998 Oct 13 03:59 ATLAS.root_0
[2025-10-13 05:20:21] -rw-r--r-- 2 boinc boinc    569681 Oct 13 03:59 input.tar.gz
[2025-10-13 05:20:21] -rw-r--r-- 2 boinc boinc     15120 Oct 13 03:59 start_atlas.sh
[2025-10-13 05:20:21] -rw------- 1 boinc boinc 192494354 Oct 13 05:19 HITS.pool.root.1
[2025-10-13 05:20:21] -rw------- 1 boinc boinc    983040 Oct 13 05:20 result.tar.gz
05:20:23 (3335069): run_atlas exited; CPU time 13830.367019
05:20:23 (3335069): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN