Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
21:27:33 (32465): wrapper (7.7.26015): starting
21:27:33 (32465): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 21:27:33] Arguments: --nthreads 8
[2025-10-12 21:27:33] Threads: 8
[2025-10-12 21:27:33] Checking for CVMFS
[2025-10-12 21:27:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:27:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:27:33] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:27:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:27:33] 2.11.0.0 4239 905 57800 151635 2 188 1826925 4096001 4161 130560 0 836989 99.214 699479 1074 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-12 21:27:33] CVMFS is ok
[2025-10-12 21:27:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:27:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:27:33] Further information can be found at the LHC@home message board.
[2025-10-12 21:27:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:27:33] Checking for apptainer binary...
[2025-10-12 21:27:33] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-12 21:27:33] apptainer is not installed, using version from CVMFS
[2025-10-12 21:27:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:27:33] WARNING: Environment variable TMPDIR already has value [/tmp/job_10525106/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node047
[2025-10-12 21:27:33] apptainer works
[2025-10-12 21:27:33] Set ATHENA_PROC_NUMBER=8
[2025-10-12 21:27:33] Set ATHENA_CORE_NUMBER=8
[2025-10-12 21:27:33] Starting ATLAS job with PandaID=6839987812
[2025-10-12 21:27:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10525106/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:17:08]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:17:09]  scope=mc23_13p6TeV
[2025-10-12 22:17:09]  status=None
[2025-10-12 22:17:09]  status_code=0
[2025-10-12 22:17:09]  storage_token=
[2025-10-12 22:17:09]  surl=/tmp/job_10525106/atlas/pilot/slots/0/PanDA_Pilot-6839987812/log.46676269._078156.job.log.tgz.1
[2025-10-12 22:17:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/cc/log.46676269._078156.job.log.tgz.1
[2025-10-12 22:17:09]  workdir=None
[2025-10-12 22:17:09] ]
[2025-10-12 22:17:09] 2025-10-12 20:16:31,449 | INFO     | transferring file log.46676269._078156.job.log.tgz.1 from /tmp/job_10525106/atlas/pilot/slots/0/PanDA_Pilot-6839987812/log.46676269._078156.job.log.tgz.1 to /tmp/j
[2025-10-12 22:17:09] 2025-10-12 20:16:31,449 | INFO     | executing command: /usr/bin/env mv /tmp/job_10525106/atlas/pilot/slots/0/PanDA_Pilot-6839987812/log.46676269._078156.job.log.tgz.1 /tmp/job_10525106/atlas/pilot/sl
[2025-10-12 22:17:09] 2025-10-12 20:16:31,457 | INFO     | adding to output.list: log.46676269._078156.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/cc/log.46676269._078156.job.log.tg
[2025-10-12 22:17:09] 2025-10-12 20:16:31,457 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 22:17:09] 2025-10-12 20:16:31,457 | INFO     | summary of transferred files:
[2025-10-12 22:17:09] 2025-10-12 20:16:31,457 | INFO     |  -- lfn=log.46676269._078156.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 22:17:09] 2025-10-12 20:16:31,457 | INFO     | stage-out finished correctly
[2025-10-12 22:17:09] 2025-10-12 20:16:31,598 | INFO     | time since job start (2933s) is within the limit (172800.0s)
[2025-10-12 22:17:09] 2025-10-12 20:16:33,603 | INFO     | time since job start (2935s) is within the limit (172800.0s)
[2025-10-12 22:17:09] 2025-10-12 20:16:34,701 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 22:17:09] 2025-10-12 20:16:35,287 | INFO     | job 6839987812 has state=finished
[2025-10-12 22:17:09] 2025-10-12 20:16:35,287 | INFO     | preparing for final server update for job 6839987812 in state='finished'
[2025-10-12 22:17:09] 2025-10-12 20:16:35,287 | INFO     | this job has now completed (state=finished)
[2025-10-12 22:17:09] 2025-10-12 20:16:35,287 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 22:17:09] 2025-10-12 20:16:35,287 | INFO     | log transfer has been attempted: DONE
[2025-10-12 22:17:09] 2025-10-12 20:16:35,287 | INFO     | job 6839987812 has finished - writing final server update
[2025-10-12 22:17:09] 2025-10-12 20:16:35,288 | INFO     | total number of processed events: 400 (read)
[2025-10-12 22:17:09] 2025-10-12 20:16:35,288 | INFO     | executing command: lscpu
[2025-10-12 22:17:09] 2025-10-12 20:16:35,318 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 22:17:09] 2025-10-12 20:16:35,609 | INFO     | time since job start (2937s) is within the limit (172800.0s)
[2025-10-12 22:17:09] 2025-10-12 20:16:36,076 | WARNING  | process 13410 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 22:17:09] 2025-10-12 20:16:36,076 | INFO     | using path: /tmp/job_10525106/atlas/pilot/slots/0/PanDA_Pilot-6839987812/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:17:09] 2025-10-12 20:16:36,187 | INFO     | number of running child processes to parent process 13410: 1
[2025-10-12 22:17:09] 2025-10-12 20:16:36,187 | INFO     | maximum number of monitored processes: 6
[2025-10-12 22:17:09] 2025-10-12 20:16:36,707 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 22:17:09] 2025-10-12 20:16:36,712 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2755.1654062499993
[2025-10-12 22:17:09] 2025-10-12 20:16:36,730 | INFO     | using path: /tmp/job_10525106/atlas/pilot/slots/0/PanDA_Pilot-6839987812/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:17:09] 2025-10-12 20:16:36,730 | INFO     | extracted standard info from prmon json
[2025-10-12 22:17:09] 2025-10-12 20:16:36,730 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 22:17:09] 2025-10-12 20:16:36,730 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 22:17:09] 2025-10-12 20:16:36,730 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 22:17:09] 2025-10-12 20:16:36,730 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 22:17:09] 2025-10-12 20:16:36,731 | INFO     | fitting pss+swap vs Time
[2025-10-12 22:17:09] 2025-10-12 20:16:36,731 | INFO     | sum of square deviations: 21358540.0
[2025-10-12 22:17:09] 2025-10-12 20:16:36,731 | INFO     | sum of deviations: 110785333.00000001
[2025-10-12 22:17:09] 2025-10-12 20:16:36,731 | INFO     | mean x: 1760298800.0
[2025-10-12 22:17:09] 2025-10-12 20:16:36,731 | INFO     | mean y: 2569854.6829268294
[2025-10-12 22:17:09] 2025-10-12 20:16:36,731 | INFO     | -- intersect: -9127983485.456448
[2025-10-12 22:17:09] 2025-10-12 20:16:36,731 | INFO     | intersect: -9127983485.456448
[2025-10-12 22:17:09] 2025-10-12 20:16:36,731 | INFO     | chi2: 0.0012750207983514515
[2025-10-12 22:17:09] 2025-10-12 20:16:36,732 | INFO     | -- intersect: -9127983485.456448
[2025-10-12 22:17:09] 2025-10-12 20:16:36,732 | INFO     | current memory leak: 5.19 B/s (using 41 data points, chi2=0.00)
[2025-10-12 22:17:09] 2025-10-12 20:16:36,732 | INFO     | could have reported an average CPU frequency of 2656 MHz (5 samples)
[2025-10-12 22:17:09] 2025-10-12 20:16:36,732 | INFO     | ..............................
[2025-10-12 22:17:09] 2025-10-12 20:16:36,732 | INFO     | . Timing measurements:
[2025-10-12 22:17:09] 2025-10-12 20:16:36,732 | INFO     | . get job = 0 s
[2025-10-12 22:17:09] 2025-10-12 20:16:36,732 | INFO     | . initial setup = 1 s
[2025-10-12 22:17:09] 2025-10-12 20:16:36,732 | INFO     | . payload setup = 2 s
[2025-10-12 22:17:09] 2025-10-12 20:16:36,732 | INFO     | . stage-in = 0 s
[2025-10-12 22:17:09] 2025-10-12 20:16:36,732 | INFO     | . payload execution = 2914 s
[2025-10-12 22:17:09] 2025-10-12 20:16:36,732 | INFO     | . stage-out = 0 s
[2025-10-12 22:17:09] 2025-10-12 20:16:36,732 | INFO     | . log creation = 0 s
[2025-10-12 22:17:09] 2025-10-12 20:16:36,732 | INFO     | ..............................
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | 
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | job summary report
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | --------------------------------------------------
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | PanDA job id: 6839987812
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | task id: 46676269
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | errors: (none)
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | pilot state: finished 
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | transexitcode: 0
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | exeerrorcode: 0
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | exeerrordiag: 
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | exitcode: 0
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | exitmsg: OK
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | cpuconsumptiontime: 20100 s
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | nevents: 400
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | neventsw: 0
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | pid: 13410
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | pgrp: 13410
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | corecount: 8
[2025-10-12 22:17:09] 2025-10-12 20:16:36,782 | INFO     | event service: False
[2025-10-12 22:17:09] 2025-10-12 20:16:36,783 | INFO     | sizes: {0: 2348651, 1: 2348961, 2: 2349223, 11: 2349251, 2920: 2383772, 2924: 2383772, 2926: 2384126}
[2025-10-12 22:17:09] 2025-10-12 20:16:36,783 | INFO     | --------------------------------------------------
[2025-10-12 22:17:09] 2025-10-12 20:16:36,783 | INFO     | 
[2025-10-12 22:17:09] 2025-10-12 20:16:36,783 | INFO     | executing command: ls -lF /tmp/job_10525106/atlas/pilot/slots/0
[2025-10-12 22:17:09] 2025-10-12 20:16:36,790 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 22:17:09] 2025-10-12 20:16:36,790 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 22:17:09] 2025-10-12 20:16:36,790 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 22:17:09] 2025-10-12 20:16:36,791 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 22:17:09] 2025-10-12 20:16:36,791 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 22:17:09] 2025-10-12 20:16:36,791 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 22:17:09] 2025-10-12 20:16:36,791 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 22:17:09] 2025-10-12 20:16:36,791 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 22:17:09] 2025-10-12 20:16:36,791 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 22:17:09] 2025-10-12 20:16:36,791 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:17:09] 2025-10-12 20:16:36,791 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:17:09] 2025-10-12 20:16:36,791 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:17:09] 2025-10-12 20:16:36,791 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:17:09] 2025-10-12 20:16:36,791 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:17:09] 2025-10-12 20:16:36,791 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:17:09] 2025-10-12 20:16:36,791 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:17:09] 2025-10-12 20:16:36,791 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:17:09] 2025-10-12 20:16:36,791 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:17:09] 2025-10-12 20:16:36,791 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:17:09] 2025-10-12 20:16:36,791 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:17:09] 2025-10-12 20:16:36,791 | INFO     | job 6839987812 has completed (purged errors)
[2025-10-12 22:17:09] 2025-10-12 20:16:36,791 | INFO     | overall cleanup function is called
[2025-10-12 22:17:09] 2025-10-12 20:16:37,797 | INFO     | --- collectZombieJob: --- 10, [13410]
[2025-10-12 22:17:09] 2025-10-12 20:16:37,797 | INFO     | zombie collector waiting for pid 13410
[2025-10-12 22:17:09] 2025-10-12 20:16:37,797 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:17:09] 2025-10-12 20:16:37,797 | INFO     | collected zombie processes
[2025-10-12 22:17:09] 2025-10-12 20:16:37,797 | INFO     | will attempt to kill all subprocesses of pid=13410
[2025-10-12 22:17:09] 2025-10-12 20:16:37,903 | INFO     | process IDs to be killed: [13410] (in reverse order)
[2025-10-12 22:17:09] 2025-10-12 20:16:37,938 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:17:09] 2025-10-12 20:16:37,938 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:17:09] 2025-10-12 20:16:37,942 | INFO     | did not find any defunct processes belonging to 13410
[2025-10-12 22:17:09] 2025-10-12 20:16:37,945 | INFO     | did not find any defunct processes belonging to 13410
[2025-10-12 22:17:09] 2025-10-12 20:16:37,945 | INFO     | ready for new job
[2025-10-12 22:17:09] 2025-10-12 20:16:37,945 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:17:09] 2025-10-12 20:16:37,946 | INFO     | ***************************************
[2025-10-12 22:17:09] 2025-10-12 20:16:37,946 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:17:09] 2025-10-12 20:16:37,946 | INFO     | ***************************************
[2025-10-12 22:17:09] 2025-10-12 20:16:37,946 | INFO     | 
[2025-10-12 22:17:09] 2025-10-12 20:16:37,959 | INFO     | architecture information:
[2025-10-12 22:17:09] 2025-10-12 20:16:37,959 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:17:09] 2025-10-12 20:16:37,965 | INFO     | cat /etc/os-release:
[2025-10-12 22:17:09] NAME="CentOS Linux"
[2025-10-12 22:17:09] VERSION="7 (Core)"
[2025-10-12 22:17:09] ID="centos"
[2025-10-12 22:17:09] ID_LIKE="rhel fedora"
[2025-10-12 22:17:09] VERSION_ID="7"
[2025-10-12 22:17:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:17:09] ANSI_COLOR="0;31"
[2025-10-12 22:17:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:17:09] HOME_URL="https://www.centos.org/"
[2025-10-12 22:17:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:17:09] 
[2025-10-12 22:17:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:17:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:17:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:17:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:17:09] 
[2025-10-12 22:17:09] 2025-10-12 20:16:37,965 | INFO     | ***************************************
[2025-10-12 22:17:09] 2025-10-12 20:16:38,468 | INFO     | executing command: df -mP /tmp/job_10525106/atlas/pilot/slots/0
[2025-10-12 22:17:09] 2025-10-12 20:16:38,473 | INFO     | sufficient remaining disk space (227150921728 B)
[2025-10-12 22:17:09] 2025-10-12 20:16:38,473 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:17:09] 2025-10-12 20:16:38,473 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:17:09] 2025-10-12 20:16:38,473 | INFO     | update_server=False
[2025-10-12 22:17:09] 2025-10-12 20:16:38,473 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:17:09] 2025-10-12 20:16:38,473 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:17:09] 2025-10-12 20:16:38,525 | INFO     | all payload control threads have been joined
[2025-10-12 22:17:09] 2025-10-12 20:16:38,690 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 22:17:09] 2025-10-12 20:16:38,690 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 22:17:09] 2025-10-12 20:16:38,690 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:17:09] 2025-10-12 20:16:38,690 | INFO     | will abort loop
[2025-10-12 22:17:09] 2025-10-12 20:16:38,854 | INFO     | all job control threads have been joined
[2025-10-12 22:17:09] 2025-10-12 20:16:39,311 | INFO     | all data control threads have been joined
[2025-10-12 22:17:09] 2025-10-12 20:16:39,478 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:17:09] 2025-10-12 20:16:39,479 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:17:09] 2025-10-12 20:16:39,517 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:17:09] 2025-10-12 20:16:39,531 | INFO     | [payload] control thread has finished
[2025-10-12 22:17:09] 2025-10-12 20:16:39,674 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:17:09] 2025-10-12 20:16:39,695 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:17:09] 2025-10-12 20:16:39,848 | INFO     | [job] validate thread has finished
[2025-10-12 22:17:09] 2025-10-12 20:16:39,859 | INFO     | [job] control thread has finished
[2025-10-12 22:17:09] 2025-10-12 20:16:39,884 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:17:09] 2025-10-12 20:16:40,107 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:17:09] 2025-10-12 20:16:40,212 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:17:09] 2025-10-12 20:16:40,276 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:17:09] 2025-10-12 20:16:40,316 | INFO     | [data] control thread has finished
[2025-10-12 22:17:09] 2025-10-12 20:16:40,754 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:17:09] 2025-10-12 20:16:40,864 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:17:09] 2025-10-12 20:16:41,522 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:17:09] 2025-10-12 20:16:42,644 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:17:09] 2025-10-12 20:16:44,759 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:17:09] 2025-10-12 20:16:48,882 | INFO     | job.realtimelogging is not enabled
[2025-10-12 22:17:09] 2025-10-12 20:16:49,887 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:17:09] 2025-10-12 20:16:51,157 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060466944)>']
[2025-10-12 22:17:09] 2025-10-12 20:16:56,182 | INFO     | all workflow threads have been joined
[2025-10-12 22:17:09] 2025-10-12 20:16:56,182 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:17:09] 2025-10-12 20:16:56,182 | INFO     | traces error code: 0
[2025-10-12 22:17:09] 2025-10-12 20:16:56,182 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:17:09] 2025-10-12 20:17:08,804 | INFO     | PID=5008 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 22:17:09] 2025-10-12 20:17:08,804 | INFO     | .. there are 4 such processes running
[2025-10-12 22:17:09] 2025-10-12 20:17:08,804 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:17:09] 2025-10-12 20:17:08,804 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:17:09] 2025-10-12 20:17:08,804 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:17:09] 2025-10-12 20:17:08,804 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:17:09] 2025-10-12 20:17:08,804 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 22:17:09] 2025-10-12 20:17:08,804 | INFO     | [monitor] control thread has ended
[2025-10-12 22:17:09] 2025-10-12 20:17:08,857 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:17:09] 2025-10-12 20:17:08,858 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:17:09] 2025-10-12 20:17:08,860 [wrapper] pilotpid: 5008
[2025-10-12 22:17:09] 2025-10-12 20:17:08,861 [wrapper] Pilot exit status: 0
[2025-10-12 22:17:09] 2025-10-12 20:17:08,865 [wrapper] pandaids: 6839987812
[2025-10-12 22:17:09] 2025-10-12 20:17:08,891 [wrapper] cleanup supervisor_pilot 19472 5009
[2025-10-12 22:17:09] 2025-10-12 20:17:08,892 [wrapper] Test setup, not cleaning
[2025-10-12 22:17:09] 2025-10-12 20:17:08,893 [wrapper] apfmon messages muted
[2025-10-12 22:17:09] 2025-10-12 20:17:08,894 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:17:09] 2025-10-12 20:17:08,895 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:17:09]  *** Error codes and diagnostics ***
[2025-10-12 22:17:09]     "exeErrorCode": 0,
[2025-10-12 22:17:09]     "exeErrorDiag": "",
[2025-10-12 22:17:09]     "pilotErrorCode": 0,
[2025-10-12 22:17:09]     "pilotErrorDiag": "",
[2025-10-12 22:17:09]  *** Listing of results directory ***
[2025-10-12 22:17:09] total 414376
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user    557409 Oct 12 14:10 pilot3.tar.gz
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user      5112 Oct 12 14:29 queuedata.json
[2025-10-12 22:17:09] -rwx------ 1 mf493845 unix-user     36292 Oct 12 14:30 runpilot2-wrapper.sh
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user       100 Oct 12 20:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:17:09] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 12 20:30 run_atlas
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user       105 Oct 12 20:30 job.xml
[2025-10-12 22:17:09] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 21:27 start_atlas.sh
[2025-10-12 22:17:09] drwxrwx--x 2 mf493845 unix-user       100 Oct 12 21:27 shared
[2025-10-12 22:17:09] -rw-r--r-- 2 mf493845 unix-user    569684 Oct 12 21:27 input.tar.gz
[2025-10-12 22:17:09] -rw-r--r-- 2 mf493845 unix-user 223412876 Oct 12 21:27 EVNT.46676267._001662.pool.root.1
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user         0 Oct 12 21:27 boinc_setup_complete
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user      6392 Oct 12 21:27 init_data.xml
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user      8192 Oct 12 21:27 boinc_mmap_file
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user         0 Oct 12 21:27 boinc_lockfile
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user      2550 Oct 12 21:27 pandaJob.out
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user    975536 Oct 12 21:27 agis_schedconf.cvmfs.json
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user   1560580 Oct 12 21:27 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:17:09] drwx------ 5 mf493845 unix-user       440 Oct 12 21:27 pilot3
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user 195487229 Oct 12 22:16 HITS.46676269._078156.pool.root.1
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user        95 Oct 12 22:16 pilot_heartbeat.json
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user      1011 Oct 12 22:16 memory_monitor_summary.json
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user    307306 Oct 12 22:16 log.46676269._078156.job.log.tgz.1
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user      7762 Oct 12 22:16 heartbeat.json
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user       889 Oct 12 22:17 pilotlog.txt
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user    466813 Oct 12 22:17 log.46676269._078156.job.log.1
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user       357 Oct 12 22:17 output.list
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user       620 Oct 12 22:17 runtime_log
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user    788480 Oct 12 22:17 result.tar.gz
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user      9076 Oct 12 22:17 runtime_log.err
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user       641 Oct 12 22:17 R1KODmxOAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFmjNDmL0Teun.diag
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user     22337 Oct 12 22:17 stderr.txt
[2025-10-12 22:17:09] HITS file was successfully produced:
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user 195487229 Oct 12 22:16 shared/HITS.pool.root.1
[2025-10-12 22:17:09]  *** Contents of shared directory: ***
[2025-10-12 22:17:09] total 410436
[2025-10-12 22:17:09] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 21:27 start_atlas.sh
[2025-10-12 22:17:09] -rw-r--r-- 2 mf493845 unix-user    569684 Oct 12 21:27 input.tar.gz
[2025-10-12 22:17:09] -rw-r--r-- 2 mf493845 unix-user 223412876 Oct 12 21:27 ATLAS.root_0
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user 195487229 Oct 12 22:16 HITS.pool.root.1
[2025-10-12 22:17:09] -rw------- 1 mf493845 unix-user    788480 Oct 12 22:17 result.tar.gz
22:17:10 (32465): run_atlas exited; CPU time 20143.852586
22:17:10 (32465): called boinc_finish(0)

</stderr_txt>
]]>

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