Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:46:42 (1979044): wrapper (7.7.26015): starting
04:46:42 (1979044): wrapper: running run_atlas (--nthreads 2)
[2025-10-13 04:46:42] Arguments: --nthreads 2
[2025-10-13 04:46:42] Threads: 2
[2025-10-13 04:46:42] Checking for CVMFS
[2025-10-13 04:46:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 04:46:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 04:46:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 04:46:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 04:46:42] 2.9.2.0 779100 5238 61460 151645 3 56 19619938 36864001 0 130560 0 3174076 99.989 180520 794 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 04:46:42] CVMFS is ok
[2025-10-13 04:46:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 04:46:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 04:46:42] Further information can be found at the LHC@home message board.
[2025-10-13 04:46:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 04:46:42] Checking for apptainer binary...
[2025-10-13 04:46:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 04:46:42] Running /usr/bin/apptainer --version
[2025-10-13 04:46:42] apptainer version 1.4.1-1.1
[2025-10-13 04:46:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 04:46:42] atlasA229
[2025-10-13 04:46:42] apptainer works
[2025-10-13 04:46:42] Set ATHENA_PROC_NUMBER=2
[2025-10-13 04:46:42] Set ATHENA_CORE_NUMBER=2
[2025-10-13 04:46:42] Starting ATLAS job with PandaID=6840181278
[2025-10-13 04:46:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:46:11]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:46:11] 2025-10-13 04:45:20,348 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:46:11] 2025-10-13 04:45:20,348 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:46:11] 2025-10-13 04:45:20,348 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:46:11] 2025-10-13 04:45:20,348 | INFO     | job 6840181278 has completed (purged errors)
[2025-10-13 06:46:11] 2025-10-13 04:45:20,348 | INFO     | overall cleanup function is called
[2025-10-13 06:46:11] 2025-10-13 04:45:21,351 | INFO     | --- collectZombieJob: --- 10, [1989161]
[2025-10-13 06:46:11] 2025-10-13 04:45:21,352 | INFO     | zombie collector waiting for pid 1989161
[2025-10-13 06:46:11] 2025-10-13 04:45:21,352 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:46:11] 2025-10-13 04:45:21,352 | INFO     | collected zombie processes
[2025-10-13 06:46:11] 2025-10-13 04:45:21,352 | INFO     | will attempt to kill all subprocesses of pid=1989161
[2025-10-13 06:46:11] 2025-10-13 04:45:21,387 | INFO     | process IDs to be killed: [1989161] (in reverse order)
[2025-10-13 06:46:11] 2025-10-13 04:45:21,409 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:46:11] 2025-10-13 04:45:21,409 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:46:11] 2025-10-13 04:45:21,409 | INFO     | did not find any defunct processes belonging to 1989161
[2025-10-13 06:46:11] 2025-10-13 04:45:21,410 | INFO     | did not find any defunct processes belonging to 1989161
[2025-10-13 06:46:11] 2025-10-13 04:45:21,410 | INFO     | ready for new job
[2025-10-13 06:46:11] 2025-10-13 04:45:21,410 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:46:11] 2025-10-13 04:45:21,411 | INFO     | ***************************************
[2025-10-13 06:46:11] 2025-10-13 04:45:21,411 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:46:11] 2025-10-13 04:45:21,411 | INFO     | ***************************************
[2025-10-13 06:46:11] 2025-10-13 04:45:21,411 | INFO     | 
[2025-10-13 06:46:11] 2025-10-13 04:45:21,411 | INFO     | architecture information:
[2025-10-13 06:46:11] 2025-10-13 04:45:21,411 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:46:11] 2025-10-13 04:45:21,420 | INFO     | cat /etc/os-release:
[2025-10-13 06:46:11] NAME="CentOS Linux"
[2025-10-13 06:46:11] VERSION="7 (Core)"
[2025-10-13 06:46:11] ID="centos"
[2025-10-13 06:46:11] ID_LIKE="rhel fedora"
[2025-10-13 06:46:11] VERSION_ID="7"
[2025-10-13 06:46:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:46:11] ANSI_COLOR="0;31"
[2025-10-13 06:46:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:46:11] HOME_URL="https://www.centos.org/"
[2025-10-13 06:46:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:46:11] 
[2025-10-13 06:46:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:46:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:46:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:46:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:46:11] 
[2025-10-13 06:46:11] 2025-10-13 04:45:21,420 | INFO     | ***************************************
[2025-10-13 06:46:11] 2025-10-13 04:45:21,922 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 06:46:11] 2025-10-13 04:45:21,935 | INFO     | sufficient remaining disk space (341086044160 B)
[2025-10-13 06:46:11] 2025-10-13 04:45:21,935 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:46:11] 2025-10-13 04:45:21,935 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:46:11] 2025-10-13 04:45:21,935 | INFO     | update_server=False
[2025-10-13 06:46:11] 2025-10-13 04:45:21,935 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:46:11] 2025-10-13 04:45:21,935 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:46:11] 2025-10-13 04:45:21,935 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:46:11] 2025-10-13 04:45:21,935 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 06:46:11] 2025-10-13 04:45:21,935 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:46:11] 2025-10-13 04:45:21,935 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:46:11] 2025-10-13 04:45:21,935 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:46:11] 2025-10-13 04:45:21,936 | INFO     | aborting loop
[2025-10-13 06:46:11] 2025-10-13 04:45:21,936 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:46:11] 2025-10-13 04:45:21,936 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:46:11] 2025-10-13 04:45:22,858 | INFO     | all job control threads have been joined
[2025-10-13 06:46:11] 2025-10-13 04:45:22,909 | INFO     | all data control threads have been joined
[2025-10-13 06:46:11] 2025-10-13 04:45:22,940 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:46:11] 2025-10-13 04:45:22,941 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:46:11] 2025-10-13 04:45:22,942 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:46:11] 2025-10-13 04:45:23,130 | INFO     | all payload control threads have been joined
[2025-10-13 06:46:11] 2025-10-13 04:45:23,369 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:46:11] 2025-10-13 04:45:23,383 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:46:11] 2025-10-13 04:45:23,422 | INFO     | [job] validate thread has finished
[2025-10-13 06:46:11] 2025-10-13 04:45:23,621 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:46:11] 2025-10-13 04:45:23,858 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:46:11] 2025-10-13 04:45:23,864 | INFO     | [job] control thread has finished
[2025-10-13 06:46:11] 2025-10-13 04:45:23,915 | INFO     | [data] control thread has finished
[2025-10-13 06:46:11] 2025-10-13 04:45:23,916 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:46:11] 2025-10-13 04:45:23,941 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:46:11] 2025-10-13 04:45:24,136 | INFO     | [payload] control thread has finished
[2025-10-13 06:46:11] 2025-10-13 04:45:24,232 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:46:11] 2025-10-13 04:45:25,943 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:46:11] 2025-10-13 04:45:32,707 | INFO     | job.realtimelogging is not enabled
[2025-10-13 06:46:11] 2025-10-13 04:45:33,713 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:46:11] 2025-10-13 04:46:05,913 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:46:11] 2025-10-13 04:46:06,572 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140511630677824)>', '<ExcThread(monitor, started 140511350327040)>']
[2025-10-13 06:46:11] 2025-10-13 04:46:07,175 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:46:11] 2025-10-13 04:46:07,176 | INFO     | [monitor] control thread has ended
[2025-10-13 06:46:11] 2025-10-13 04:46:11,598 | INFO     | all workflow threads have been joined
[2025-10-13 06:46:11] 2025-10-13 04:46:11,599 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:46:11] 2025-10-13 04:46:11,599 | INFO     | traces error code: 0
[2025-10-13 06:46:11] 2025-10-13 04:46:11,600 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:46:11] 2025-10-13 04:46:11,643 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:46:11] 2025-10-13 04:46:11,646 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:46:11] 2025-10-13 04:46:11,649 [wrapper] pilotpid: 1982750
[2025-10-13 06:46:11] 2025-10-13 04:46:11,651 [wrapper] Pilot exit status: 0
[2025-10-13 06:46:11] 2025-10-13 04:46:11,657 [wrapper] pandaids: 6840181278
[2025-10-13 06:46:11] 2025-10-13 04:46:11,671 [wrapper] cleanup supervisor_pilot 2003493 1982751
[2025-10-13 06:46:11] 2025-10-13 04:46:11,673 [wrapper] Test setup, not cleaning
[2025-10-13 06:46:11] 2025-10-13 04:46:11,675 [wrapper] apfmon messages muted
[2025-10-13 06:46:11] 2025-10-13 04:46:11,677 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:46:11] 2025-10-13 04:46:11,679 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:46:11]  *** Error codes and diagnostics ***
[2025-10-13 06:46:11]     "exeErrorCode": 0,
[2025-10-13 06:46:11]     "exeErrorDiag": "",
[2025-10-13 06:46:11]     "pilotErrorCode": 0,
[2025-10-13 06:46:11]     "pilotErrorDiag": "",
[2025-10-13 06:46:11]  *** Listing of results directory ***
[2025-10-13 06:46:11] total 411204
[2025-10-13 06:46:11] -rw-r--r-- 1 boinc boinc    557409 Oct 12 15:55 pilot3.tar.gz
[2025-10-13 06:46:11] -rw-r--r-- 1 boinc boinc      5112 Oct 12 16:03 queuedata.json
[2025-10-13 06:46:11] -rwx------ 1 boinc boinc     36292 Oct 12 16:03 runpilot2-wrapper.sh
[2025-10-13 06:46:11] -rw-r--r-- 1 boinc boinc       100 Oct 13 04:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:46:11] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 04:46 run_atlas
[2025-10-13 06:46:11] -rw-r--r-- 1 boinc boinc       105 Oct 13 04:46 job.xml
[2025-10-13 06:46:11] -rw-r--r-- 2 boinc boinc 220006254 Oct 13 04:46 EVNT.46676267._001835.pool.root.1
[2025-10-13 06:46:11] -rw-r--r-- 2 boinc boinc    569689 Oct 13 04:46 input.tar.gz
[2025-10-13 06:46:11] -rw-r--r-- 2 boinc boinc     15120 Oct 13 04:46 start_atlas.sh
[2025-10-13 06:46:11] drwxrwx--x 2 boinc boinc      4096 Oct 13 04:46 shared
[2025-10-13 06:46:11] -rw-r--r-- 1 boinc boinc         0 Oct 13 04:46 boinc_setup_complete
[2025-10-13 06:46:11] -rw-r--r-- 1 boinc boinc      6206 Oct 13 04:46 init_data.xml
[2025-10-13 06:46:11] -rw-r--r-- 1 boinc boinc         0 Oct 13 04:46 boinc_lockfile
[2025-10-13 06:46:11] -rw-r--r-- 1 boinc boinc      2550 Oct 13 04:46 pandaJob.out
[2025-10-13 06:46:11] -rw------- 1 boinc boinc    974373 Oct 13 04:46 agis_schedconf.cvmfs.json
[2025-10-13 06:46:11] -rw------- 1 boinc boinc   1560580 Oct 13 04:46 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:46:11] drwx------ 5 boinc boinc      4096 Oct 13 04:46 pilot3
[2025-10-13 06:46:11] -rw------- 1 boinc boinc        95 Oct 13 06:44 pilot_heartbeat.json
[2025-10-13 06:46:11] -rw------- 1 boinc boinc 194572988 Oct 13 06:44 HITS.46676269._080237.pool.root.1
[2025-10-13 06:46:11] -rw-r--r-- 1 boinc boinc       529 Oct 13 06:44 boinc_task_state.xml
[2025-10-13 06:46:11] -rw------- 1 boinc boinc      1029 Oct 13 06:45 memory_monitor_summary.json
[2025-10-13 06:46:11] -rw------- 1 boinc boinc    276056 Oct 13 06:45 log.46676269._080237.job.log.tgz.1
[2025-10-13 06:46:11] -rw------- 1 boinc boinc      7763 Oct 13 06:45 heartbeat.json
[2025-10-13 06:46:11] -rw-r--r-- 1 boinc boinc      8192 Oct 13 06:46 boinc_mmap_file
[2025-10-13 06:46:11] -rw-r--r-- 1 boinc boinc        27 Oct 13 06:46 wrapper_checkpoint.txt
[2025-10-13 06:46:11] -rw------- 1 boinc boinc      4628 Oct 13 06:46 pilotlog.txt
[2025-10-13 06:46:11] -rw------- 1 boinc boinc   1023382 Oct 13 06:46 log.46676269._080237.job.log.1
[2025-10-13 06:46:11] -rw------- 1 boinc boinc       357 Oct 13 06:46 output.list
[2025-10-13 06:46:11] -rw-r--r-- 1 boinc boinc       620 Oct 13 06:46 runtime_log
[2025-10-13 06:46:11] -rw------- 1 boinc boinc   1320960 Oct 13 06:46 result.tar.gz
[2025-10-13 06:46:11] -rw-r--r-- 1 boinc boinc      8792 Oct 13 06:46 runtime_log.err
[2025-10-13 06:46:11] -rw------- 1 boinc boinc       662 Oct 13 06:46 RRGLDmhqBS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmBAkNDmxMWHhn.diag
[2025-10-13 06:46:11] -rw-r--r-- 1 boinc boinc     11128 Oct 13 06:46 stderr.txt
[2025-10-13 06:46:11] HITS file was successfully produced:
[2025-10-13 06:46:11] -rw------- 1 boinc boinc 194572988 Oct 13 06:44 shared/HITS.pool.root.1
[2025-10-13 06:46:11]  *** Contents of shared directory: ***
[2025-10-13 06:46:11] total 406744
[2025-10-13 06:46:11] -rw-r--r-- 2 boinc boinc 220006254 Oct 13 04:46 ATLAS.root_0
[2025-10-13 06:46:11] -rw-r--r-- 2 boinc boinc    569689 Oct 13 04:46 input.tar.gz
[2025-10-13 06:46:11] -rw-r--r-- 2 boinc boinc     15120 Oct 13 04:46 start_atlas.sh
[2025-10-13 06:46:11] -rw------- 1 boinc boinc 194572988 Oct 13 06:44 HITS.pool.root.1
[2025-10-13 06:46:11] -rw------- 1 boinc boinc   1320960 Oct 13 06:46 result.tar.gz
06:46:12 (1979044): run_atlas exited; CPU time 13755.263821
06:46:12 (1979044): called boinc_finish(0)

</stderr_txt>
]]>

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