Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:03:19 (3662222): wrapper (7.7.26015): starting
05:03:19 (3662222): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 05:03:19] Arguments: --nthreads 4
[2025-10-13 05:03:19] Threads: 4
[2025-10-13 05:03:19] Checking for CVMFS
[2025-10-13 05:03:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:03:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:03:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:03:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:03:19] 2.9.2.0 1879657 5105 98856 151645 3 57 26790969 36864000 0 130560 0 4648542 99.992 176211 780 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 05:03:19] CVMFS is ok
[2025-10-13 05:03:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 05:03:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 05:03:19] Further information can be found at the LHC@home message board.
[2025-10-13 05:03:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:03:19] Checking for apptainer binary...
[2025-10-13 05:03:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:03:19] Running /usr/bin/apptainer --version
[2025-10-13 05:03:19] apptainer version 1.4.1-1.1
[2025-10-13 05:03:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:03:20] iaxoA393
[2025-10-13 05:03:20] apptainer works
[2025-10-13 05:03:20] Set ATHENA_PROC_NUMBER=4
[2025-10-13 05:03:20] Set ATHENA_CORE_NUMBER=4
[2025-10-13 05:03:20] Starting ATLAS job with PandaID=6839991153
[2025-10-13 05:03:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:13:38]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:13:38] 2025-10-13 04:12:58,996 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 06:13:38] 2025-10-13 04:12:58,996 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 06:13:38] 2025-10-13 04:12:58,996 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 06:13:38] 2025-10-13 04:12:58,996 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 06:13:38] 2025-10-13 04:12:58,996 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 06:13:38] 2025-10-13 04:12:58,996 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 06:13:38] 2025-10-13 04:12:58,996 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 06:13:38] 2025-10-13 04:12:58,997 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:13:38] 2025-10-13 04:12:58,997 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:13:38] 2025-10-13 04:12:58,997 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:13:38] 2025-10-13 04:12:58,997 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:13:38] 2025-10-13 04:12:58,997 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:13:38] 2025-10-13 04:12:58,997 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:13:38] 2025-10-13 04:12:58,997 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:13:38] 2025-10-13 04:12:58,997 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:13:38] 2025-10-13 04:12:58,997 | INFO     | job 6839991153 has completed (purged errors)
[2025-10-13 06:13:38] 2025-10-13 04:12:58,997 | INFO     | overall cleanup function is called
[2025-10-13 06:13:38] 2025-10-13 04:13:00,001 | INFO     | --- collectZombieJob: --- 10, [3672569]
[2025-10-13 06:13:38] 2025-10-13 04:13:00,002 | INFO     | zombie collector waiting for pid 3672569
[2025-10-13 06:13:38] 2025-10-13 04:13:00,002 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:13:38] 2025-10-13 04:13:00,002 | INFO     | collected zombie processes
[2025-10-13 06:13:38] 2025-10-13 04:13:00,002 | INFO     | will attempt to kill all subprocesses of pid=3672569
[2025-10-13 06:13:38] 2025-10-13 04:13:00,045 | INFO     | process IDs to be killed: [3672569] (in reverse order)
[2025-10-13 06:13:38] 2025-10-13 04:13:00,075 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:13:38] 2025-10-13 04:13:00,075 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:13:38] 2025-10-13 04:13:00,077 | INFO     | did not find any defunct processes belonging to 3672569
[2025-10-13 06:13:38] 2025-10-13 04:13:00,078 | INFO     | did not find any defunct processes belonging to 3672569
[2025-10-13 06:13:38] 2025-10-13 04:13:00,078 | INFO     | ready for new job
[2025-10-13 06:13:38] 2025-10-13 04:13:00,078 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:13:38] 2025-10-13 04:13:00,079 | INFO     | ***************************************
[2025-10-13 06:13:38] 2025-10-13 04:13:00,079 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:13:38] 2025-10-13 04:13:00,079 | INFO     | ***************************************
[2025-10-13 06:13:38] 2025-10-13 04:13:00,079 | INFO     | 
[2025-10-13 06:13:38] 2025-10-13 04:13:00,080 | INFO     | architecture information:
[2025-10-13 06:13:38] 2025-10-13 04:13:00,080 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:13:38] 2025-10-13 04:13:00,092 | INFO     | cat /etc/os-release:
[2025-10-13 06:13:38] NAME="CentOS Linux"
[2025-10-13 06:13:38] VERSION="7 (Core)"
[2025-10-13 06:13:38] ID="centos"
[2025-10-13 06:13:38] ID_LIKE="rhel fedora"
[2025-10-13 06:13:38] VERSION_ID="7"
[2025-10-13 06:13:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:13:38] ANSI_COLOR="0;31"
[2025-10-13 06:13:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:13:38] HOME_URL="https://www.centos.org/"
[2025-10-13 06:13:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:13:38] 
[2025-10-13 06:13:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:13:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:13:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:13:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:13:38] 
[2025-10-13 06:13:38] 2025-10-13 04:13:00,093 | INFO     | ***************************************
[2025-10-13 06:13:38] 2025-10-13 04:13:00,596 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 06:13:38] 2025-10-13 04:13:00,611 | INFO     | sufficient remaining disk space (332869402624 B)
[2025-10-13 06:13:38] 2025-10-13 04:13:00,611 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:13:38] 2025-10-13 04:13:00,611 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:13:38] 2025-10-13 04:13:00,611 | INFO     | update_server=False
[2025-10-13 06:13:38] 2025-10-13 04:13:00,611 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:13:38] 2025-10-13 04:13:00,611 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 06:13:38] 2025-10-13 04:13:00,611 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:13:38] 2025-10-13 04:13:00,611 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:13:38] 2025-10-13 04:13:00,611 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:13:38] 2025-10-13 04:13:00,611 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:13:38] 2025-10-13 04:13:00,612 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:13:38] 2025-10-13 04:13:00,944 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:13:38] 2025-10-13 04:13:00,991 | INFO     | all data control threads have been joined
[2025-10-13 06:13:38] 2025-10-13 04:13:01,593 | INFO     | all payload control threads have been joined
[2025-10-13 06:13:38] 2025-10-13 04:13:01,596 | INFO     | all job control threads have been joined
[2025-10-13 06:13:38] 2025-10-13 04:13:01,614 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:13:38] 2025-10-13 04:13:01,614 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:13:38] 2025-10-13 04:13:01,614 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:13:38] 2025-10-13 04:13:01,615 | INFO     | aborting loop
[2025-10-13 06:13:38] 2025-10-13 04:13:01,844 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:13:38] 2025-10-13 04:13:01,992 | INFO     | [data] control thread has finished
[2025-10-13 06:13:38] 2025-10-13 04:13:02,503 | INFO     | [job] validate thread has finished
[2025-10-13 06:13:38] 2025-10-13 04:13:02,571 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:13:38] 2025-10-13 04:13:02,598 | INFO     | [payload] control thread has finished
[2025-10-13 06:13:38] 2025-10-13 04:13:02,602 | INFO     | [job] control thread has finished
[2025-10-13 06:13:38] 2025-10-13 04:13:02,617 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:13:38] 2025-10-13 04:13:02,620 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:13:38] 2025-10-13 04:13:02,763 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:13:38] 2025-10-13 04:13:02,816 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:13:38] 2025-10-13 04:13:02,831 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:13:38] 2025-10-13 04:13:03,109 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:13:38] 2025-10-13 04:13:04,951 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:13:38] 2025-10-13 04:13:11,177 | INFO     | job.realtimelogging is not enabled
[2025-10-13 06:13:38] 2025-10-13 04:13:12,183 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:13:38] 2025-10-13 04:13:32,294 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:13:38] 2025-10-13 04:13:33,738 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139710645602112)>', '<ExcThread(monitor, started 139709548312320)>']
[2025-10-13 06:13:38] 2025-10-13 04:13:33,785 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:13:38] 2025-10-13 04:13:33,785 | INFO     | [monitor] control thread has ended
[2025-10-13 06:13:38] 2025-10-13 04:13:38,764 | INFO     | all workflow threads have been joined
[2025-10-13 06:13:38] 2025-10-13 04:13:38,764 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:13:38] 2025-10-13 04:13:38,765 | INFO     | traces error code: 0
[2025-10-13 06:13:38] 2025-10-13 04:13:38,765 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:13:38] 2025-10-13 04:13:38,831 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:13:38] 2025-10-13 04:13:38,835 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:13:38] 2025-10-13 04:13:38,839 [wrapper] pilotpid: 3666014
[2025-10-13 06:13:38] 2025-10-13 04:13:38,843 [wrapper] Pilot exit status: 0
[2025-10-13 06:13:38] 2025-10-13 04:13:38,853 [wrapper] pandaids: 6839991153
[2025-10-13 06:13:38] 2025-10-13 04:13:38,874 [wrapper] cleanup supervisor_pilot 3682166 3666015
[2025-10-13 06:13:38] 2025-10-13 04:13:38,878 [wrapper] Test setup, not cleaning
[2025-10-13 06:13:38] 2025-10-13 04:13:38,882 [wrapper] apfmon messages muted
[2025-10-13 06:13:38] 2025-10-13 04:13:38,885 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:13:38] 2025-10-13 04:13:38,889 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:13:38]  *** Error codes and diagnostics ***
[2025-10-13 06:13:38]     "exeErrorCode": 0,
[2025-10-13 06:13:38]     "exeErrorDiag": "",
[2025-10-13 06:13:38]     "pilotErrorCode": 0,
[2025-10-13 06:13:38]     "pilotErrorDiag": "",
[2025-10-13 06:13:38]  *** Listing of results directory ***
[2025-10-13 06:13:38] total 409220
[2025-10-13 06:13:38] -rw-r--r-- 1 boinc boinc    557409 Oct 12 15:05 pilot3.tar.gz
[2025-10-13 06:13:38] -rw-r--r-- 1 boinc boinc      5112 Oct 12 15:17 queuedata.json
[2025-10-13 06:13:38] -rwx------ 1 boinc boinc     36292 Oct 12 15:17 runpilot2-wrapper.sh
[2025-10-13 06:13:38] -rw-r--r-- 1 boinc boinc       100 Oct 13 05:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:13:38] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 05:03 run_atlas
[2025-10-13 06:13:38] -rw-r--r-- 1 boinc boinc       105 Oct 13 05:03 job.xml
[2025-10-13 06:13:38] -rw-r--r-- 2 boinc boinc 219978648 Oct 13 05:03 EVNT.46676267._003861.pool.root.1
[2025-10-13 06:13:38] -rw-r--r-- 2 boinc boinc    569674 Oct 13 05:03 input.tar.gz
[2025-10-13 06:13:38] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:03 start_atlas.sh
[2025-10-13 06:13:38] drwxrwx--x 2 boinc boinc      4096 Oct 13 05:03 shared
[2025-10-13 06:13:38] -rw-r--r-- 1 boinc boinc         0 Oct 13 05:03 boinc_setup_complete
[2025-10-13 06:13:38] -rw-r--r-- 1 boinc boinc      6372 Oct 13 05:03 init_data.xml
[2025-10-13 06:13:38] -rw-r--r-- 1 boinc boinc         0 Oct 13 05:03 boinc_lockfile
[2025-10-13 06:13:38] -rw-r--r-- 1 boinc boinc      2547 Oct 13 05:03 pandaJob.out
[2025-10-13 06:13:38] -rw------- 1 boinc boinc    974373 Oct 13 05:03 agis_schedconf.cvmfs.json
[2025-10-13 06:13:38] -rw------- 1 boinc boinc   1560580 Oct 13 05:03 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:13:38] drwx------ 5 boinc boinc      4096 Oct 13 05:03 pilot3
[2025-10-13 06:13:38] -rw------- 1 boinc boinc 193444364 Oct 13 06:12 HITS.46676269._079282.pool.root.1
[2025-10-13 06:13:38] -rw-r--r-- 1 boinc boinc       529 Oct 13 06:12 boinc_task_state.xml
[2025-10-13 06:13:38] -rw------- 1 boinc boinc        95 Oct 13 06:12 pilot_heartbeat.json
[2025-10-13 06:13:38] -rw------- 1 boinc boinc      1025 Oct 13 06:12 memory_monitor_summary.json
[2025-10-13 06:13:38] -rw------- 1 boinc boinc    242415 Oct 13 06:12 log.46676269._079282.job.log.tgz.1
[2025-10-13 06:13:38] -rw------- 1 boinc boinc      7765 Oct 13 06:12 heartbeat.json
[2025-10-13 06:13:38] -rw-r--r-- 1 boinc boinc        27 Oct 13 06:13 wrapper_checkpoint.txt
[2025-10-13 06:13:38] -rw-r--r-- 1 boinc boinc      8192 Oct 13 06:13 boinc_mmap_file
[2025-10-13 06:13:38] -rw------- 1 boinc boinc      4628 Oct 13 06:13 pilotlog.txt
[2025-10-13 06:13:38] -rw------- 1 boinc boinc    621028 Oct 13 06:13 log.46676269._079282.job.log.1
[2025-10-13 06:13:38] -rw------- 1 boinc boinc       357 Oct 13 06:13 output.list
[2025-10-13 06:13:38] -rw-r--r-- 1 boinc boinc       620 Oct 13 06:13 runtime_log
[2025-10-13 06:13:38] -rw------- 1 boinc boinc    880640 Oct 13 06:13 result.tar.gz
[2025-10-13 06:13:38] -rw-r--r-- 1 boinc boinc      8787 Oct 13 06:13 runtime_log.err
[2025-10-13 06:13:38] -rw------- 1 boinc boinc       660 Oct 13 06:13 LYzLDmN8AS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtyjNDm1n4SYo.diag
[2025-10-13 06:13:38] -rw-r--r-- 1 boinc boinc     12366 Oct 13 06:13 stderr.txt
[2025-10-13 06:13:38] HITS file was successfully produced:
[2025-10-13 06:13:38] -rw------- 1 boinc boinc 193444364 Oct 13 06:12 shared/HITS.pool.root.1
[2025-10-13 06:13:38]  *** Contents of shared directory: ***
[2025-10-13 06:13:38] total 405180
[2025-10-13 06:13:38] -rw-r--r-- 2 boinc boinc 219978648 Oct 13 05:03 ATLAS.root_0
[2025-10-13 06:13:38] -rw-r--r-- 2 boinc boinc    569674 Oct 13 05:03 input.tar.gz
[2025-10-13 06:13:38] -rw-r--r-- 2 boinc boinc     15120 Oct 13 05:03 start_atlas.sh
[2025-10-13 06:13:38] -rw------- 1 boinc boinc 193444364 Oct 13 06:12 HITS.pool.root.1
[2025-10-13 06:13:38] -rw------- 1 boinc boinc    880640 Oct 13 06:13 result.tar.gz
06:13:40 (3662222): run_atlas exited; CPU time 15628.752920
06:13:40 (3662222): called boinc_finish(0)

</stderr_txt>
]]>

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