Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
21:12:55 (5963): wrapper (7.7.26015): starting
21:12:55 (5963): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 21:12:55] Arguments: --nthreads 8
[2025-10-12 21:12:55] Threads: 8
[2025-10-12 21:12:55] Checking for CVMFS
[2025-10-12 21:12:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:12:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:12:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:12:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:12:55] 2.11.0.0 4321 1768 59784 151633 1 186 1989626 4096001 1069 130560 0 544684 98.793 725429 1003 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-12 21:12:55] CVMFS is ok
[2025-10-12 21:12:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:12:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:12:55] Further information can be found at the LHC@home message board.
[2025-10-12 21:12:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:12:55] Checking for apptainer binary...
[2025-10-12 21:12:55] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-12 21:12:55] apptainer is not installed, using version from CVMFS
[2025-10-12 21:12:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:12:55] WARNING: Environment variable TMPDIR already has value [/tmp/job_10524589/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node169
[2025-10-12 21:12:55] apptainer works
[2025-10-12 21:12:55] Set ATHENA_PROC_NUMBER=8
[2025-10-12 21:12:55] Set ATHENA_CORE_NUMBER=8
[2025-10-12 21:12:55] Starting ATLAS job with PandaID=6840181416
[2025-10-12 21:12:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10524589/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:01:14]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:01:14]  lfn=log.46676269._080375.job.log.tgz.1
[2025-10-12 22:01:14]  mtime=0
[2025-10-12 22:01:14]  protocol_id=None
[2025-10-12 22:01:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 22:01:14]  replicas=None
[2025-10-12 22:01:14]  scope=mc23_13p6TeV
[2025-10-12 22:01:14]  status=None
[2025-10-12 22:01:14]  status_code=0
[2025-10-12 22:01:14]  storage_token=
[2025-10-12 22:01:14]  surl=/tmp/job_10524589/atlas/pilot/slots/0/PanDA_Pilot-6840181416/log.46676269._080375.job.log.tgz.1
[2025-10-12 22:01:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/22/98/log.46676269._080375.job.log.tgz.1
[2025-10-12 22:01:14]  workdir=None
[2025-10-12 22:01:14] ]
[2025-10-12 22:01:14] 2025-10-12 20:00:40,613 | INFO     | transferring file log.46676269._080375.job.log.tgz.1 from /tmp/job_10524589/atlas/pilot/slots/0/PanDA_Pilot-6840181416/log.46676269._080375.job.log.tgz.1 to /tmp/j
[2025-10-12 22:01:14] 2025-10-12 20:00:40,613 | INFO     | executing command: /usr/bin/env mv /tmp/job_10524589/atlas/pilot/slots/0/PanDA_Pilot-6840181416/log.46676269._080375.job.log.tgz.1 /tmp/job_10524589/atlas/pilot/sl
[2025-10-12 22:01:14] 2025-10-12 20:00:40,621 | INFO     | adding to output.list: log.46676269._080375.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/22/98/log.46676269._080375.job.log.tg
[2025-10-12 22:01:14] 2025-10-12 20:00:40,621 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 22:01:14] 2025-10-12 20:00:40,621 | INFO     | summary of transferred files:
[2025-10-12 22:01:14] 2025-10-12 20:00:40,621 | INFO     |  -- lfn=log.46676269._080375.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 22:01:14] 2025-10-12 20:00:40,621 | INFO     | stage-out finished correctly
[2025-10-12 22:01:14] 2025-10-12 20:00:40,672 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 22:01:14] 2025-10-12 20:00:41,387 | INFO     | time since job start (2861s) is within the limit (172800.0s)
[2025-10-12 22:01:14] 2025-10-12 20:00:41,509 | INFO     | job 6840181416 has state=finished
[2025-10-12 22:01:14] 2025-10-12 20:00:41,509 | INFO     | preparing for final server update for job 6840181416 in state='finished'
[2025-10-12 22:01:14] 2025-10-12 20:00:41,509 | INFO     | this job has now completed (state=finished)
[2025-10-12 22:01:14] 2025-10-12 20:00:41,509 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 22:01:14] 2025-10-12 20:00:41,509 | INFO     | log transfer has been attempted: DONE
[2025-10-12 22:01:14] 2025-10-12 20:00:41,509 | INFO     | job 6840181416 has finished - writing final server update
[2025-10-12 22:01:14] 2025-10-12 20:00:41,509 | INFO     | total number of processed events: 400 (read)
[2025-10-12 22:01:14] 2025-10-12 20:00:41,510 | INFO     | executing command: lscpu
[2025-10-12 22:01:14] 2025-10-12 20:00:41,541 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 22:01:14] 2025-10-12 20:00:43,277 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 22:01:14] 2025-10-12 20:00:43,281 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2992.419187500001
[2025-10-12 22:01:14] 2025-10-12 20:00:43,286 | INFO     | using path: /tmp/job_10524589/atlas/pilot/slots/0/PanDA_Pilot-6840181416/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:01:14] 2025-10-12 20:00:43,287 | INFO     | extracted standard info from prmon json
[2025-10-12 22:01:14] 2025-10-12 20:00:43,287 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 22:01:14] 2025-10-12 20:00:43,287 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 22:01:14] 2025-10-12 20:00:43,287 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 22:01:14] 2025-10-12 20:00:43,287 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 22:01:14] 2025-10-12 20:00:43,288 | INFO     | fitting pss+swap vs Time
[2025-10-12 22:01:14] 2025-10-12 20:00:43,288 | INFO     | sum of square deviations: 19832930.0
[2025-10-12 22:01:14] 2025-10-12 20:00:43,288 | INFO     | sum of deviations: 28232568.999999974
[2025-10-12 22:01:14] 2025-10-12 20:00:43,288 | INFO     | mean x: 1760297892.5
[2025-10-12 22:01:14] 2025-10-12 20:00:43,288 | INFO     | mean y: 2507961.8
[2025-10-12 22:01:14] 2025-10-12 20:00:43,288 | INFO     | -- intersect: -2503310982.2773895
[2025-10-12 22:01:14] 2025-10-12 20:00:43,288 | INFO     | intersect: -2503310982.2773895
[2025-10-12 22:01:14] 2025-10-12 20:00:43,288 | INFO     | chi2: 0.001438625862428098
[2025-10-12 22:01:14] 2025-10-12 20:00:43,288 | INFO     | -- intersect: -2503310982.2773895
[2025-10-12 22:01:14] 2025-10-12 20:00:43,288 | INFO     | current memory leak: 1.42 B/s (using 40 data points, chi2=0.00)
[2025-10-12 22:01:14] 2025-10-12 20:00:43,288 | INFO     | could have reported an average CPU frequency of 2671 MHz (5 samples)
[2025-10-12 22:01:14] 2025-10-12 20:00:43,289 | INFO     | ..............................
[2025-10-12 22:01:14] 2025-10-12 20:00:43,289 | INFO     | . Timing measurements:
[2025-10-12 22:01:14] 2025-10-12 20:00:43,289 | INFO     | . get job = 0 s
[2025-10-12 22:01:14] 2025-10-12 20:00:43,289 | INFO     | . initial setup = 1 s
[2025-10-12 22:01:14] 2025-10-12 20:00:43,289 | INFO     | . payload setup = 2 s
[2025-10-12 22:01:14] 2025-10-12 20:00:43,289 | INFO     | . stage-in = 0 s
[2025-10-12 22:01:14] 2025-10-12 20:00:43,289 | INFO     | . payload execution = 2840 s
[2025-10-12 22:01:14] 2025-10-12 20:00:43,289 | INFO     | . stage-out = 0 s
[2025-10-12 22:01:14] 2025-10-12 20:00:43,289 | INFO     | . log creation = 0 s
[2025-10-12 22:01:14] 2025-10-12 20:00:43,289 | INFO     | ..............................
[2025-10-12 22:01:14] 2025-10-12 20:00:43,339 | INFO     | 
[2025-10-12 22:01:14] 2025-10-12 20:00:43,339 | INFO     | job summary report
[2025-10-12 22:01:14] 2025-10-12 20:00:43,339 | INFO     | --------------------------------------------------
[2025-10-12 22:01:14] 2025-10-12 20:00:43,339 | INFO     | PanDA job id: 6840181416
[2025-10-12 22:01:14] 2025-10-12 20:00:43,339 | INFO     | task id: 46676269
[2025-10-12 22:01:14] 2025-10-12 20:00:43,339 | INFO     | errors: (none)
[2025-10-12 22:01:14] 2025-10-12 20:00:43,339 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 22:01:14] 2025-10-12 20:00:43,339 | INFO     | pilot state: finished 
[2025-10-12 22:01:14] 2025-10-12 20:00:43,340 | INFO     | transexitcode: 0
[2025-10-12 22:01:14] 2025-10-12 20:00:43,340 | INFO     | exeerrorcode: 0
[2025-10-12 22:01:14] 2025-10-12 20:00:43,340 | INFO     | exeerrordiag: 
[2025-10-12 22:01:14] 2025-10-12 20:00:43,340 | INFO     | exitcode: 0
[2025-10-12 22:01:14] 2025-10-12 20:00:43,340 | INFO     | exitmsg: OK
[2025-10-12 22:01:14] 2025-10-12 20:00:43,340 | INFO     | cpuconsumptiontime: 20490 s
[2025-10-12 22:01:14] 2025-10-12 20:00:43,340 | INFO     | nevents: 400
[2025-10-12 22:01:14] 2025-10-12 20:00:43,340 | INFO     | neventsw: 0
[2025-10-12 22:01:14] 2025-10-12 20:00:43,340 | INFO     | pid: 23433
[2025-10-12 22:01:14] 2025-10-12 20:00:43,340 | INFO     | pgrp: 23433
[2025-10-12 22:01:14] 2025-10-12 20:00:43,340 | INFO     | corecount: 8
[2025-10-12 22:01:14] 2025-10-12 20:00:43,340 | INFO     | event service: False
[2025-10-12 22:01:14] 2025-10-12 20:00:43,340 | INFO     | sizes: {0: 2348983, 2: 2349245, 11: 2349273, 2846: 2374766, 2847: 2383850, 2850: 2384020}
[2025-10-12 22:01:14] 2025-10-12 20:00:43,340 | INFO     | --------------------------------------------------
[2025-10-12 22:01:14] 2025-10-12 20:00:43,340 | INFO     | 
[2025-10-12 22:01:14] 2025-10-12 20:00:43,340 | INFO     | executing command: ls -lF /tmp/job_10524589/atlas/pilot/slots/0
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | job 6840181416 has completed (purged errors)
[2025-10-12 22:01:14] 2025-10-12 20:00:43,349 | INFO     | overall cleanup function is called
[2025-10-12 22:01:14] 2025-10-12 20:00:44,355 | INFO     | --- collectZombieJob: --- 10, [23433]
[2025-10-12 22:01:14] 2025-10-12 20:00:44,356 | INFO     | zombie collector waiting for pid 23433
[2025-10-12 22:01:14] 2025-10-12 20:00:44,356 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:01:14] 2025-10-12 20:00:44,356 | INFO     | collected zombie processes
[2025-10-12 22:01:14] 2025-10-12 20:00:44,356 | INFO     | will attempt to kill all subprocesses of pid=23433
[2025-10-12 22:01:14] 2025-10-12 20:00:44,466 | INFO     | process IDs to be killed: [23433] (in reverse order)
[2025-10-12 22:01:14] 2025-10-12 20:00:44,506 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:01:14] 2025-10-12 20:00:44,507 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:01:14] 2025-10-12 20:00:44,510 | INFO     | did not find any defunct processes belonging to 23433
[2025-10-12 22:01:14] 2025-10-12 20:00:44,513 | INFO     | did not find any defunct processes belonging to 23433
[2025-10-12 22:01:14] 2025-10-12 20:00:44,514 | INFO     | ready for new job
[2025-10-12 22:01:14] 2025-10-12 20:00:44,514 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:01:14] 2025-10-12 20:00:44,514 | INFO     | ***************************************
[2025-10-12 22:01:14] 2025-10-12 20:00:44,514 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-12 22:01:14] 2025-10-12 20:00:44,514 | INFO     | ***************************************
[2025-10-12 22:01:14] 2025-10-12 20:00:44,514 | INFO     | 
[2025-10-12 22:01:14] 2025-10-12 20:00:44,529 | INFO     | architecture information:
[2025-10-12 22:01:14] 2025-10-12 20:00:44,529 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:01:14] 2025-10-12 20:00:44,535 | INFO     | cat /etc/os-release:
[2025-10-12 22:01:14] NAME="CentOS Linux"
[2025-10-12 22:01:14] VERSION="7 (Core)"
[2025-10-12 22:01:14] ID="centos"
[2025-10-12 22:01:14] ID_LIKE="rhel fedora"
[2025-10-12 22:01:14] VERSION_ID="7"
[2025-10-12 22:01:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:01:14] ANSI_COLOR="0;31"
[2025-10-12 22:01:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:01:14] HOME_URL="https://www.centos.org/"
[2025-10-12 22:01:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:01:14] 
[2025-10-12 22:01:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:01:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:01:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:01:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:01:14] 
[2025-10-12 22:01:14] 2025-10-12 20:00:44,535 | INFO     | ***************************************
[2025-10-12 22:01:14] 2025-10-12 20:00:45,038 | INFO     | executing command: df -mP /tmp/job_10524589/atlas/pilot/slots/0
[2025-10-12 22:01:14] 2025-10-12 20:00:45,045 | INFO     | sufficient remaining disk space (224128925696 B)
[2025-10-12 22:01:14] 2025-10-12 20:00:45,045 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:01:14] 2025-10-12 20:00:45,045 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:01:14] 2025-10-12 20:00:45,045 | INFO     | update_server=False
[2025-10-12 22:01:14] 2025-10-12 20:00:45,045 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:01:14] 2025-10-12 20:00:45,045 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:01:14] 2025-10-12 20:00:45,532 | INFO     | all data control threads have been joined
[2025-10-12 22:01:14] 2025-10-12 20:00:45,648 | WARNING  | process 23433 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 22:01:14] 2025-10-12 20:00:45,735 | INFO     | using path: /tmp/job_10524589/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:01:14] 2025-10-12 20:00:45,844 | INFO     | number of running child processes to parent process 23433: 1
[2025-10-12 22:01:14] 2025-10-12 20:00:45,844 | INFO     | maximum number of monitored processes: 6
[2025-10-12 22:01:14] 2025-10-12 20:00:45,844 | INFO     | aborting job monitoring since job object (job id=6840181416) has expired
[2025-10-12 22:01:14] 2025-10-12 20:00:45,844 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:01:14] 2025-10-12 20:00:45,844 | INFO     | will abort loop
[2025-10-12 22:01:14] 2025-10-12 20:00:46,050 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:01:14] 2025-10-12 20:00:46,050 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:01:14] 2025-10-12 20:00:46,155 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:01:14] 2025-10-12 20:00:46,180 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:01:14] 2025-10-12 20:00:46,201 | INFO     | all job control threads have been joined
[2025-10-12 22:01:14] 2025-10-12 20:00:46,292 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:01:14] 2025-10-12 20:00:46,335 | INFO     | all payload control threads have been joined
[2025-10-12 22:01:14] 2025-10-12 20:00:46,538 | INFO     | [data] control thread has finished
[2025-10-12 22:01:14] 2025-10-12 20:00:46,726 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:01:14] 2025-10-12 20:00:46,731 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:01:14] 2025-10-12 20:00:46,849 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:01:14] 2025-10-12 20:00:46,958 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:01:14] 2025-10-12 20:00:47,025 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:01:14] 2025-10-12 20:00:47,206 | INFO     | [job] control thread has finished
[2025-10-12 22:01:14] 2025-10-12 20:00:47,340 | INFO     | [payload] control thread has finished
[2025-10-12 22:01:14] 2025-10-12 20:00:47,389 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:01:14] 2025-10-12 20:00:47,481 | INFO     | [job] validate thread has finished
[2025-10-12 22:01:14] 2025-10-12 20:00:47,481 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:01:14] 2025-10-12 20:00:48,185 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:01:14] 2025-10-12 20:00:50,731 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:01:14] 2025-10-12 20:01:04,415 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:01:14] 2025-10-12 20:01:06,257 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060466944)>']
[2025-10-12 22:01:14] 2025-10-12 20:01:11,283 | INFO     | all workflow threads have been joined
[2025-10-12 22:01:14] 2025-10-12 20:01:11,283 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:01:14] 2025-10-12 20:01:11,283 | INFO     | traces error code: 0
[2025-10-12 22:01:14] 2025-10-12 20:01:11,283 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:01:14] 2025-10-12 20:01:14,582 | INFO     | PID=15007 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 22:01:14] 2025-10-12 20:01:14,582 | INFO     | .. there are 7 such processes running
[2025-10-12 22:01:14] 2025-10-12 20:01:14,582 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:01:14] 2025-10-12 20:01:14,583 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:01:14] 2025-10-12 20:01:14,583 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:01:14] 2025-10-12 20:01:14,583 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:01:14] 2025-10-12 20:01:14,583 | INFO     | [monitor] control thread has ended
[2025-10-12 22:01:14] 2025-10-12 20:01:14,632 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:01:14] 2025-10-12 20:01:14,633 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:01:14] 2025-10-12 20:01:14,635 [wrapper] pilotpid: 15007
[2025-10-12 22:01:14] 2025-10-12 20:01:14,636 [wrapper] Pilot exit status: 0
[2025-10-12 22:01:14] 2025-10-12 20:01:14,640 [wrapper] pandaids: 6840181416
[2025-10-12 22:01:14] 2025-10-12 20:01:14,663 [wrapper] cleanup supervisor_pilot 21705 15008
[2025-10-12 22:01:14] 2025-10-12 20:01:14,665 [wrapper] Test setup, not cleaning
[2025-10-12 22:01:14] 2025-10-12 20:01:14,666 [wrapper] apfmon messages muted
[2025-10-12 22:01:14] 2025-10-12 20:01:14,667 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:01:14] 2025-10-12 20:01:14,668 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:01:14]  *** Error codes and diagnostics ***
[2025-10-12 22:01:14]     "exeErrorCode": 0,
[2025-10-12 22:01:14]     "exeErrorDiag": "",
[2025-10-12 22:01:14]     "pilotErrorCode": 0,
[2025-10-12 22:01:14]     "pilotErrorDiag": "",
[2025-10-12 22:01:14]  *** Listing of results directory ***
[2025-10-12 22:01:14] total 406548
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user    563267 Oct  7 09:02 pilot3.tar.gz
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user      5112 Oct 12 16:11 queuedata.json
[2025-10-12 22:01:14] -rwx------ 1 mf493845 unix-user     36292 Oct 12 16:11 runpilot2-wrapper.sh
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user       100 Oct 12 20:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:01:14] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 12 20:16 run_atlas
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user       105 Oct 12 20:16 job.xml
[2025-10-12 22:01:14] -rw-r--r-- 2 mf493845 unix-user 219966092 Oct 12 21:12 EVNT.46676267._004217.pool.root.1
[2025-10-12 22:01:14] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 21:12 start_atlas.sh
[2025-10-12 22:01:14] drwxrwx--x 2 mf493845 unix-user       100 Oct 12 21:12 shared
[2025-10-12 22:01:14] -rw-r--r-- 2 mf493845 unix-user    576715 Oct 12 21:12 input.tar.gz
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user      6394 Oct 12 21:12 init_data.xml
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user         0 Oct 12 21:12 boinc_setup_complete
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user      8192 Oct 12 21:12 boinc_mmap_file
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user         0 Oct 12 21:12 boinc_lockfile
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user      2550 Oct 12 21:12 pandaJob.out
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user    975528 Oct 12 21:12 agis_schedconf.cvmfs.json
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user   1560580 Oct 12 21:12 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:01:14] drwx------ 4 mf493845 unix-user       420 Oct 12 21:13 pilot3
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user 190945407 Oct 12 22:00 HITS.46676269._080375.pool.root.1
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user      1010 Oct 12 22:00 memory_monitor_summary.json
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user        95 Oct 12 22:00 pilot_heartbeat.json
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user    301330 Oct 12 22:00 log.46676269._080375.job.log.tgz.1
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user      7763 Oct 12 22:00 heartbeat.json
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user       820 Oct 12 22:01 pilotlog.txt
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user    454609 Oct 12 22:01 log.46676269._080375.job.log.1
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user       357 Oct 12 22:01 output.list
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user       620 Oct 12 22:01 runtime_log
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user    778240 Oct 12 22:01 result.tar.gz
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user      9076 Oct 12 22:01 runtime_log.err
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user       642 Oct 12 22:01 4eYKDmhyBS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5BkNDm60ia4n.diag
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user     22094 Oct 12 22:01 stderr.txt
[2025-10-12 22:01:14] HITS file was successfully produced:
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user 190945407 Oct 12 22:00 shared/HITS.pool.root.1
[2025-10-12 22:01:14]  *** Contents of shared directory: ***
[2025-10-12 22:01:14] total 402624
[2025-10-12 22:01:14] -rw-r--r-- 2 mf493845 unix-user 219966092 Oct 12 21:12 ATLAS.root_0
[2025-10-12 22:01:14] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 21:12 start_atlas.sh
[2025-10-12 22:01:14] -rw-r--r-- 2 mf493845 unix-user    576715 Oct 12 21:12 input.tar.gz
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user 190945407 Oct 12 22:00 HITS.pool.root.1
[2025-10-12 22:01:14] -rw------- 1 mf493845 unix-user    778240 Oct 12 22:01 result.tar.gz
22:01:16 (5963): run_atlas exited; CPU time 20535.500593
22:01:16 (5963): called boinc_finish(0)

</stderr_txt>
]]>

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