Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:16:26 (26879): wrapper (7.7.26015): starting
13:16:26 (26879): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 13:16:26] Arguments: --nthreads 12
[2025-10-12 13:16:26] Threads: 12
[2025-10-12 13:16:26] Checking for CVMFS
[2025-10-12 13:16:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 13:16:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 13:16:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 13:16:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 13:16:26] 2.11.2.0 2925 223170 97484 151629 2 56 11517923 20275201 1 130560 1 108542846 99.985 12902410 12179 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 13:16:26] CVMFS is ok
[2025-10-12 13:16:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 13:16:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 13:16:26] Further information can be found at the LHC@home message board.
[2025-10-12 13:16:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 13:16:26] Checking for apptainer binary...
[2025-10-12 13:16:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 13:16:26] Running /usr/bin/apptainer --version
[2025-10-12 13:16:26] apptainer version 1.3.2-1.el7
[2025-10-12 13:16:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 13:16:28] c-205-10.aglt2.org
[2025-10-12 13:16:28] apptainer works
[2025-10-12 13:16:28] Set ATHENA_PROC_NUMBER=12
[2025-10-12 13:16:28] Set ATHENA_CORE_NUMBER=12
[2025-10-12 13:16:28] Starting ATLAS job with PandaID=6840181648
[2025-10-12 13:16:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 14:32:56]  *** The last 200 lines of the pilot log: ***
[2025-10-12 14:32:56] 2025-10-12 18:31:59,613 | INFO     | stage-out finished correctly
[2025-10-12 14:32:56] 2025-10-12 18:31:59,700 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 14:32:56] 2025-10-12 18:32:00,288 | INFO     | time since job start (4517s) is within the limit (172800.0s)
[2025-10-12 14:32:56] 2025-10-12 18:32:00,909 | WARNING  | process 5598 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 14:32:56] 2025-10-12 18:32:00,909 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840181648/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 14:32:56] 2025-10-12 18:32:00,910 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840181648/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 14:32:56] 2025-10-12 18:32:00,910 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 14:32:56] 2025-10-12 18:32:00,911 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 14:32:56] 2025-10-12 18:32:00,911 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4200792 B
[2025-10-12 14:32:56] 2025-10-12 18:32:00,911 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16028 B
[2025-10-12 14:32:56] 2025-10-12 18:32:00,911 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 14:32:56] 2025-10-12 18:32:00,931 | INFO     | sufficient remaining disk space (29359079424 B)
[2025-10-12 14:32:56] 2025-10-12 18:32:00,932 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 14:32:56] 2025-10-12 18:32:00,933 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6840181648: 4499830 B (within 2537553920 B limit)
[2025-10-12 14:32:56] 2025-10-12 18:32:00,934 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6840181648/HITS.46676269._080523.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 14:32:56] 2025-10-12 18:32:00,934 | INFO     | total size of present files: 0 B (workdir size: 4499830 B)
[2025-10-12 14:32:56] 2025-10-12 18:32:00,934 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6840181648/HITS.46676269._080523.pool.root.1 since it does not exist
[2025-10-12 14:32:56] 2025-10-12 18:32:01,023 | INFO     | number of running child processes to parent process 5598: 1
[2025-10-12 14:32:56] 2025-10-12 18:32:01,024 | INFO     | maximum number of monitored processes: 6
[2025-10-12 14:32:56] 2025-10-12 18:32:01,580 | INFO     | job 6840181648 has state=finished
[2025-10-12 14:32:56] 2025-10-12 18:32:01,581 | INFO     | preparing for final server update for job 6840181648 in state='finished'
[2025-10-12 14:32:56] 2025-10-12 18:32:01,582 | INFO     | this job has now completed (state=finished)
[2025-10-12 14:32:56] 2025-10-12 18:32:01,582 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 14:32:56] 2025-10-12 18:32:01,582 | INFO     | log transfer has been attempted: DONE
[2025-10-12 14:32:56] 2025-10-12 18:32:01,583 | INFO     | job 6840181648 has finished - writing final server update
[2025-10-12 14:32:56] 2025-10-12 18:32:01,583 | INFO     | total number of processed events: 400 (read)
[2025-10-12 14:32:56] 2025-10-12 18:32:01,584 | INFO     | executing command: lscpu
[2025-10-12 14:32:56] 2025-10-12 18:32:01,609 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 14:32:56] 2025-10-12 18:32:02,294 | INFO     | time since job start (4519s) is within the limit (172800.0s)
[2025-10-12 14:32:56] 2025-10-12 18:32:03,527 | INFO     | monitor loop #337: job 0:6840181648 is in state 'finished'
[2025-10-12 14:32:56] 2025-10-12 18:32:03,527 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:32:56] 2025-10-12 18:32:04,295 | INFO     | time since job start (4521s) is within the limit (172800.0s)
[2025-10-12 14:32:56] 2025-10-12 18:32:06,030 | INFO     | monitor loop #338: job 0:6840181648 is in state 'finished'
[2025-10-12 14:32:56] 2025-10-12 18:32:06,030 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:32:56] 2025-10-12 18:32:06,300 | INFO     | time since job start (4523s) is within the limit (172800.0s)
[2025-10-12 14:32:56] 2025-10-12 18:32:06,449 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 14:32:56] 2025-10-12 18:32:06,452 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1773.4166666666667
[2025-10-12 14:32:56] 2025-10-12 18:32:06,455 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840181648/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 14:32:56] 2025-10-12 18:32:06,456 | INFO     | extracted standard info from prmon json
[2025-10-12 14:32:56] 2025-10-12 18:32:06,456 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 14:32:56] 2025-10-12 18:32:06,456 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 14:32:56] 2025-10-12 18:32:06,457 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 14:32:56] 2025-10-12 18:32:06,457 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 14:32:56] 2025-10-12 18:32:06,458 | INFO     | fitting pss+swap vs Time
[2025-10-12 14:32:56] 2025-10-12 18:32:06,459 | INFO     | sum of square deviations: 93240818.0
[2025-10-12 14:32:56] 2025-10-12 18:32:06,459 | INFO     | sum of deviations: -7830944296.000001
[2025-10-12 14:32:56] 2025-10-12 18:32:06,459 | INFO     | mean x: 1760291750.0
[2025-10-12 14:32:56] 2025-10-12 18:32:06,459 | INFO     | mean y: 2797367.0149253733
[2025-10-12 14:32:56] 2025-10-12 18:32:06,459 | INFO     | -- intersect: 147843055900.12173
[2025-10-12 14:32:56] 2025-10-12 18:32:06,460 | INFO     | intersect: 147843055900.12173
[2025-10-12 14:32:56] 2025-10-12 18:32:06,460 | INFO     | chi2: 0.04840202565554564
[2025-10-12 14:32:56] 2025-10-12 18:32:06,460 | INFO     | -- intersect: 147843055900.12173
[2025-10-12 14:32:56] 2025-10-12 18:32:06,460 | INFO     | current memory leak: -83.99 B/s (using 67 data points, chi2=0.05)
[2025-10-12 14:32:56] 2025-10-12 18:32:06,460 | INFO     | could have reported an average CPU frequency of 2067 MHz (6 samples)
[2025-10-12 14:32:56] 2025-10-12 18:32:06,460 | INFO     | ..............................
[2025-10-12 14:32:56] 2025-10-12 18:32:06,461 | INFO     | . Timing measurements:
[2025-10-12 14:32:56] 2025-10-12 18:32:06,461 | INFO     | . get job = 0 s
[2025-10-12 14:32:56] 2025-10-12 18:32:06,461 | INFO     | . initial setup = 2 s
[2025-10-12 14:32:56] 2025-10-12 18:32:06,461 | INFO     | . payload setup = 7 s
[2025-10-12 14:32:56] 2025-10-12 18:32:06,461 | INFO     | . stage-in = 0 s
[2025-10-12 14:32:56] 2025-10-12 18:32:06,461 | INFO     | . payload execution = 4487 s
[2025-10-12 14:32:56] 2025-10-12 18:32:06,461 | INFO     | . stage-out = 0 s
[2025-10-12 14:32:56] 2025-10-12 18:32:06,461 | INFO     | . log creation = 0 s
[2025-10-12 14:32:56] 2025-10-12 18:32:06,461 | INFO     | ..............................
[2025-10-12 14:32:56] 2025-10-12 18:32:06,547 | INFO     | 
[2025-10-12 14:32:56] 2025-10-12 18:32:06,547 | INFO     | job summary report
[2025-10-12 14:32:56] 2025-10-12 18:32:06,547 | INFO     | --------------------------------------------------
[2025-10-12 14:32:56] 2025-10-12 18:32:06,548 | INFO     | PanDA job id: 6840181648
[2025-10-12 14:32:56] 2025-10-12 18:32:06,548 | INFO     | task id: 46676269
[2025-10-12 14:32:56] 2025-10-12 18:32:06,548 | INFO     | errors: (none)
[2025-10-12 14:32:56] 2025-10-12 18:32:06,548 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 14:32:56] 2025-10-12 18:32:06,548 | INFO     | pilot state: finished 
[2025-10-12 14:32:56] 2025-10-12 18:32:06,548 | INFO     | transexitcode: 0
[2025-10-12 14:32:56] 2025-10-12 18:32:06,549 | INFO     | exeerrorcode: 0
[2025-10-12 14:32:56] 2025-10-12 18:32:06,549 | INFO     | exeerrordiag: 
[2025-10-12 14:32:56] 2025-10-12 18:32:06,549 | INFO     | exitcode: 0
[2025-10-12 14:32:56] 2025-10-12 18:32:06,549 | INFO     | exitmsg: OK
[2025-10-12 14:32:56] 2025-10-12 18:32:06,549 | INFO     | cpuconsumptiontime: 48184 s
[2025-10-12 14:32:56] 2025-10-12 18:32:06,549 | INFO     | nevents: 400
[2025-10-12 14:32:56] 2025-10-12 18:32:06,550 | INFO     | neventsw: 0
[2025-10-12 14:32:56] 2025-10-12 18:32:06,550 | INFO     | pid: 5598
[2025-10-12 14:32:56] 2025-10-12 18:32:06,550 | INFO     | pgrp: 5598
[2025-10-12 14:32:56] 2025-10-12 18:32:06,550 | INFO     | corecount: 12
[2025-10-12 14:32:56] 2025-10-12 18:32:06,550 | INFO     | event service: False
[2025-10-12 14:32:56] 2025-10-12 18:32:06,550 | INFO     | sizes: {0: 2348029, 1: 2348885, 6: 2349147, 12: 2349175, 4499: 2375251, 4501: 2384433, 4508: 2384599}
[2025-10-12 14:32:56] 2025-10-12 18:32:06,550 | INFO     | --------------------------------------------------
[2025-10-12 14:32:56] 2025-10-12 18:32:06,551 | INFO     | 
[2025-10-12 14:32:56] 2025-10-12 18:32:06,551 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 14:32:56] 2025-10-12 18:32:06,575 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 14:32:56] 2025-10-12 18:32:06,575 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 14:32:56] 2025-10-12 18:32:06,576 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 14:32:56] 2025-10-12 18:32:06,576 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 14:32:56] 2025-10-12 18:32:06,576 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 14:32:56] 2025-10-12 18:32:06,576 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 14:32:56] 2025-10-12 18:32:06,576 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 14:32:56] 2025-10-12 18:32:06,576 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 14:32:56] 2025-10-12 18:32:06,577 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 14:32:56] 2025-10-12 18:32:06,577 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 14:32:56] 2025-10-12 18:32:06,577 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 14:32:56] 2025-10-12 18:32:06,577 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 14:32:56] 2025-10-12 18:32:06,577 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 14:32:56] 2025-10-12 18:32:06,577 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 14:32:56] 2025-10-12 18:32:06,578 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 14:32:56] 2025-10-12 18:32:06,578 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 14:32:56] 2025-10-12 18:32:06,578 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 14:32:56] 2025-10-12 18:32:06,578 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 14:32:56] 2025-10-12 18:32:06,578 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 14:32:56] 2025-10-12 18:32:06,578 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 14:32:56] 2025-10-12 18:32:06,579 | INFO     | job 6840181648 has completed (purged errors)
[2025-10-12 14:32:56] 2025-10-12 18:32:06,579 | INFO     | overall cleanup function is called
[2025-10-12 14:32:56] 2025-10-12 18:32:07,587 | INFO     | --- collectZombieJob: --- 10, [5598]
[2025-10-12 14:32:56] 2025-10-12 18:32:07,587 | INFO     | zombie collector waiting for pid 5598
[2025-10-12 14:32:56] 2025-10-12 18:32:07,587 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 14:32:56] 2025-10-12 18:32:07,588 | INFO     | collected zombie processes
[2025-10-12 14:32:56] 2025-10-12 18:32:07,588 | INFO     | will attempt to kill all subprocesses of pid=5598
[2025-10-12 14:32:56] 2025-10-12 18:32:07,691 | INFO     | process IDs to be killed: [5598] (in reverse order)
[2025-10-12 14:32:56] 2025-10-12 18:32:07,776 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 14:32:56] 2025-10-12 18:32:07,776 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 14:32:56] 2025-10-12 18:32:07,779 | INFO     | did not find any defunct processes belonging to 5598
[2025-10-12 14:32:56] 2025-10-12 18:32:07,782 | INFO     | did not find any defunct processes belonging to 5598
[2025-10-12 14:32:56] 2025-10-12 18:32:07,783 | INFO     | ready for new job
[2025-10-12 14:32:56] 2025-10-12 18:32:07,783 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 14:32:56] 2025-10-12 18:32:07,785 | INFO     | ***************************************
[2025-10-12 14:32:56] 2025-10-12 18:32:07,785 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 14:32:56] 2025-10-12 18:32:07,785 | INFO     | ***************************************
[2025-10-12 14:32:56] 2025-10-12 18:32:07,785 | INFO     | 
[2025-10-12 14:32:56] 2025-10-12 18:32:07,786 | INFO     | architecture information:
[2025-10-12 14:32:56] 2025-10-12 18:32:07,787 | INFO     | executing command: cat /etc/os-release
[2025-10-12 14:32:56] 2025-10-12 18:32:07,802 | INFO     | cat /etc/os-release:
[2025-10-12 14:32:56] NAME="CentOS Linux"
[2025-10-12 14:32:56] VERSION="7 (Core)"
[2025-10-12 14:32:56] ID="centos"
[2025-10-12 14:32:56] ID_LIKE="rhel fedora"
[2025-10-12 14:32:56] VERSION_ID="7"
[2025-10-12 14:32:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 14:32:56] ANSI_COLOR="0;31"
[2025-10-12 14:32:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 14:32:56] HOME_URL="https://www.centos.org/"
[2025-10-12 14:32:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 14:32:56] 
[2025-10-12 14:32:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 14:32:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 14:32:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 14:32:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 14:32:56] 
[2025-10-12 14:32:56] 2025-10-12 18:32:07,802 | INFO     | ***************************************
[2025-10-12 14:32:56] 2025-10-12 18:32:08,305 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 14:32:56] 2025-10-12 18:32:08,322 | INFO     | sufficient remaining disk space (29364322304 B)
[2025-10-12 14:32:56] 2025-10-12 18:32:08,323 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 14:32:56] 2025-10-12 18:32:08,323 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 14:32:56] 2025-10-12 18:32:08,323 | INFO     | update_server=False
[2025-10-12 14:32:56] 2025-10-12 18:32:08,323 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 14:32:56] 2025-10-12 18:32:08,324 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:32:56] 2025-10-12 18:32:08,324 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 14:32:56] 2025-10-12 18:32:08,365 | INFO     | all job control threads have been joined
[2025-10-12 14:32:56] 2025-10-12 18:32:08,533 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 14:32:56] 2025-10-12 18:32:08,533 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 14:32:56] 2025-10-12 18:32:08,533 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:32:56] 2025-10-12 18:32:08,534 | INFO     | will abort loop
[2025-10-12 14:32:56] 2025-10-12 18:32:09,111 | INFO     | all data control threads have been joined
[2025-10-12 14:32:56] 2025-10-12 18:32:09,329 | INFO     | [job] retrieve thread has finished
[2025-10-12 14:32:56] 2025-10-12 18:32:09,329 | INFO     | [job] queue monitor thread has finished
[2025-10-12 14:32:56] 2025-10-12 18:32:09,370 | INFO     | [job] control thread has finished
[2025-10-12 14:32:56] 2025-10-12 18:32:09,539 | INFO     | [job] job monitor thread has finished
[2025-10-12 14:32:56] 2025-10-12 18:32:09,540 | INFO     | [data] copytool_in thread has finished
[2025-10-12 14:32:56] 2025-10-12 18:32:09,631 | INFO     | all payload control threads have been joined
[2025-10-12 14:32:56] 2025-10-12 18:32:09,943 | INFO     | [payload] failed_post thread has finished
[2025-10-12 14:32:56] 2025-10-12 18:32:10,055 | INFO     | [job] validate thread has finished
[2025-10-12 14:32:56] 2025-10-12 18:32:10,112 | INFO     | [data] control thread has finished
[2025-10-12 14:32:56] 2025-10-12 18:32:10,113 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 14:32:56] 2025-10-12 18:32:10,292 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 14:32:56] 2025-10-12 18:32:10,330 | INFO     | [data] copytool_out thread has finished
[2025-10-12 14:32:56] 2025-10-12 18:32:10,376 | INFO     | [payload] validate_post thread has finished
[2025-10-12 14:32:56] 2025-10-12 18:32:10,565 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 14:32:56] 2025-10-12 18:32:10,609 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 14:32:56] 2025-10-12 18:32:10,611 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 14:32:56] 2025-10-12 18:32:10,636 | INFO     | [payload] control thread has finished
[2025-10-12 14:32:56] 2025-10-12 18:32:14,298 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 14:32:56] 2025-10-12 18:32:39,507 | INFO     | PID=30551 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 14:32:56] 2025-10-12 18:32:39,507 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 14:32:56] 2025-10-12 18:32:39,507 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 14:32:56] 2025-10-12 18:32:39,507 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 14:32:56] 2025-10-12 18:32:50,104 | INFO     | [monitor] cgroup control has ended
[2025-10-12 14:32:56] 2025-10-12 18:32:51,456 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139732461647680)>', '<ExcThread(monitor, started 139732155606784)>']
[2025-10-12 14:32:56] 2025-10-12 18:32:51,563 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 14:32:56] 2025-10-12 18:32:51,564 | INFO     | [monitor] control thread has ended
[2025-10-12 14:32:56] 2025-10-12 18:32:56,481 | INFO     | all workflow threads have been joined
[2025-10-12 14:32:56] 2025-10-12 18:32:56,482 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 14:32:56] 2025-10-12 18:32:56,482 | INFO     | traces error code: 0
[2025-10-12 14:32:56] 2025-10-12 18:32:56,482 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 14:32:56] 2025-10-12 18:32:56,578 [wrapper] ==== pilot stdout END ====
[2025-10-12 14:32:56] 2025-10-12 18:32:56,582 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 14:32:56] 2025-10-12 18:32:56,586 [wrapper] pilotpid: 30551
[2025-10-12 14:32:56] 2025-10-12 18:32:56,590 [wrapper] Pilot exit status: 0
[2025-10-12 14:32:56] 2025-10-12 18:32:56,605 [wrapper] pandaids: 6840181648
[2025-10-12 14:32:56] 2025-10-12 18:32:56,650 [wrapper] cleanup supervisor_pilot 31678 30552
[2025-10-12 14:32:56] 2025-10-12 18:32:56,654 [wrapper] Test setup, not cleaning
[2025-10-12 14:32:56] 2025-10-12 18:32:56,658 [wrapper] apfmon messages muted
[2025-10-12 14:32:56] 2025-10-12 18:32:56,662 [wrapper] ==== wrapper stdout END ====
[2025-10-12 14:32:56] 2025-10-12 18:32:56,665 [wrapper] ==== wrapper stderr END ====
[2025-10-12 14:32:56]  *** Error codes and diagnostics ***
[2025-10-12 14:32:56]     "exeErrorCode": 0,
[2025-10-12 14:32:56]     "exeErrorDiag": "",
[2025-10-12 14:32:56]     "pilotErrorCode": 0,
[2025-10-12 14:32:56]     "pilotErrorDiag": "",
[2025-10-12 14:32:56]  *** Listing of results directory ***
[2025-10-12 14:32:56] total 413992
[2025-10-12 14:32:56] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 09:55 pilot3.tar.gz
[2025-10-12 14:32:56] -rwx------ 1 boincer umatlas     36292 Oct 12 10:18 runpilot2-wrapper.sh
[2025-10-12 14:32:56] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 10:18 queuedata.json
[2025-10-12 14:32:56] -rw-r--r-- 1 boincer umatlas       100 Oct 12 13:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 14:32:56] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 13:16 run_atlas
[2025-10-12 14:32:56] -rw-r--r-- 1 boincer umatlas       105 Oct 12 13:16 job.xml
[2025-10-12 14:32:56] -rw-r--r-- 2 boincer umatlas 218825766 Oct 12 13:16 EVNT.46676267._004226.pool.root.1
[2025-10-12 14:32:56] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 13:16 start_atlas.sh
[2025-10-12 14:32:56] drwxrwx--x 2 boincer umatlas      4096 Oct 12 13:16 shared
[2025-10-12 14:32:56] -rw-r--r-- 2 boincer umatlas    569675 Oct 12 13:16 input.tar.gz
[2025-10-12 14:32:56] -rw-r--r-- 1 boincer umatlas         0 Oct 12 13:16 boinc_lockfile
[2025-10-12 14:32:56] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 13:16 pandaJob.out
[2025-10-12 14:32:56] -rw------- 1 boincer umatlas    975528 Oct 12 13:16 agis_schedconf.cvmfs.json
[2025-10-12 14:32:56] -rw------- 1 boincer umatlas   1560580 Oct 12 13:16 agis_ddmendpoints.agis.ALL.json
[2025-10-12 14:32:56] drwx------ 5 boincer umatlas      4096 Oct 12 13:16 pilot3
[2025-10-12 14:32:56] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 14:30 init_data.xml
[2025-10-12 14:32:56] -rw------- 1 boincer umatlas 199108087 Oct 12 14:31 HITS.46676269._080523.pool.root.1
[2025-10-12 14:32:56] -rw------- 1 boincer umatlas        95 Oct 12 14:31 pilot_heartbeat.json
[2025-10-12 14:32:56] -rw-r--r-- 1 boincer umatlas       529 Oct 12 14:31 boinc_task_state.xml
[2025-10-12 14:32:56] -rw------- 1 boincer umatlas      1050 Oct 12 14:31 memory_monitor_summary.json
[2025-10-12 14:32:56] -rw------- 1 boincer umatlas    385675 Oct 12 14:31 log.46676269._080523.job.log.tgz.1
[2025-10-12 14:32:56] -rw------- 1 boincer umatlas      7858 Oct 12 14:32 heartbeat.json
[2025-10-12 14:32:56] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 14:32 boinc_mmap_file
[2025-10-12 14:32:56] -rw-r--r-- 1 boincer umatlas        27 Oct 12 14:32 wrapper_checkpoint.txt
[2025-10-12 14:32:56] -rw------- 1 boincer umatlas      4932 Oct 12 14:32 pilotlog.txt
[2025-10-12 14:32:56] -rw------- 1 boincer umatlas    656517 Oct 12 14:32 log.46676269._080523.job.log.1
[2025-10-12 14:32:56] -rw------- 1 boincer umatlas       357 Oct 12 14:32 output.list
[2025-10-12 14:32:56] -rw-r--r-- 1 boincer umatlas       620 Oct 12 14:32 runtime_log
[2025-10-12 14:32:56] -rw------- 1 boincer umatlas   1064960 Oct 12 14:32 result.tar.gz
[2025-10-12 14:32:56] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 14:32 runtime_log.err
[2025-10-12 14:32:56] -rw------- 1 boincer umatlas       659 Oct 12 14:32 0nJNDmJ5BS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5CkNDm6MDGwn.diag
[2025-10-12 14:32:56] -rw-r--r-- 1 boincer umatlas     22377 Oct 12 14:32 stderr.txt
[2025-10-12 14:32:56] HITS file was successfully produced:
[2025-10-12 14:32:56] -rw------- 1 boincer umatlas 199108087 Oct 12 14:31 shared/HITS.pool.root.1
[2025-10-12 14:32:56]  *** Contents of shared directory: ***
[2025-10-12 14:32:56] total 409764
[2025-10-12 14:32:56] -rw-r--r-- 2 boincer umatlas 218825766 Oct 12 13:16 ATLAS.root_0
[2025-10-12 14:32:56] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 13:16 start_atlas.sh
[2025-10-12 14:32:56] -rw-r--r-- 2 boincer umatlas    569675 Oct 12 13:16 input.tar.gz
[2025-10-12 14:32:56] -rw------- 1 boincer umatlas 199108087 Oct 12 14:31 HITS.pool.root.1
[2025-10-12 14:32:56] -rw------- 1 boincer umatlas   1064960 Oct 12 14:32 result.tar.gz
14:32:58 (26879): run_atlas exited; CPU time 48102.656722
14:32:58 (26879): called boinc_finish(0)

</stderr_txt>
]]>

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