Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
22:47:56 (4187932): wrapper (7.7.26015): starting
22:47:56 (4187932): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 22:47:56] Arguments: --nthreads 12
[2025-10-12 22:47:56] Threads: 12
[2025-10-12 22:47:56] Checking for CVMFS
[2025-10-12 22:47:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:47:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:47:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:47:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:47:56] 2.13.2.0 4131061 29 45860 151640 2 188 2426538 4096000 804 130560 0 157003 99.999 1363 557 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-12 22:47:56] CVMFS is ok
[2025-10-12 22:47:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:47:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:47:56] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-12 22:47:56] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-12 22:47:56] Further information can be found at the LHC@home message board.
[2025-10-12 22:47:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:47:56] Checking for apptainer binary...
[2025-10-12 22:47:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 22:47:56] Running /usr/bin/apptainer --version
[2025-10-12 22:47:56] apptainer version 1.4.3
[2025-10-12 22:47:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:47:56] test-run
[2025-10-12 22:47:56] apptainer works
[2025-10-12 22:47:56] Set ATHENA_PROC_NUMBER=12
[2025-10-12 22:47:56] Set ATHENA_CORE_NUMBER=12
[2025-10-12 22:47:56] Starting ATLAS job with PandaID=6840181247
[2025-10-12 22:47:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:16:22]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:16:22]  is_altstaged=None
[2025-10-12 23:16:22]  is_tar=False
[2025-10-12 23:16:22]  lfn=log.46676269._080206.job.log.tgz.1
[2025-10-12 23:16:22]  mtime=0
[2025-10-12 23:16:22]  protocol_id=None
[2025-10-12 23:16:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 23:16:22]  replicas=None
[2025-10-12 23:16:22]  scope=mc23_13p6TeV
[2025-10-12 23:16:22]  status=None
[2025-10-12 23:16:22]  status_code=0
[2025-10-12 23:16:22]  storage_token=
[2025-10-12 23:16:22]  surl=/var/lib/boinc-client/slots/4/PanDA_Pilot-6840181247/log.46676269._080206.job.log.tgz.1
[2025-10-12 23:16:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/64/92/log.46676269._080206.job.log.tgz.1
[2025-10-12 23:16:22]  workdir=None
[2025-10-12 23:16:22] ]
[2025-10-12 23:16:22] 2025-10-12 23:15:46,753 | INFO     | transferring file log.46676269._080206.job.log.tgz.1 from /var/lib/boinc-client/slots/4/PanDA_Pilot-6840181247/log.46676269._080206.job.log.tgz.1 to /var/lib/boinc
[2025-10-12 23:16:22] 2025-10-12 23:15:46,753 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/4/PanDA_Pilot-6840181247/log.46676269._080206.job.log.tgz.1 /var/lib/boinc-client/slots/4/log.466762
[2025-10-12 23:16:22] 2025-10-12 23:15:46,758 | INFO     | adding to output.list: log.46676269._080206.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/64/92/log.46676269._080206.job.log.tg
[2025-10-12 23:16:22] 2025-10-12 23:15:46,758 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 23:16:22] 2025-10-12 23:15:46,758 | INFO     | summary of transferred files:
[2025-10-12 23:16:22] 2025-10-12 23:15:46,758 | INFO     |  -- lfn=log.46676269._080206.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 23:16:22] 2025-10-12 23:15:46,758 | INFO     | stage-out finished correctly
[2025-10-12 23:16:22] 2025-10-12 23:15:47,182 | INFO     | time since job start (1666s) is within the limit (172800.0s)
[2025-10-12 23:16:22] 2025-10-12 23:15:48,841 | INFO     | monitor loop #131: job 0:6840181247 is in state 'finished'
[2025-10-12 23:16:22] 2025-10-12 23:15:48,842 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 23:16:22] 2025-10-12 23:15:49,187 | INFO     | time since job start (1668s) is within the limit (172800.0s)
[2025-10-12 23:16:22] 2025-10-12 23:15:49,661 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 23:16:22] 2025-10-12 23:15:49,945 | INFO     | job 6840181247 has state=finished
[2025-10-12 23:16:22] 2025-10-12 23:15:49,945 | INFO     | preparing for final server update for job 6840181247 in state='finished'
[2025-10-12 23:16:22] 2025-10-12 23:15:49,945 | INFO     | this job has now completed (state=finished)
[2025-10-12 23:16:22] 2025-10-12 23:15:49,945 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 23:16:22] 2025-10-12 23:15:49,946 | INFO     | log transfer has been attempted: DONE
[2025-10-12 23:16:22] 2025-10-12 23:15:49,946 | INFO     | job 6840181247 has finished - writing final server update
[2025-10-12 23:16:22] 2025-10-12 23:15:49,946 | INFO     | total number of processed events: 400 (read)
[2025-10-12 23:16:22] 2025-10-12 23:15:49,947 | INFO     | executing command: lscpu
[2025-10-12 23:16:22] 2025-10-12 23:15:49,952 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 23:16:22] 2025-10-12 23:15:50,723 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 23:16:22] 2025-10-12 23:15:50,723 | INFO     | found 32 cores (32 cores per socket, 1 socket) , CPU MHz: 4299.979999999998
[2025-10-12 23:16:22] 2025-10-12 23:15:50,724 | INFO     | using path: /var/lib/boinc-client/slots/4/PanDA_Pilot-6840181247/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:16:22] 2025-10-12 23:15:50,724 | INFO     | extracted standard info from prmon json
[2025-10-12 23:16:22] 2025-10-12 23:15:50,724 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:16:22] 2025-10-12 23:15:50,724 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:16:22] 2025-10-12 23:15:50,724 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:16:22] 2025-10-12 23:15:50,724 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | sum of square deviations: 2474465.0
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | sum of deviations: 426612802.5
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | mean x: 1760310180.5
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | mean y: 2860836.95
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | -- intersect: -303485311100.1701
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | intersect: -303485311100.1701
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | chi2: 0.027882209499643863
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | -- intersect: -303485311100.1701
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | current memory leak: 172.41 B/s (using 20 data points, chi2=0.03)
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | could have reported an average CPU frequency of 4299 MHz (4 samples)
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | ..............................
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | . Timing measurements:
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | . get job = 0 s
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | . initial setup = 2 s
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | . payload setup = 1 s
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | . stage-in = 0 s
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | . payload execution = 1648 s
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | . stage-out = 0 s
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | . log creation = 0 s
[2025-10-12 23:16:22] 2025-10-12 23:15:50,725 | INFO     | ..............................
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | 
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | job summary report
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | --------------------------------------------------
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | PanDA job id: 6840181247
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | task id: 46676269
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | errors: (none)
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | pilot state: finished 
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | transexitcode: 0
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | exeerrorcode: 0
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | exeerrordiag: 
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | exitcode: 0
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | exitmsg: OK
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | cpuconsumptiontime: 15444 s
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | nevents: 400
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | neventsw: 0
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | pid: 4507
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | pgrp: 4507
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | corecount: 12
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | event service: False
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | sizes: {0: 2348812, 1: 2349074, 11: 2349102, 1653: 2382992, 1656: 2382992, 1657: 2383186}
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | --------------------------------------------------
[2025-10-12 23:16:22] 2025-10-12 23:15:50,743 | INFO     | 
[2025-10-12 23:16:22] 2025-10-12 23:15:50,744 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4
[2025-10-12 23:16:22] 2025-10-12 23:15:50,748 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | job 6840181247 has completed (purged errors)
[2025-10-12 23:16:22] 2025-10-12 23:15:50,749 | INFO     | overall cleanup function is called
[2025-10-12 23:16:22] 2025-10-12 23:15:51,755 | INFO     | --- collectZombieJob: --- 10, [4507]
[2025-10-12 23:16:22] 2025-10-12 23:15:51,755 | INFO     | zombie collector waiting for pid 4507
[2025-10-12 23:16:22] 2025-10-12 23:15:51,755 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:16:22] 2025-10-12 23:15:51,755 | INFO     | collected zombie processes
[2025-10-12 23:16:22] 2025-10-12 23:15:51,755 | INFO     | will attempt to kill all subprocesses of pid=4507
[2025-10-12 23:16:22] 2025-10-12 23:15:51,767 | INFO     | process IDs to be killed: [4507] (in reverse order)
[2025-10-12 23:16:22] 2025-10-12 23:15:51,776 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:16:22] 2025-10-12 23:15:51,776 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:16:22] 2025-10-12 23:15:51,777 | INFO     | did not find any defunct processes belonging to 4507
[2025-10-12 23:16:22] 2025-10-12 23:15:51,777 | INFO     | did not find any defunct processes belonging to 4507
[2025-10-12 23:16:22] 2025-10-12 23:15:51,777 | INFO     | ready for new job
[2025-10-12 23:16:22] 2025-10-12 23:15:51,777 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:16:22] 2025-10-12 23:15:51,778 | INFO     | ***************************************
[2025-10-12 23:16:22] 2025-10-12 23:15:51,778 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:16:22] 2025-10-12 23:15:51,778 | INFO     | ***************************************
[2025-10-12 23:16:22] 2025-10-12 23:15:51,778 | INFO     | 
[2025-10-12 23:16:22] 2025-10-12 23:15:51,778 | INFO     | pilot is running in a VM
[2025-10-12 23:16:22] 2025-10-12 23:15:51,778 | INFO     | architecture information:
[2025-10-12 23:16:22] 2025-10-12 23:15:51,778 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:16:22] 2025-10-12 23:15:51,780 | INFO     | cat /etc/os-release:
[2025-10-12 23:16:22] NAME="CentOS Linux"
[2025-10-12 23:16:22] VERSION="7 (Core)"
[2025-10-12 23:16:22] ID="centos"
[2025-10-12 23:16:22] ID_LIKE="rhel fedora"
[2025-10-12 23:16:22] VERSION_ID="7"
[2025-10-12 23:16:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:16:22] ANSI_COLOR="0;31"
[2025-10-12 23:16:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:16:22] HOME_URL="https://www.centos.org/"
[2025-10-12 23:16:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:16:22] 
[2025-10-12 23:16:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:16:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:16:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:16:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:16:22] 
[2025-10-12 23:16:22] 2025-10-12 23:15:51,780 | INFO     | ***************************************
[2025-10-12 23:16:22] 2025-10-12 23:15:52,284 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/4
[2025-10-12 23:16:22] 2025-10-12 23:15:52,288 | INFO     | sufficient remaining disk space (25834815488 B)
[2025-10-12 23:16:22] 2025-10-12 23:15:52,288 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:16:22] 2025-10-12 23:15:52,288 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:16:22] 2025-10-12 23:15:52,288 | INFO     | update_server=False
[2025-10-12 23:16:22] 2025-10-12 23:15:52,289 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:16:22] 2025-10-12 23:15:52,289 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:16:22] 2025-10-12 23:15:52,289 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:16:22] 2025-10-12 23:15:52,289 | INFO     | all payload control threads have been joined
[2025-10-12 23:16:22] 2025-10-12 23:15:52,350 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:16:22] 2025-10-12 23:15:52,350 | INFO     | aborting loop
[2025-10-12 23:16:22] 2025-10-12 23:15:53,082 | INFO     | all data control threads have been joined
[2025-10-12 23:16:22] 2025-10-12 23:15:53,294 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:16:22] 2025-10-12 23:15:53,294 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:16:22] 2025-10-12 23:15:53,295 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:16:22] 2025-10-12 23:15:53,295 | INFO     | [payload] control thread has finished
[2025-10-12 23:16:22] 2025-10-12 23:15:53,355 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:16:22] 2025-10-12 23:15:53,404 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:16:22] 2025-10-12 23:15:53,717 | INFO     | all job control threads have been joined
[2025-10-12 23:16:22] 2025-10-12 23:15:54,072 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:16:22] 2025-10-12 23:15:54,087 | INFO     | [data] control thread has finished
[2025-10-12 23:16:22] 2025-10-12 23:15:54,294 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:16:22] 2025-10-12 23:15:54,362 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:16:22] 2025-10-12 23:15:54,480 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:16:22] 2025-10-12 23:15:54,658 | INFO     | [job] validate thread has finished
[2025-10-12 23:16:22] 2025-10-12 23:15:54,706 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:16:22] 2025-10-12 23:15:54,720 | INFO     | [job] control thread has finished
[2025-10-12 23:16:22] 2025-10-12 23:15:54,728 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:16:22] 2025-10-12 23:15:55,683 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:16:22] 2025-10-12 23:15:59,690 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:16:22] 2025-10-12 23:16:03,526 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:16:22] 2025-10-12 23:16:05,312 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123155222255424)>', '<ExcThread(monitor, started 123154856912640)>']
[2025-10-12 23:16:22] 2025-10-12 23:16:10,332 | INFO     | all workflow threads have been joined
[2025-10-12 23:16:22] 2025-10-12 23:16:10,332 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:16:22] 2025-10-12 23:16:10,332 | INFO     | traces error code: 0
[2025-10-12 23:16:22] 2025-10-12 23:16:10,332 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:16:22] 2025-10-12 23:16:22,278 | INFO     | PID=4191781 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:16:22] 2025-10-12 23:16:22,282 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:16:22] 2025-10-12 23:16:22,282 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:16:22] 2025-10-12 23:16:22,282 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:16:22] 2025-10-12 23:16:22,282 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:16:22] 2025-10-12 23:16:22,282 | INFO     | [monitor] control thread has ended
[2025-10-12 23:16:22] 2025-10-12 23:16:22,345 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:16:22] 2025-10-12 23:16:22,347 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:16:22] 2025-10-12 23:16:22,348 [wrapper] pilotpid: 4191781
[2025-10-12 23:16:22] 2025-10-12 23:16:22,350 [wrapper] Pilot exit status: 0
[2025-10-12 23:16:22] 2025-10-12 23:16:22,355 [wrapper] pandaids: 6840181247
[2025-10-12 23:16:22] 2025-10-12 23:16:22,376 [wrapper] cleanup supervisor_pilot   11596 4191782
[2025-10-12 23:16:22] 2025-10-12 23:16:22,378 [wrapper] Test setup, not cleaning
[2025-10-12 23:16:22] 2025-10-12 23:16:22,379 [wrapper] apfmon messages muted
[2025-10-12 23:16:22] 2025-10-12 23:16:22,380 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:16:22] 2025-10-12 23:16:22,382 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:16:22]  *** Error codes and diagnostics ***
[2025-10-12 23:16:22]     "exeErrorCode": 0,
[2025-10-12 23:16:22]     "exeErrorDiag": "",
[2025-10-12 23:16:22]     "pilotErrorCode": 0,
[2025-10-12 23:16:22]     "pilotErrorDiag": "",
[2025-10-12 23:16:22]  *** Listing of results directory ***
[2025-10-12 23:16:22] total 411740
[2025-10-12 23:16:22] -rw-r--r-- 1 boinc boinc    557409 Oct 12 13:55 pilot3.tar.gz
[2025-10-12 23:16:22] -rwx------ 1 boinc boinc     36292 Oct 12 14:03 runpilot2-wrapper.sh
[2025-10-12 23:16:22] -rw-r--r-- 1 boinc boinc      5112 Oct 12 14:03 queuedata.json
[2025-10-12 23:16:22] -rw-r--r-- 1 boinc boinc       100 Oct 12 22:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:16:22] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 22:47 run_atlas
[2025-10-12 23:16:22] -rw-r--r-- 1 boinc boinc       105 Oct 12 22:47 job.xml
[2025-10-12 23:16:22] -rw-r--r-- 2 boinc boinc     15120 Oct 12 22:47 start_atlas.sh
[2025-10-12 23:16:22] drwxrwx--x 2 boinc boinc      4096 Oct 12 22:47 shared
[2025-10-12 23:16:22] -rw-r--r-- 2 boinc boinc    569680 Oct 12 22:47 input.tar.gz
[2025-10-12 23:16:22] -rw-r--r-- 1 boinc boinc      6938 Oct 12 22:47 init_data.xml
[2025-10-12 23:16:22] -rw-r--r-- 2 boinc boinc 221534884 Oct 12 22:47 EVNT.46676267._001034.pool.root.1
[2025-10-12 23:16:22] -rw-r--r-- 1 boinc boinc         0 Oct 12 22:47 boinc_lockfile
[2025-10-12 23:16:22] -rw-r--r-- 1 boinc boinc      2549 Oct 12 22:47 pandaJob.out
[2025-10-12 23:16:22] -rw------- 1 boinc boinc    975603 Oct 12 22:47 agis_schedconf.cvmfs.json
[2025-10-12 23:16:22] -rw------- 1 boinc boinc   1560580 Oct 12 22:48 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:16:22] drwx------ 5 boinc boinc      4096 Oct 12 22:48 pilot3
[2025-10-12 23:16:22] -rw------- 1 boinc boinc 194917723 Oct 12 23:15 HITS.46676269._080206.pool.root.1
[2025-10-12 23:16:22] -rw-r--r-- 1 boinc boinc       529 Oct 12 23:15 boinc_task_state.xml
[2025-10-12 23:16:22] -rw------- 1 boinc boinc      1019 Oct 12 23:15 memory_monitor_summary.json
[2025-10-12 23:16:22] -rw------- 1 boinc boinc    346760 Oct 12 23:15 log.46676269._080206.job.log.tgz.1
[2025-10-12 23:16:22] -rw------- 1 boinc boinc      7736 Oct 12 23:15 heartbeat.json
[2025-10-12 23:16:22] -rw-r--r-- 1 boinc boinc        27 Oct 12 23:16 wrapper_checkpoint.txt
[2025-10-12 23:16:22] -rw-r--r-- 1 boinc boinc      8192 Oct 12 23:16 boinc_mmap_file
[2025-10-12 23:16:22] -rw------- 1 boinc boinc       747 Oct 12 23:16 pilotlog.txt
[2025-10-12 23:16:22] -rw------- 1 boinc boinc        95 Oct 12 23:16 pilot_heartbeat.json
[2025-10-12 23:16:22] -rw------- 1 boinc boinc    286403 Oct 12 23:16 log.46676269._080206.job.log.1
[2025-10-12 23:16:22] -rw------- 1 boinc boinc       357 Oct 12 23:16 output.list
[2025-10-12 23:16:22] -rw-r--r-- 1 boinc boinc       620 Oct 12 23:16 runtime_log
[2025-10-12 23:16:22] -rw------- 1 boinc boinc    655360 Oct 12 23:16 result.tar.gz
[2025-10-12 23:16:22] -rw-r--r-- 1 boinc boinc      8762 Oct 12 23:16 runtime_log.err
[2025-10-12 23:16:22] -rw------- 1 boinc boinc       639 Oct 12 23:16 FPrMDmSqBS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmj2TMDmapETtn.diag
[2025-10-12 23:16:22] -rw-r--r-- 1 boinc boinc     21592 Oct 12 23:16 stderr.txt
[2025-10-12 23:16:22] HITS file was successfully produced:
[2025-10-12 23:16:22] -rw------- 1 boinc boinc 194917723 Oct 12 23:15 shared/HITS.pool.root.1
[2025-10-12 23:16:22]  *** Contents of shared directory: ***
[2025-10-12 23:16:22] total 407920
[2025-10-12 23:16:22] -rw-r--r-- 2 boinc boinc     15120 Oct 12 22:47 start_atlas.sh
[2025-10-12 23:16:22] -rw-r--r-- 2 boinc boinc    569680 Oct 12 22:47 input.tar.gz
[2025-10-12 23:16:22] -rw-r--r-- 2 boinc boinc 221534884 Oct 12 22:47 ATLAS.root_0
[2025-10-12 23:16:22] -rw------- 1 boinc boinc 194917723 Oct 12 23:15 HITS.pool.root.1
[2025-10-12 23:16:22] -rw------- 1 boinc boinc    655360 Oct 12 23:16 result.tar.gz
23:16:24 (4187932): run_atlas exited; CPU time 15448.178790
23:16:24 (4187932): called boinc_finish(0)

</stderr_txt>
]]>

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