Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:57:07 (1904919): wrapper (7.7.26015): starting
22:57:07 (1904919): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 22:57:07] Arguments: --nthreads 12
[2025-10-12 22:57:07] Threads: 12
[2025-10-12 22:57:07] Checking for CVMFS
[2025-10-12 22:57:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:57:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:57:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:57:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:57:08] 2.13.2.0 8715 29557 234220 151636 1 188 40381890 46080001 5643 130560 0 200014003 99.890 56051054 21598 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-12 22:57:08] CVMFS is ok
[2025-10-12 22:57:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:57:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:57:08] Further information can be found at the LHC@home message board.
[2025-10-12 22:57:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:57:08] Checking for apptainer binary...
[2025-10-12 22:57:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 22:57:08] Running /usr/bin/apptainer --version
[2025-10-12 22:57:08] apptainer version 1.4.2-1.el9
[2025-10-12 22:57:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:57:08] mff2104.farm.particle.cz
[2025-10-12 22:57:08] apptainer works
[2025-10-12 22:57:08] Set ATHENA_PROC_NUMBER=12
[2025-10-12 22:57:08] Set ATHENA_CORE_NUMBER=12
[2025-10-12 22:57:08] Starting ATLAS job with PandaID=6839866329
[2025-10-12 22:57:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 23:55:31]  *** The last 200 lines of the pilot log: ***
[2025-10-12 23:55:31] 2025-10-12 21:54:30,770 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 23:55:31] 2025-10-12 21:54:31,420 | INFO     | time since job start (3431s) is within the limit (172800.0s)
[2025-10-12 23:55:31] 2025-10-12 21:54:32,561 | INFO     | job 6839866329 has state=finished
[2025-10-12 23:55:31] 2025-10-12 21:54:32,562 | INFO     | preparing for final server update for job 6839866329 in state='finished'
[2025-10-12 23:55:31] 2025-10-12 21:54:32,563 | INFO     | this job has now completed (state=finished)
[2025-10-12 23:55:31] 2025-10-12 21:54:32,563 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 23:55:31] 2025-10-12 21:54:32,563 | INFO     | log transfer has been attempted: DONE
[2025-10-12 23:55:31] 2025-10-12 21:54:32,563 | INFO     | job 6839866329 has finished - writing final server update
[2025-10-12 23:55:31] 2025-10-12 21:54:32,563 | INFO     | total number of processed events: 400 (read)
[2025-10-12 23:55:31] 2025-10-12 21:54:32,564 | INFO     | executing command: lscpu
[2025-10-12 23:55:31] 2025-10-12 21:54:32,648 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 23:55:31] 2025-10-12 21:54:32,721 | WARNING  | process 1929779 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 23:55:31] 2025-10-12 21:54:32,722 | INFO     | using path: /scratch/.boinc/slots/5/PanDA_Pilot-6839866329/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:55:31] 2025-10-12 21:54:32,723 | INFO     | using path: /scratch/.boinc/slots/5/PanDA_Pilot-6839866329/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:55:31] 2025-10-12 21:54:32,723 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 23:55:31] 2025-10-12 21:54:32,723 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 23:55:31] 2025-10-12 21:54:32,724 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4001043 B
[2025-10-12 23:55:31] 2025-10-12 21:54:32,724 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16024 B
[2025-10-12 23:55:31] 2025-10-12 21:54:32,724 | INFO     | executing command: df -mP /scratch/.boinc/slots/5
[2025-10-12 23:55:31] 2025-10-12 21:54:33,424 | INFO     | time since job start (3433s) is within the limit (172800.0s)
[2025-10-12 23:55:31] 2025-10-12 21:54:35,429 | INFO     | time since job start (3435s) is within the limit (172800.0s)
[2025-10-12 23:55:31] 2025-10-12 21:54:36,857 | INFO     | PID=1910956 has CPU usage=11.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 23:55:31] 2025-10-12 21:54:36,858 | INFO     | .. there are 8 such processes running
[2025-10-12 23:55:31] 2025-10-12 21:54:37,859 | INFO     | time since job start (3437s) is within the limit (172800.0s)
[2025-10-12 23:55:31] 2025-10-12 21:54:37,953 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 23:55:31] 2025-10-12 21:54:37,975 | INFO     | sufficient remaining disk space (1681132617728 B)
[2025-10-12 23:55:31] 2025-10-12 21:54:37,975 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 23:55:31] 2025-10-12 21:54:37,977 | INFO     | size of work directory /scratch/.boinc/slots/5/PanDA_Pilot-6839866329: 4290735 B (within 2537553920 B limit)
[2025-10-12 23:55:31] 2025-10-12 21:54:37,978 | INFO     | pfn file=/scratch/.boinc/slots/5/PanDA_Pilot-6839866329/HITS.46676269._076047.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 23:55:31] 2025-10-12 21:54:37,978 | INFO     | total size of present files: 0 B (workdir size: 4290735 B)
[2025-10-12 23:55:31] 2025-10-12 21:54:37,978 | INFO     | output file size check: skipping output file /scratch/.boinc/slots/5/PanDA_Pilot-6839866329/HITS.46676269._076047.pool.root.1 since it does not exist
[2025-10-12 23:55:31] 2025-10-12 21:54:37,979 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2769.15775
[2025-10-12 23:55:31] 2025-10-12 21:54:38,002 | INFO     | using path: /scratch/.boinc/slots/5/PanDA_Pilot-6839866329/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 23:55:31] 2025-10-12 21:54:38,003 | INFO     | extracted standard info from prmon json
[2025-10-12 23:55:31] 2025-10-12 21:54:38,003 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 23:55:31] 2025-10-12 21:54:38,003 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 23:55:31] 2025-10-12 21:54:38,004 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 23:55:31] 2025-10-12 21:54:38,004 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 23:55:31] 2025-10-12 21:54:38,005 | INFO     | fitting pss+swap vs Time
[2025-10-12 23:55:31] 2025-10-12 21:54:38,006 | INFO     | sum of square deviations: 36465800.0
[2025-10-12 23:55:31] 2025-10-12 21:54:38,006 | INFO     | sum of deviations: 818470184.0
[2025-10-12 23:55:31] 2025-10-12 21:54:38,006 | INFO     | mean x: 1760304438.0
[2025-10-12 23:55:31] 2025-10-12 21:54:38,006 | INFO     | mean y: 2681967.93877551
[2025-10-12 23:55:31] 2025-10-12 21:54:38,006 | INFO     | -- intersect: -39507124405.86563
[2025-10-12 23:55:31] 2025-10-12 21:54:38,007 | INFO     | intersect: -39507124405.86563
[2025-10-12 23:55:31] 2025-10-12 21:54:38,007 | INFO     | chi2: 0.03163180263101413
[2025-10-12 23:55:31] 2025-10-12 21:54:38,007 | INFO     | -- intersect: -39507124405.86563
[2025-10-12 23:55:31] 2025-10-12 21:54:38,007 | INFO     | current memory leak: 22.44 B/s (using 49 data points, chi2=0.03)
[2025-10-12 23:55:31] 2025-10-12 21:54:38,008 | INFO     | could have reported an average CPU frequency of 2749 MHz (5 samples)
[2025-10-12 23:55:31] 2025-10-12 21:54:38,008 | INFO     | ..............................
[2025-10-12 23:55:31] 2025-10-12 21:54:38,008 | INFO     | . Timing measurements:
[2025-10-12 23:55:31] 2025-10-12 21:54:38,008 | INFO     | . get job = 0 s
[2025-10-12 23:55:31] 2025-10-12 21:54:38,008 | INFO     | . initial setup = 1 s
[2025-10-12 23:55:31] 2025-10-12 21:54:38,009 | INFO     | . payload setup = 6 s
[2025-10-12 23:55:31] 2025-10-12 21:54:38,009 | INFO     | . stage-in = 0 s
[2025-10-12 23:55:31] 2025-10-12 21:54:38,009 | INFO     | . payload execution = 3401 s
[2025-10-12 23:55:31] 2025-10-12 21:54:38,009 | INFO     | . stage-out = 0 s
[2025-10-12 23:55:31] 2025-10-12 21:54:38,009 | INFO     | . log creation = 0 s
[2025-10-12 23:55:31] 2025-10-12 21:54:38,009 | INFO     | ..............................
[2025-10-12 23:55:31] 2025-10-12 21:54:38,422 | INFO     | 
[2025-10-12 23:55:31] 2025-10-12 21:54:38,422 | INFO     | job summary report
[2025-10-12 23:55:31] 2025-10-12 21:54:38,422 | INFO     | --------------------------------------------------
[2025-10-12 23:55:31] 2025-10-12 21:54:38,422 | INFO     | PanDA job id: 6839866329
[2025-10-12 23:55:31] 2025-10-12 21:54:38,422 | INFO     | task id: 46676269
[2025-10-12 23:55:31] 2025-10-12 21:54:38,422 | INFO     | errors: (none)
[2025-10-12 23:55:31] 2025-10-12 21:54:38,422 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 23:55:31] 2025-10-12 21:54:38,422 | INFO     | pilot state: finished 
[2025-10-12 23:55:31] 2025-10-12 21:54:38,423 | INFO     | transexitcode: 0
[2025-10-12 23:55:31] 2025-10-12 21:54:38,423 | INFO     | exeerrorcode: 0
[2025-10-12 23:55:31] 2025-10-12 21:54:38,423 | INFO     | exeerrordiag: 
[2025-10-12 23:55:31] 2025-10-12 21:54:38,423 | INFO     | exitcode: 0
[2025-10-12 23:55:31] 2025-10-12 21:54:38,423 | INFO     | exitmsg: OK
[2025-10-12 23:55:31] 2025-10-12 21:54:38,423 | INFO     | cpuconsumptiontime: 34994 s
[2025-10-12 23:55:31] 2025-10-12 21:54:38,423 | INFO     | nevents: 400
[2025-10-12 23:55:31] 2025-10-12 21:54:38,423 | INFO     | neventsw: 0
[2025-10-12 23:55:31] 2025-10-12 21:54:38,424 | INFO     | pid: 1929779
[2025-10-12 23:55:31] 2025-10-12 21:54:38,424 | INFO     | pgrp: 1929779
[2025-10-12 23:55:31] 2025-10-12 21:54:38,424 | INFO     | corecount: 12
[2025-10-12 23:55:31] 2025-10-12 21:54:38,424 | INFO     | event service: False
[2025-10-12 23:55:31] 2025-10-12 21:54:38,424 | INFO     | sizes: {0: 2348687, 1: 2348886, 6: 2349148, 11: 2349176, 3412: 2374865, 3413: 2383865, 3414: 2384049, 3421: 2384303}
[2025-10-12 23:55:31] 2025-10-12 21:54:38,424 | INFO     | --------------------------------------------------
[2025-10-12 23:55:31] 2025-10-12 21:54:38,424 | INFO     | 
[2025-10-12 23:55:31] 2025-10-12 21:54:38,424 | INFO     | executing command: ls -lF /scratch/.boinc/slots/5
[2025-10-12 23:55:31] 2025-10-12 21:54:38,435 | INFO     | number of running child processes to parent process 1929779: 1
[2025-10-12 23:55:31] 2025-10-12 21:54:38,436 | INFO     | maximum number of monitored processes: 6
[2025-10-12 23:55:31] 2025-10-12 21:54:38,436 | INFO     | aborting job monitoring since job object (job id=6839866329) has expired
[2025-10-12 23:55:31] 2025-10-12 21:54:38,454 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 23:55:31] 2025-10-12 21:54:38,454 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 23:55:31] 2025-10-12 21:54:38,454 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 23:55:31] 2025-10-12 21:54:38,454 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 23:55:31] 2025-10-12 21:54:38,454 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 23:55:31] 2025-10-12 21:54:38,454 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 23:55:31] 2025-10-12 21:54:38,454 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 23:55:31] 2025-10-12 21:54:38,454 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 23:55:31] 2025-10-12 21:54:38,455 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 23:55:31] 2025-10-12 21:54:38,455 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 23:55:31] 2025-10-12 21:54:38,455 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 23:55:31] 2025-10-12 21:54:38,455 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 23:55:31] 2025-10-12 21:54:38,455 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 23:55:31] 2025-10-12 21:54:38,455 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 23:55:31] 2025-10-12 21:54:38,455 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 23:55:31] 2025-10-12 21:54:38,455 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 23:55:31] 2025-10-12 21:54:38,455 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 23:55:31] 2025-10-12 21:54:38,455 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 23:55:31] 2025-10-12 21:54:38,455 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 23:55:31] 2025-10-12 21:54:38,456 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 23:55:31] 2025-10-12 21:54:38,456 | INFO     | job 6839866329 has completed (purged errors)
[2025-10-12 23:55:31] 2025-10-12 21:54:38,456 | INFO     | overall cleanup function is called
[2025-10-12 23:55:31] 2025-10-12 21:54:39,466 | INFO     | --- collectZombieJob: --- 10, [1929779]
[2025-10-12 23:55:31] 2025-10-12 21:54:39,466 | INFO     | zombie collector waiting for pid 1929779
[2025-10-12 23:55:31] 2025-10-12 21:54:39,466 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 23:55:31] 2025-10-12 21:54:39,466 | INFO     | collected zombie processes
[2025-10-12 23:55:31] 2025-10-12 21:54:39,466 | INFO     | will attempt to kill all subprocesses of pid=1929779
[2025-10-12 23:55:31] 2025-10-12 21:54:39,803 | INFO     | process IDs to be killed: [1929779] (in reverse order)
[2025-10-12 23:55:31] 2025-10-12 21:54:39,915 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 23:55:31] 2025-10-12 21:54:39,916 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 23:55:31] 2025-10-12 21:54:39,928 | INFO     | did not find any defunct processes belonging to 1929779
[2025-10-12 23:55:31] 2025-10-12 21:54:39,938 | INFO     | did not find any defunct processes belonging to 1929779
[2025-10-12 23:55:31] 2025-10-12 21:54:39,939 | INFO     | ready for new job
[2025-10-12 23:55:31] 2025-10-12 21:54:39,939 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 23:55:31] 2025-10-12 21:54:39,987 | INFO     | ***************************************
[2025-10-12 23:55:31] 2025-10-12 21:54:39,987 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 23:55:31] 2025-10-12 21:54:39,987 | INFO     | ***************************************
[2025-10-12 23:55:31] 2025-10-12 21:54:39,987 | INFO     | 
[2025-10-12 23:55:31] 2025-10-12 21:54:39,994 | INFO     | architecture information:
[2025-10-12 23:55:31] 2025-10-12 21:54:39,994 | INFO     | executing command: cat /etc/os-release
[2025-10-12 23:55:31] 2025-10-12 21:54:40,015 | INFO     | cat /etc/os-release:
[2025-10-12 23:55:31] NAME="CentOS Linux"
[2025-10-12 23:55:31] VERSION="7 (Core)"
[2025-10-12 23:55:31] ID="centos"
[2025-10-12 23:55:31] ID_LIKE="rhel fedora"
[2025-10-12 23:55:31] VERSION_ID="7"
[2025-10-12 23:55:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 23:55:31] ANSI_COLOR="0;31"
[2025-10-12 23:55:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 23:55:31] HOME_URL="https://www.centos.org/"
[2025-10-12 23:55:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 23:55:31] 
[2025-10-12 23:55:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 23:55:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 23:55:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 23:55:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 23:55:31] 
[2025-10-12 23:55:31] 2025-10-12 21:54:40,016 | INFO     | ***************************************
[2025-10-12 23:55:31] 2025-10-12 21:54:40,519 | INFO     | executing command: df -mP /scratch/.boinc/slots/5
[2025-10-12 23:55:31] 2025-10-12 21:54:40,545 | INFO     | sufficient remaining disk space (1681135763456 B)
[2025-10-12 23:55:31] 2025-10-12 21:54:40,545 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 23:55:31] 2025-10-12 21:54:40,545 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 23:55:31] 2025-10-12 21:54:40,545 | INFO     | update_server=False
[2025-10-12 23:55:31] 2025-10-12 21:54:40,545 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 23:55:31] 2025-10-12 21:54:40,637 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 23:55:31] 2025-10-12 21:54:40,939 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 23:55:31] 2025-10-12 21:54:40,939 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 23:55:31] 2025-10-12 21:54:40,939 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:55:31] 2025-10-12 21:54:40,940 | INFO     | will abort loop
[2025-10-12 23:55:31] 2025-10-12 21:54:41,149 | INFO     | all payload control threads have been joined
[2025-10-12 23:55:31] 2025-10-12 21:54:41,368 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 23:55:31] 2025-10-12 21:54:41,551 | INFO     | [job] retrieve thread has finished
[2025-10-12 23:55:31] 2025-10-12 21:54:41,632 | INFO     | all data control threads have been joined
[2025-10-12 23:55:31] 2025-10-12 21:54:41,661 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 23:55:31] 2025-10-12 21:54:41,745 | INFO     | [payload] failed_post thread has finished
[2025-10-12 23:55:31] 2025-10-12 21:54:41,945 | INFO     | [job] job monitor thread has finished
[2025-10-12 23:55:31] 2025-10-12 21:54:42,155 | INFO     | [payload] control thread has finished
[2025-10-12 23:55:31] 2025-10-12 21:54:42,170 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 23:55:31] 2025-10-12 21:54:42,182 | INFO     | all job control threads have been joined
[2025-10-12 23:55:31] 2025-10-12 21:54:42,510 | INFO     | [job] validate thread has finished
[2025-10-12 23:55:31] 2025-10-12 21:54:42,637 | INFO     | [data] copytool_in thread has finished
[2025-10-12 23:55:31] 2025-10-12 21:54:42,638 | INFO     | [data] control thread has finished
[2025-10-12 23:55:31] 2025-10-12 21:54:42,642 | INFO     | [data] copytool_out thread has finished
[2025-10-12 23:55:31] 2025-10-12 21:54:42,839 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 23:55:31] 2025-10-12 21:54:43,067 | INFO     | [payload] validate_post thread has finished
[2025-10-12 23:55:31] 2025-10-12 21:54:43,112 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 23:55:31] 2025-10-12 21:54:43,188 | INFO     | [job] control thread has finished
[2025-10-12 23:55:31] 2025-10-12 21:54:44,118 | INFO     | [job] queue monitor thread has finished
[2025-10-12 23:55:31] 2025-10-12 21:54:45,373 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 23:55:31] 2025-10-12 21:54:50,825 | INFO     | job.realtimelogging is not enabled
[2025-10-12 23:55:31] 2025-10-12 21:54:51,830 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 23:55:31] 2025-10-12 21:55:11,353 | INFO     | PID=1910956 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 23:55:31] 2025-10-12 21:55:11,353 | INFO     | .. there are 8 such processes running
[2025-10-12 23:55:31] 2025-10-12 21:55:11,353 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 23:55:31] 2025-10-12 21:55:11,353 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 23:55:31] 2025-10-12 21:55:11,354 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 23:55:31] 2025-10-12 21:55:24,917 | INFO     | [monitor] cgroup control has ended
[2025-10-12 23:55:31] 2025-10-12 21:55:26,315 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140058122737472)>', '<ExcThread(monitor, started 140057759422208)>']
[2025-10-12 23:55:31] 2025-10-12 21:55:26,417 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 23:55:31] 2025-10-12 21:55:26,417 | INFO     | [monitor] control thread has ended
[2025-10-12 23:55:31] 2025-10-12 21:55:31,341 | INFO     | all workflow threads have been joined
[2025-10-12 23:55:31] 2025-10-12 21:55:31,342 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 23:55:31] 2025-10-12 21:55:31,342 | INFO     | traces error code: 0
[2025-10-12 23:55:31] 2025-10-12 21:55:31,342 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 23:55:31] 2025-10-12 21:55:31,456 [wrapper] ==== pilot stdout END ====
[2025-10-12 23:55:31] 2025-10-12 21:55:31,460 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 23:55:31] 2025-10-12 21:55:31,464 [wrapper] pilotpid: 1910956
[2025-10-12 23:55:31] 2025-10-12 21:55:31,468 [wrapper] Pilot exit status: 0
[2025-10-12 23:55:31] 2025-10-12 21:55:31,481 [wrapper] pandaids: 6839866329
[2025-10-12 23:55:31] 2025-10-12 21:55:31,563 [wrapper] cleanup supervisor_pilot 2074793 1910957
[2025-10-12 23:55:31] 2025-10-12 21:55:31,568 [wrapper] Test setup, not cleaning
[2025-10-12 23:55:31] 2025-10-12 21:55:31,573 [wrapper] apfmon messages muted
[2025-10-12 23:55:31] 2025-10-12 21:55:31,577 [wrapper] ==== wrapper stdout END ====
[2025-10-12 23:55:31] 2025-10-12 21:55:31,581 [wrapper] ==== wrapper stderr END ====
[2025-10-12 23:55:31]  *** Error codes and diagnostics ***
[2025-10-12 23:55:31]     "exeErrorCode": 0,
[2025-10-12 23:55:31]     "exeErrorDiag": "",
[2025-10-12 23:55:31]     "pilotErrorCode": 0,
[2025-10-12 23:55:31]     "pilotErrorDiag": "",
[2025-10-12 23:55:31]  *** Listing of results directory ***
[2025-10-12 23:55:31] total 410032
[2025-10-12 23:55:31] -rw-r--r-- 1 boinc boinc    557409 Oct 12 12:16 pilot3.tar.gz
[2025-10-12 23:55:31] -rwx------ 1 boinc boinc     36292 Oct 12 12:24 runpilot2-wrapper.sh
[2025-10-12 23:55:31] -rw-r--r-- 1 boinc boinc      5112 Oct 12 12:24 queuedata.json
[2025-10-12 23:55:31] -rw-r--r-- 1 boinc boinc       100 Oct 12 22:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 23:55:31] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 22:57 run_atlas
[2025-10-12 23:55:31] -rw-r--r-- 1 boinc boinc       105 Oct 12 22:57 job.xml
[2025-10-12 23:55:31] -rw-r--r-- 1 boinc boinc      6665 Oct 12 22:57 init_data.xml
[2025-10-12 23:55:31] -rw-r--r-- 2 boinc boinc 220266256 Oct 12 22:57 EVNT.46676267._003621.pool.root.1
[2025-10-12 23:55:31] -rw-r--r-- 2 boinc boinc     15120 Oct 12 22:57 start_atlas.sh
[2025-10-12 23:55:31] drwxrwx--x 2 boinc boinc      4096 Oct 12 22:57 shared
[2025-10-12 23:55:31] -rw-r--r-- 2 boinc boinc    569676 Oct 12 22:57 input.tar.gz
[2025-10-12 23:55:31] -rw-r--r-- 1 boinc boinc         0 Oct 12 22:57 boinc_lockfile
[2025-10-12 23:55:31] -rw-r--r-- 1 boinc boinc      2550 Oct 12 22:57 pandaJob.out
[2025-10-12 23:55:31] -rw------- 1 boinc boinc    975536 Oct 12 22:57 agis_schedconf.cvmfs.json
[2025-10-12 23:55:31] -rw------- 1 boinc boinc   1560580 Oct 12 22:57 agis_ddmendpoints.agis.ALL.json
[2025-10-12 23:55:31] drwx------ 5 boinc boinc      4096 Oct 12 22:57 pilot3
[2025-10-12 23:55:31] -rw------- 1 boinc boinc 193938253 Oct 12 23:53 HITS.46676269._076047.pool.root.1
[2025-10-12 23:55:31] -rw-r--r-- 1 boinc boinc       530 Oct 12 23:54 boinc_task_state.xml
[2025-10-12 23:55:31] -rw------- 1 boinc boinc      1022 Oct 12 23:54 memory_monitor_summary.json
[2025-10-12 23:55:31] -rw------- 1 boinc boinc        95 Oct 12 23:54 pilot_heartbeat.json
[2025-10-12 23:55:31] -rw------- 1 boinc boinc    362396 Oct 12 23:54 log.46676269._076047.job.log.tgz.1
[2025-10-12 23:55:31] -rw------- 1 boinc boinc      7782 Oct 12 23:54 heartbeat.json
[2025-10-12 23:55:31] -rw-r--r-- 1 boinc boinc      8192 Oct 12 23:55 boinc_mmap_file
[2025-10-12 23:55:31] -rw-r--r-- 1 boinc boinc        27 Oct 12 23:55 wrapper_checkpoint.txt
[2025-10-12 23:55:31] -rw------- 1 boinc boinc      5084 Oct 12 23:55 pilotlog.txt
[2025-10-12 23:55:31] -rw------- 1 boinc boinc    517265 Oct 12 23:55 log.46676269._076047.job.log.1
[2025-10-12 23:55:31] -rw------- 1 boinc boinc       357 Oct 12 23:55 output.list
[2025-10-12 23:55:31] -rw-r--r-- 1 boinc boinc       620 Oct 12 23:55 runtime_log
[2025-10-12 23:55:31] -rw------- 1 boinc boinc    901120 Oct 12 23:55 result.tar.gz
[2025-10-12 23:55:31] -rw-r--r-- 1 boinc boinc      8764 Oct 12 23:55 runtime_log.err
[2025-10-12 23:55:31] -rw------- 1 boinc boinc       663 Oct 12 23:55 HNOLDmCR8R8n9Rq4apOajLDm4fhM0noT9bVof3QYDm8eTMDmfJ1Lrn.diag
[2025-10-12 23:55:31] -rw-r--r-- 1 boinc boinc     22488 Oct 12 23:55 stderr.txt
[2025-10-12 23:55:31] HITS file was successfully produced:
[2025-10-12 23:55:31] -rw------- 1 boinc boinc 193938253 Oct 12 23:53 shared/HITS.pool.root.1
[2025-10-12 23:55:31]  *** Contents of shared directory: ***
[2025-10-12 23:55:31] total 405964
[2025-10-12 23:55:31] -rw-r--r-- 2 boinc boinc 220266256 Oct 12 22:57 ATLAS.root_0
[2025-10-12 23:55:31] -rw-r--r-- 2 boinc boinc     15120 Oct 12 22:57 start_atlas.sh
[2025-10-12 23:55:31] -rw-r--r-- 2 boinc boinc    569676 Oct 12 22:57 input.tar.gz
[2025-10-12 23:55:31] -rw------- 1 boinc boinc 193938253 Oct 12 23:53 HITS.pool.root.1
[2025-10-12 23:55:31] -rw------- 1 boinc boinc    901120 Oct 12 23:55 result.tar.gz
23:55:32 (1904919): run_atlas exited; CPU time 35062.797845
23:55:32 (1904919): called boinc_finish(0)

</stderr_txt>
]]>

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