Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:29:30 (3804172): wrapper (7.7.26015): starting
04:29:30 (3804172): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 04:29:30] Arguments: --nthreads 4
[2025-10-13 04:29:30] Threads: 4
[2025-10-13 04:29:30] Checking for CVMFS
[2025-10-13 04:29:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 04:29:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 04:29:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 04:29:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 04:29:30] 2.9.2.0 1822434 5044 94924 151645 3 56 22535962 36864001 0 130560 0 5210936 99.993 176511 729 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 04:29:30] CVMFS is ok
[2025-10-13 04:29:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 04:29:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 04:29:30] Further information can be found at the LHC@home message board.
[2025-10-13 04:29:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 04:29:30] Checking for apptainer binary...
[2025-10-13 04:29:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 04:29:30] Running /usr/bin/apptainer --version
[2025-10-13 04:29:30] apptainer version 1.4.1-1.1
[2025-10-13 04:29:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 04:29:30] thA315b
[2025-10-13 04:29:30] apptainer works
[2025-10-13 04:29:30] Set ATHENA_PROC_NUMBER=4
[2025-10-13 04:29:30] Set ATHENA_CORE_NUMBER=4
[2025-10-13 04:29:31] Starting ATLAS job with PandaID=6839928801
[2025-10-13 04:29:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:32:48]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:32:48] 2025-10-13 03:31:59,251 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:32:48] 2025-10-13 03:31:59,251 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:32:48] 2025-10-13 03:31:59,251 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:32:48] 2025-10-13 03:31:59,251 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:32:48] 2025-10-13 03:31:59,251 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:32:48] 2025-10-13 03:31:59,251 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:32:48] 2025-10-13 03:31:59,251 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:32:48] 2025-10-13 03:31:59,251 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:32:48] 2025-10-13 03:31:59,251 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:32:48] 2025-10-13 03:31:59,251 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:32:48] 2025-10-13 03:31:59,251 | INFO     | job 6839928801 has completed (purged errors)
[2025-10-13 05:32:48] 2025-10-13 03:31:59,251 | INFO     | overall cleanup function is called
[2025-10-13 05:32:48] 2025-10-13 03:32:00,258 | INFO     | --- collectZombieJob: --- 10, [3814506]
[2025-10-13 05:32:48] 2025-10-13 03:32:00,258 | INFO     | zombie collector waiting for pid 3814506
[2025-10-13 05:32:48] 2025-10-13 03:32:00,258 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:32:48] 2025-10-13 03:32:00,258 | INFO     | collected zombie processes
[2025-10-13 05:32:48] 2025-10-13 03:32:00,258 | INFO     | will attempt to kill all subprocesses of pid=3814506
[2025-10-13 05:32:48] 2025-10-13 03:32:00,304 | INFO     | process IDs to be killed: [3814506] (in reverse order)
[2025-10-13 05:32:48] 2025-10-13 03:32:00,330 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:32:48] 2025-10-13 03:32:00,331 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:32:48] 2025-10-13 03:32:00,332 | INFO     | did not find any defunct processes belonging to 3814506
[2025-10-13 05:32:48] 2025-10-13 03:32:00,333 | INFO     | did not find any defunct processes belonging to 3814506
[2025-10-13 05:32:48] 2025-10-13 03:32:00,333 | INFO     | ready for new job
[2025-10-13 05:32:48] 2025-10-13 03:32:00,333 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:32:48] 2025-10-13 03:32:00,334 | INFO     | ***************************************
[2025-10-13 05:32:48] 2025-10-13 03:32:00,334 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:32:48] 2025-10-13 03:32:00,334 | INFO     | ***************************************
[2025-10-13 05:32:48] 2025-10-13 03:32:00,334 | INFO     | 
[2025-10-13 05:32:48] 2025-10-13 03:32:00,334 | INFO     | architecture information:
[2025-10-13 05:32:48] 2025-10-13 03:32:00,335 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:32:48] 2025-10-13 03:32:00,344 | INFO     | cat /etc/os-release:
[2025-10-13 05:32:48] NAME="CentOS Linux"
[2025-10-13 05:32:48] VERSION="7 (Core)"
[2025-10-13 05:32:48] ID="centos"
[2025-10-13 05:32:48] ID_LIKE="rhel fedora"
[2025-10-13 05:32:48] VERSION_ID="7"
[2025-10-13 05:32:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:32:48] ANSI_COLOR="0;31"
[2025-10-13 05:32:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:32:48] HOME_URL="https://www.centos.org/"
[2025-10-13 05:32:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:32:48] 
[2025-10-13 05:32:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:32:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:32:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:32:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:32:48] 
[2025-10-13 05:32:48] 2025-10-13 03:32:00,344 | INFO     | ***************************************
[2025-10-13 05:32:48] 2025-10-13 03:32:00,847 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 05:32:48] 2025-10-13 03:32:00,861 | INFO     | sufficient remaining disk space (337009180672 B)
[2025-10-13 05:32:48] 2025-10-13 03:32:00,861 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:32:48] 2025-10-13 03:32:00,861 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:32:48] 2025-10-13 03:32:00,861 | INFO     | update_server=False
[2025-10-13 05:32:48] 2025-10-13 03:32:00,861 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:32:48] 2025-10-13 03:32:00,862 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:32:48] 2025-10-13 03:32:00,862 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:32:48] 2025-10-13 03:32:00,862 | INFO     | aborting loop
[2025-10-13 05:32:48] 2025-10-13 03:32:00,862 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 05:32:48] 2025-10-13 03:32:00,862 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:32:48] 2025-10-13 03:32:00,862 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:32:48] 2025-10-13 03:32:00,862 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:32:48] 2025-10-13 03:32:00,862 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:32:48] 2025-10-13 03:32:01,047 | INFO     | all data control threads have been joined
[2025-10-13 05:32:48] 2025-10-13 03:32:01,867 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:32:48] 2025-10-13 03:32:01,867 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:32:48] 2025-10-13 03:32:01,868 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:32:48] 2025-10-13 03:32:01,964 | INFO     | all job control threads have been joined
[2025-10-13 05:32:48] 2025-10-13 03:32:01,988 | INFO     | all payload control threads have been joined
[2025-10-13 05:32:48] 2025-10-13 03:32:02,053 | INFO     | [data] control thread has finished
[2025-10-13 05:32:48] 2025-10-13 03:32:02,618 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:32:48] 2025-10-13 03:32:02,648 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:32:48] 2025-10-13 03:32:02,679 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:32:48] 2025-10-13 03:32:02,734 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:32:48] 2025-10-13 03:32:02,802 | INFO     | [job] validate thread has finished
[2025-10-13 05:32:48] 2025-10-13 03:32:02,868 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:32:48] 2025-10-13 03:32:02,914 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:32:48] 2025-10-13 03:32:02,952 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:32:48] 2025-10-13 03:32:02,969 | INFO     | [job] control thread has finished
[2025-10-13 05:32:48] 2025-10-13 03:32:02,994 | INFO     | [payload] control thread has finished
[2025-10-13 05:32:48] 2025-10-13 03:32:03,259 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:32:48] 2025-10-13 03:32:06,685 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:32:48] 2025-10-13 03:32:11,239 | INFO     | job.realtimelogging is not enabled
[2025-10-13 05:32:48] 2025-10-13 03:32:12,244 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:32:48] 2025-10-13 03:32:41,627 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:32:48] 2025-10-13 03:32:43,346 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140601759094592)>', '<ExcThread(monitor, started 140601477531392)>']
[2025-10-13 05:32:48] 2025-10-13 03:32:44,093 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:32:48] 2025-10-13 03:32:44,093 | INFO     | [monitor] control thread has ended
[2025-10-13 05:32:48] 2025-10-13 03:32:48,365 | INFO     | all workflow threads have been joined
[2025-10-13 05:32:48] 2025-10-13 03:32:48,365 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:32:48] 2025-10-13 03:32:48,365 | INFO     | traces error code: 0
[2025-10-13 05:32:48] 2025-10-13 03:32:48,366 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:32:48] 2025-10-13 03:32:48,421 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:32:48] 2025-10-13 03:32:48,424 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:32:48] 2025-10-13 03:32:48,427 [wrapper] pilotpid: 3807949
[2025-10-13 05:32:48] 2025-10-13 03:32:48,429 [wrapper] Pilot exit status: 0
[2025-10-13 05:32:48] 2025-10-13 03:32:48,437 [wrapper] pandaids: 6839928801
[2025-10-13 05:32:48] 2025-10-13 03:32:48,457 [wrapper] cleanup supervisor_pilot 3824133 3807950
[2025-10-13 05:32:48] 2025-10-13 03:32:48,459 [wrapper] Test setup, not cleaning
[2025-10-13 05:32:48] 2025-10-13 03:32:48,462 [wrapper] apfmon messages muted
[2025-10-13 05:32:48] 2025-10-13 03:32:48,464 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:32:48] 2025-10-13 03:32:48,467 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:32:48]  *** Error codes and diagnostics ***
[2025-10-13 05:32:48]     "exeErrorCode": 0,
[2025-10-13 05:32:48]     "exeErrorDiag": "",
[2025-10-13 05:32:48]     "pilotErrorCode": 0,
[2025-10-13 05:32:48]     "pilotErrorDiag": "",
[2025-10-13 05:32:48]  *** Listing of results directory ***
[2025-10-13 05:32:48] total 412376
[2025-10-13 05:32:48] -rw-r--r-- 1 boinc boinc    557409 Oct 12 14:10 pilot3.tar.gz
[2025-10-13 05:32:48] -rwx------ 1 boinc boinc     36292 Oct 12 14:13 runpilot2-wrapper.sh
[2025-10-13 05:32:48] -rw-r--r-- 1 boinc boinc      5112 Oct 12 14:13 queuedata.json
[2025-10-13 05:32:48] -rw-r--r-- 1 boinc boinc       100 Oct 13 04:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:32:48] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 04:29 run_atlas
[2025-10-13 05:32:48] -rw-r--r-- 1 boinc boinc       105 Oct 13 04:29 job.xml
[2025-10-13 05:32:48] -rw-r--r-- 2 boinc boinc 219937992 Oct 13 04:29 EVNT.46676267._003756.pool.root.1
[2025-10-13 05:32:48] -rw-r--r-- 2 boinc boinc    569677 Oct 13 04:29 input.tar.gz
[2025-10-13 05:32:48] -rw-r--r-- 2 boinc boinc     15120 Oct 13 04:29 start_atlas.sh
[2025-10-13 05:32:48] drwxrwx--x 2 boinc boinc      4096 Oct 13 04:29 shared
[2025-10-13 05:32:48] -rw-r--r-- 1 boinc boinc         0 Oct 13 04:29 boinc_setup_complete
[2025-10-13 05:32:48] -rw-r--r-- 1 boinc boinc      6443 Oct 13 04:29 init_data.xml
[2025-10-13 05:32:48] -rw-r--r-- 1 boinc boinc         0 Oct 13 04:29 boinc_lockfile
[2025-10-13 05:32:48] -rw-r--r-- 1 boinc boinc      2550 Oct 13 04:29 pandaJob.out
[2025-10-13 05:32:48] -rw------- 1 boinc boinc    974373 Oct 13 04:29 agis_schedconf.cvmfs.json
[2025-10-13 05:32:48] -rw------- 1 boinc boinc   1560580 Oct 13 04:29 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:32:48] drwx------ 5 boinc boinc      4096 Oct 13 04:29 pilot3
[2025-10-13 05:32:48] -rw------- 1 boinc boinc 196823595 Oct 13 05:31 HITS.46676269._077938.pool.root.1
[2025-10-13 05:32:48] -rw-r--r-- 1 boinc boinc       529 Oct 13 05:31 boinc_task_state.xml
[2025-10-13 05:32:48] -rw------- 1 boinc boinc      1018 Oct 13 05:31 memory_monitor_summary.json
[2025-10-13 05:32:48] -rw------- 1 boinc boinc    246729 Oct 13 05:31 log.46676269._077938.job.log.tgz.1
[2025-10-13 05:32:48] -rw------- 1 boinc boinc        95 Oct 13 05:31 pilot_heartbeat.json
[2025-10-13 05:32:48] -rw------- 1 boinc boinc      7752 Oct 13 05:31 heartbeat.json
[2025-10-13 05:32:48] -rw-r--r-- 1 boinc boinc      8192 Oct 13 05:32 boinc_mmap_file
[2025-10-13 05:32:48] -rw-r--r-- 1 boinc boinc        27 Oct 13 05:32 wrapper_checkpoint.txt
[2025-10-13 05:32:48] -rw------- 1 boinc boinc      4628 Oct 13 05:32 pilotlog.txt
[2025-10-13 05:32:48] -rw------- 1 boinc boinc    564047 Oct 13 05:32 log.46676269._077938.job.log.1
[2025-10-13 05:32:48] -rw------- 1 boinc boinc       357 Oct 13 05:32 output.list
[2025-10-13 05:32:48] -rw-r--r-- 1 boinc boinc       620 Oct 13 05:32 runtime_log
[2025-10-13 05:32:48] -rw------- 1 boinc boinc    829440 Oct 13 05:32 result.tar.gz
[2025-10-13 05:32:48] -rw-r--r-- 1 boinc boinc      8782 Oct 13 05:32 runtime_log.err
[2025-10-13 05:32:48] -rw------- 1 boinc boinc       659 Oct 13 05:32 bgKNDm079R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeijNDmJEPTan.diag
[2025-10-13 05:32:48] -rw-r--r-- 1 boinc boinc     11845 Oct 13 05:32 stderr.txt
[2025-10-13 05:32:48] HITS file was successfully produced:
[2025-10-13 05:32:48] -rw------- 1 boinc boinc 196823595 Oct 13 05:31 shared/HITS.pool.root.1
[2025-10-13 05:32:48]  *** Contents of shared directory: ***
[2025-10-13 05:32:48] total 408392
[2025-10-13 05:32:48] -rw-r--r-- 2 boinc boinc 219937992 Oct 13 04:29 ATLAS.root_0
[2025-10-13 05:32:48] -rw-r--r-- 2 boinc boinc    569677 Oct 13 04:29 input.tar.gz
[2025-10-13 05:32:48] -rw-r--r-- 2 boinc boinc     15120 Oct 13 04:29 start_atlas.sh
[2025-10-13 05:32:48] -rw------- 1 boinc boinc 196823595 Oct 13 05:31 HITS.pool.root.1
[2025-10-13 05:32:48] -rw------- 1 boinc boinc    829440 Oct 13 05:32 result.tar.gz
05:32:50 (3804172): run_atlas exited; CPU time 13918.425703
05:32:50 (3804172): called boinc_finish(0)

</stderr_txt>
]]>

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