Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:52:39 (16009): wrapper (7.7.26015): starting
12:52:39 (16009): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 12:52:39] Arguments: --nthreads 8
[2025-10-12 12:52:39] Threads: 8
[2025-10-12 12:52:39] Checking for CVMFS
[2025-10-12 12:52:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:52:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:52:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:52:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:52:39] 2.11.2.0 23418 11929 104224 151627 0 57 13871189 18432001 917 130560 0 17656882 99.996 396192 34836 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 12:52:39] CVMFS is ok
[2025-10-12 12:52:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:52:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:52:39] Further information can be found at the LHC@home message board.
[2025-10-12 12:52:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:52:39] Checking for apptainer binary...
[2025-10-12 12:52:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:52:39] Running /usr/bin/apptainer --version
[2025-10-12 12:52:39] apptainer version 1.3.2-1.el7
[2025-10-12 12:52:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:52:40] c-206-24.aglt2.org
[2025-10-12 12:52:40] apptainer works
[2025-10-12 12:52:40] Set ATHENA_PROC_NUMBER=8
[2025-10-12 12:52:40] Set ATHENA_CORE_NUMBER=8
[2025-10-12 12:52:40] Starting ATLAS job with PandaID=6840224959
[2025-10-12 12:52:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 15:54:14]  *** The last 200 lines of the pilot log: ***
[2025-10-12 15:54:14] 2025-10-12 19:53:33,983 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 15:54:14] 2025-10-12 19:53:33,983 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 15:54:14] 2025-10-12 19:53:33,986 | INFO     | fitting pss+swap vs Time
[2025-10-12 15:54:14] 2025-10-12 19:53:33,986 | INFO     | sum of square deviations: 1748737904.5
[2025-10-12 15:54:14] 2025-10-12 19:53:33,987 | INFO     | sum of deviations: 8706304727.0
[2025-10-12 15:54:14] 2025-10-12 19:53:33,987 | INFO     | mean x: 1760293393.5
[2025-10-12 15:54:14] 2025-10-12 19:53:33,987 | INFO     | mean y: 2465175.157303371
[2025-10-12 15:54:14] 2025-10-12 19:53:33,987 | INFO     | -- intersect: -8761369961.771257
[2025-10-12 15:54:14] 2025-10-12 19:53:33,987 | INFO     | intersect: -8761369961.771257
[2025-10-12 15:54:14] 2025-10-12 19:53:33,988 | INFO     | chi2: 2.03955420397574
[2025-10-12 15:54:14] 2025-10-12 19:53:33,988 | INFO     | sum of square deviations: 1605470102.0
[2025-10-12 15:54:14] 2025-10-12 19:53:33,989 | INFO     | sum of deviations: 20003468371.0
[2025-10-12 15:54:14] 2025-10-12 19:53:33,989 | INFO     | mean x: 1760293241.0
[2025-10-12 15:54:14] 2025-10-12 19:53:33,989 | INFO     | mean y: 2476916.0693641617
[2025-10-12 15:54:14] 2025-10-12 19:53:33,989 | INFO     | -- intersect: -21930021313.678787
[2025-10-12 15:54:14] 2025-10-12 19:53:33,989 | INFO     | intersect: -21930021313.678787
[2025-10-12 15:54:14] 2025-10-12 19:53:33,990 | INFO     | chi2: 1.264951396766287
[2025-10-12 15:54:14] 2025-10-12 19:53:33,990 | INFO     | current chi2=1.264951396766287 (change=37.979025303642615 %)
[2025-10-12 15:54:14] 2025-10-12 19:53:33,990 | INFO     | sum of square deviations: 1470248962.0
[2025-10-12 15:54:14] 2025-10-12 19:53:33,991 | INFO     | sum of deviations: 19358349328.999996
[2025-10-12 15:54:14] 2025-10-12 19:53:33,991 | INFO     | mean x: 1760293088.5
[2025-10-12 15:54:14] 2025-10-12 19:53:33,991 | INFO     | mean y: 2476188.3214285714
[2025-10-12 15:54:14] 2025-10-12 19:53:33,991 | INFO     | -- intersect: -23174801544.459793
[2025-10-12 15:54:14] 2025-10-12 19:53:33,991 | INFO     | intersect: -23174801544.459793
[2025-10-12 15:54:14] 2025-10-12 19:53:33,991 | INFO     | chi2: 1.2659076027432263
[2025-10-12 15:54:14] 2025-10-12 19:53:33,991 | INFO     | current chi2=1.2659076027432263 (change=-0.07559230966372919 %)
[2025-10-12 15:54:14] 2025-10-12 19:53:33,992 | INFO     | right removable region: 167
[2025-10-12 15:54:14] 2025-10-12 19:53:33,992 | INFO     | sum of square deviations: 1605470102.0
[2025-10-12 15:54:14] 2025-10-12 19:53:33,993 | INFO     | sum of deviations: -15032535792.999998
[2025-10-12 15:54:14] 2025-10-12 19:53:33,993 | INFO     | mean x: 1760293546.0
[2025-10-12 15:54:14] 2025-10-12 19:53:33,993 | INFO     | mean y: 2490114.456647399
[2025-10-12 15:54:14] 2025-10-12 19:53:33,993 | INFO     | -- intersect: 16484687885.357204
[2025-10-12 15:54:14] 2025-10-12 19:53:33,993 | INFO     | intersect: 16484687885.357204
[2025-10-12 15:54:14] 2025-10-12 19:53:33,993 | INFO     | chi2: 0.8197974235183692
[2025-10-12 15:54:14] 2025-10-12 19:53:33,993 | INFO     | current chi2=0.8197974235183692 (change=59.80506809182501 %)
[2025-10-12 15:54:14] 2025-10-12 19:53:33,994 | INFO     | sum of square deviations: 1470248962.0
[2025-10-12 15:54:14] 2025-10-12 19:53:33,994 | INFO     | sum of deviations: -13022095688.500002
[2025-10-12 15:54:14] 2025-10-12 19:53:33,995 | INFO     | mean x: 1760293698.5
[2025-10-12 15:54:14] 2025-10-12 19:53:33,995 | INFO     | mean y: 2487839.4345238097
[2025-10-12 15:54:14] 2025-10-12 19:53:33,995 | INFO     | -- intersect: 15593529611.39979
[2025-10-12 15:54:14] 2025-10-12 19:53:33,995 | INFO     | intersect: 15593529611.39979
[2025-10-12 15:54:14] 2025-10-12 19:53:33,995 | INFO     | chi2: 0.8178557921608925
[2025-10-12 15:54:14] 2025-10-12 19:53:33,995 | INFO     | current chi2=0.8178557921608925 (change=0.23684282260166156 %)
[2025-10-12 15:54:14] 2025-10-12 19:53:33,995 | INFO     | left removable region: 20
[2025-10-12 15:54:14] 2025-10-12 19:53:33,996 | INFO     | sum of square deviations: 984941258.0
[2025-10-12 15:54:14] 2025-10-12 19:53:33,996 | INFO     | sum of deviations: 3031207974.000001
[2025-10-12 15:54:14] 2025-10-12 19:53:33,996 | INFO     | mean x: 1760293668.0
[2025-10-12 15:54:14] 2025-10-12 19:53:33,996 | INFO     | mean y: 2494138.911564626
[2025-10-12 15:54:14] 2025-10-12 19:53:33,997 | INFO     | -- intersect: -5414901223.181501
[2025-10-12 15:54:14] 2025-10-12 19:53:33,997 | INFO     | intersect: -5414901223.181501
[2025-10-12 15:54:14] 2025-10-12 19:53:33,997 | INFO     | chi2: 0.0038743391842993905
[2025-10-12 15:54:14] 2025-10-12 19:53:33,997 | INFO     | -- intersect: -5414901223.181501
[2025-10-12 15:54:14] 2025-10-12 19:53:33,997 | INFO     | current memory leak: 3.08 B/s (using 147 data points, chi2=0.00)
[2025-10-12 15:54:14] 2025-10-12 19:53:33,997 | INFO     | could have reported an average CPU frequency of 2426 MHz (9 samples)
[2025-10-12 15:54:14] 2025-10-12 19:53:33,998 | INFO     | ..............................
[2025-10-12 15:54:14] 2025-10-12 19:53:33,998 | INFO     | . Timing measurements:
[2025-10-12 15:54:14] 2025-10-12 19:53:33,998 | INFO     | . get job = 0 s
[2025-10-12 15:54:14] 2025-10-12 19:53:33,998 | INFO     | . initial setup = 2 s
[2025-10-12 15:54:14] 2025-10-12 19:53:33,998 | INFO     | . payload setup = 4 s
[2025-10-12 15:54:14] 2025-10-12 19:53:33,998 | INFO     | . stage-in = 0 s
[2025-10-12 15:54:14] 2025-10-12 19:53:33,998 | INFO     | . payload execution = 10814 s
[2025-10-12 15:54:14] 2025-10-12 19:53:33,998 | INFO     | . stage-out = 2 s
[2025-10-12 15:54:14] 2025-10-12 19:53:33,998 | INFO     | . log creation = 0 s
[2025-10-12 15:54:14] 2025-10-12 19:53:33,998 | INFO     | ..............................
[2025-10-12 15:54:14] 2025-10-12 19:53:34,081 | INFO     | 
[2025-10-12 15:54:14] 2025-10-12 19:53:34,081 | INFO     | job summary report
[2025-10-12 15:54:14] 2025-10-12 19:53:34,081 | INFO     | --------------------------------------------------
[2025-10-12 15:54:14] 2025-10-12 19:53:34,081 | INFO     | PanDA job id: 6840224959
[2025-10-12 15:54:14] 2025-10-12 19:53:34,082 | INFO     | task id: 46676269
[2025-10-12 15:54:14] 2025-10-12 19:53:34,082 | INFO     | errors: (none)
[2025-10-12 15:54:14] 2025-10-12 19:53:34,082 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 15:54:14] 2025-10-12 19:53:34,082 | INFO     | pilot state: finished 
[2025-10-12 15:54:14] 2025-10-12 19:53:34,082 | INFO     | transexitcode: 0
[2025-10-12 15:54:14] 2025-10-12 19:53:34,082 | INFO     | exeerrorcode: 0
[2025-10-12 15:54:14] 2025-10-12 19:53:34,083 | INFO     | exeerrordiag: 
[2025-10-12 15:54:14] 2025-10-12 19:53:34,083 | INFO     | exitcode: 0
[2025-10-12 15:54:14] 2025-10-12 19:53:34,083 | INFO     | exitmsg: OK
[2025-10-12 15:54:14] 2025-10-12 19:53:34,083 | INFO     | cpuconsumptiontime: 82788 s
[2025-10-12 15:54:14] 2025-10-12 19:53:34,083 | INFO     | nevents: 400
[2025-10-12 15:54:14] 2025-10-12 19:53:34,083 | INFO     | neventsw: 0
[2025-10-12 15:54:14] 2025-10-12 19:53:34,083 | INFO     | pid: 31406
[2025-10-12 15:54:14] 2025-10-12 19:53:34,084 | INFO     | pgrp: 31406
[2025-10-12 15:54:14] 2025-10-12 19:53:34,084 | INFO     | corecount: 8
[2025-10-12 15:54:14] 2025-10-12 19:53:34,084 | INFO     | event service: False
[2025-10-12 15:54:14] 2025-10-12 19:53:34,084 | INFO     | sizes: {0: 2348579, 1: 2348834, 4: 2349096, 12: 2349124, 10822: 2378199, 10823: 2378198, 10825: 2387436, 10828: 2387638}
[2025-10-12 15:54:14] 2025-10-12 19:53:34,084 | INFO     | --------------------------------------------------
[2025-10-12 15:54:14] 2025-10-12 19:53:34,085 | INFO     | 
[2025-10-12 15:54:14] 2025-10-12 19:53:34,085 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 15:54:14] 2025-10-12 19:53:34,101 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 15:54:14] 2025-10-12 19:53:34,101 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 15:54:14] 2025-10-12 19:53:34,101 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 15:54:14] 2025-10-12 19:53:34,102 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 15:54:14] 2025-10-12 19:53:34,102 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 15:54:14] 2025-10-12 19:53:34,102 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 15:54:14] 2025-10-12 19:53:34,102 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 15:54:14] 2025-10-12 19:53:34,102 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 15:54:14] 2025-10-12 19:53:34,102 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 15:54:14] 2025-10-12 19:53:34,103 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 15:54:14] 2025-10-12 19:53:34,103 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 15:54:14] 2025-10-12 19:53:34,103 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 15:54:14] 2025-10-12 19:53:34,103 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 15:54:14] 2025-10-12 19:53:34,103 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 15:54:14] 2025-10-12 19:53:34,104 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 15:54:14] 2025-10-12 19:53:34,104 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 15:54:14] 2025-10-12 19:53:34,104 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 15:54:14] 2025-10-12 19:53:34,104 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 15:54:14] 2025-10-12 19:53:34,104 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 15:54:14] 2025-10-12 19:53:34,104 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 15:54:14] 2025-10-12 19:53:34,105 | INFO     | job 6840224959 has completed (purged errors)
[2025-10-12 15:54:14] 2025-10-12 19:53:34,105 | INFO     | overall cleanup function is called
[2025-10-12 15:54:14] 2025-10-12 19:53:35,113 | INFO     | --- collectZombieJob: --- 10, [31406]
[2025-10-12 15:54:14] 2025-10-12 19:53:35,113 | INFO     | zombie collector waiting for pid 31406
[2025-10-12 15:54:14] 2025-10-12 19:53:35,113 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 15:54:14] 2025-10-12 19:53:35,113 | INFO     | collected zombie processes
[2025-10-12 15:54:14] 2025-10-12 19:53:35,114 | INFO     | will attempt to kill all subprocesses of pid=31406
[2025-10-12 15:54:14] 2025-10-12 19:53:35,216 | INFO     | process IDs to be killed: [31406] (in reverse order)
[2025-10-12 15:54:14] 2025-10-12 19:53:35,254 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 15:54:14] 2025-10-12 19:53:35,254 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 15:54:14] 2025-10-12 19:53:35,257 | INFO     | did not find any defunct processes belonging to 31406
[2025-10-12 15:54:14] 2025-10-12 19:53:35,259 | INFO     | did not find any defunct processes belonging to 31406
[2025-10-12 15:54:14] 2025-10-12 19:53:35,259 | INFO     | ready for new job
[2025-10-12 15:54:14] 2025-10-12 19:53:35,259 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 15:54:14] 2025-10-12 19:53:35,261 | INFO     | ***************************************
[2025-10-12 15:54:14] 2025-10-12 19:53:35,261 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 15:54:14] 2025-10-12 19:53:35,261 | INFO     | ***************************************
[2025-10-12 15:54:14] 2025-10-12 19:53:35,261 | INFO     | 
[2025-10-12 15:54:14] 2025-10-12 19:53:35,262 | INFO     | architecture information:
[2025-10-12 15:54:14] 2025-10-12 19:53:35,263 | INFO     | executing command: cat /etc/os-release
[2025-10-12 15:54:14] 2025-10-12 19:53:35,274 | INFO     | cat /etc/os-release:
[2025-10-12 15:54:14] NAME="CentOS Linux"
[2025-10-12 15:54:14] VERSION="7 (Core)"
[2025-10-12 15:54:14] ID="centos"
[2025-10-12 15:54:14] ID_LIKE="rhel fedora"
[2025-10-12 15:54:14] VERSION_ID="7"
[2025-10-12 15:54:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 15:54:14] ANSI_COLOR="0;31"
[2025-10-12 15:54:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 15:54:14] HOME_URL="https://www.centos.org/"
[2025-10-12 15:54:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 15:54:14] 
[2025-10-12 15:54:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 15:54:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 15:54:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 15:54:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 15:54:14] 
[2025-10-12 15:54:14] 2025-10-12 19:53:35,275 | INFO     | ***************************************
[2025-10-12 15:54:14] 2025-10-12 19:53:35,777 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 15:54:14] 2025-10-12 19:53:35,791 | INFO     | sufficient remaining disk space (27947696128 B)
[2025-10-12 15:54:14] 2025-10-12 19:53:35,791 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 15:54:14] 2025-10-12 19:53:35,791 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 15:54:14] 2025-10-12 19:53:35,791 | INFO     | update_server=False
[2025-10-12 15:54:14] 2025-10-12 19:53:35,791 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 15:54:14] 2025-10-12 19:53:35,792 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:54:14] 2025-10-12 19:53:35,972 | INFO     | all payload control threads have been joined
[2025-10-12 15:54:14] 2025-10-12 19:53:36,002 | INFO     | all job control threads have been joined
[2025-10-12 15:54:14] 2025-10-12 19:53:36,062 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:54:14] 2025-10-12 19:53:36,062 | INFO     | aborting loop
[2025-10-12 15:54:14] 2025-10-12 19:53:36,267 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 15:54:14] 2025-10-12 19:53:36,357 | INFO     | all data control threads have been joined
[2025-10-12 15:54:14] 2025-10-12 19:53:36,797 | INFO     | [job] retrieve thread has finished
[2025-10-12 15:54:14] 2025-10-12 19:53:36,797 | INFO     | [job] queue monitor thread has finished
[2025-10-12 15:54:14] 2025-10-12 19:53:36,841 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 15:54:14] 2025-10-12 19:53:36,897 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 15:54:14] 2025-10-12 19:53:36,977 | INFO     | [payload] control thread has finished
[2025-10-12 15:54:14] 2025-10-12 19:53:37,003 | INFO     | [job] control thread has finished
[2025-10-12 15:54:14] 2025-10-12 19:53:37,068 | INFO     | [job] job monitor thread has finished
[2025-10-12 15:54:14] 2025-10-12 19:53:37,362 | INFO     | [data] control thread has finished
[2025-10-12 15:54:14] 2025-10-12 19:53:37,503 | INFO     | [payload] validate_post thread has finished
[2025-10-12 15:54:14] 2025-10-12 19:53:37,783 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 15:54:14] 2025-10-12 19:53:37,783 | INFO     | [job] validate thread has finished
[2025-10-12 15:54:14] 2025-10-12 19:53:37,813 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 15:54:14] 2025-10-12 19:53:38,056 | INFO     | [data] copytool_in thread has finished
[2025-10-12 15:54:14] 2025-10-12 19:53:38,272 | INFO     | [data] copytool_out thread has finished
[2025-10-12 15:54:14] 2025-10-12 19:53:38,292 | INFO     | [payload] failed_post thread has finished
[2025-10-12 15:54:14] 2025-10-12 19:53:40,847 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 15:54:14] 2025-10-12 19:53:45,985 | INFO     | job.realtimelogging is not enabled
[2025-10-12 15:54:14] 2025-10-12 19:53:46,991 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 15:54:14] 2025-10-12 19:54:06,148 | INFO     | PID=19678 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 15:54:14] 2025-10-12 19:54:06,148 | INFO     | .. there are 2 such processes running
[2025-10-12 15:54:14] 2025-10-12 19:54:06,148 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 15:54:14] 2025-10-12 19:54:06,148 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 15:54:14] 2025-10-12 19:54:06,149 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 15:54:14] 2025-10-12 19:54:08,192 | INFO     | [monitor] cgroup control has ended
[2025-10-12 15:54:14] 2025-10-12 19:54:08,773 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139826997614400)>', '<ExcThread(monitor, started 139826259019520)>']
[2025-10-12 15:54:14] 2025-10-12 19:54:09,163 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 15:54:14] 2025-10-12 19:54:09,163 | INFO     | [monitor] control thread has ended
[2025-10-12 15:54:14] 2025-10-12 19:54:13,798 | INFO     | all workflow threads have been joined
[2025-10-12 15:54:14] 2025-10-12 19:54:13,798 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 15:54:14] 2025-10-12 19:54:13,798 | INFO     | traces error code: 0
[2025-10-12 15:54:14] 2025-10-12 19:54:13,799 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 15:54:14] 2025-10-12 19:54:13,897 [wrapper] ==== pilot stdout END ====
[2025-10-12 15:54:14] 2025-10-12 19:54:13,899 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 15:54:14] 2025-10-12 19:54:13,902 [wrapper] pilotpid: 19678
[2025-10-12 15:54:14] 2025-10-12 19:54:13,904 [wrapper] Pilot exit status: 0
[2025-10-12 15:54:14] 2025-10-12 19:54:13,914 [wrapper] pandaids: 6840224959
[2025-10-12 15:54:14] 2025-10-12 19:54:13,951 [wrapper] cleanup supervisor_pilot 20133 19679
[2025-10-12 15:54:14] 2025-10-12 19:54:13,954 [wrapper] Test setup, not cleaning
[2025-10-12 15:54:14] 2025-10-12 19:54:13,957 [wrapper] apfmon messages muted
[2025-10-12 15:54:14] 2025-10-12 19:54:13,960 [wrapper] ==== wrapper stdout END ====
[2025-10-12 15:54:14] 2025-10-12 19:54:13,963 [wrapper] ==== wrapper stderr END ====
[2025-10-12 15:54:14]  *** Error codes and diagnostics ***
[2025-10-12 15:54:14]     "exeErrorCode": 0,
[2025-10-12 15:54:14]     "exeErrorDiag": "",
[2025-10-12 15:54:14]     "pilotErrorCode": 0,
[2025-10-12 15:54:14]     "pilotErrorDiag": "",
[2025-10-12 15:54:14]  *** Listing of results directory ***
[2025-10-12 15:54:14] total 409820
[2025-10-12 15:54:14] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 11:00 pilot3.tar.gz
[2025-10-12 15:54:14] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 11:26 queuedata.json
[2025-10-12 15:54:14] -rwx------ 1 boincer umatlas     36292 Oct 12 11:29 runpilot2-wrapper.sh
[2025-10-12 15:54:14] -rw-r--r-- 1 boincer umatlas       100 Oct 12 12:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 15:54:14] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 12:52 run_atlas
[2025-10-12 15:54:14] -rw-r--r-- 1 boincer umatlas       105 Oct 12 12:52 job.xml
[2025-10-12 15:54:14] -rw-r--r-- 2 boincer umatlas 218725049 Oct 12 12:52 EVNT.46676267._004572.pool.root.1
[2025-10-12 15:54:14] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:52 start_atlas.sh
[2025-10-12 15:54:14] drwxrwx--x 2 boincer umatlas      4096 Oct 12 12:52 shared
[2025-10-12 15:54:14] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 12:52 input.tar.gz
[2025-10-12 15:54:14] -rw-r--r-- 1 boincer umatlas         0 Oct 12 12:52 boinc_lockfile
[2025-10-12 15:54:14] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 12:52 pandaJob.out
[2025-10-12 15:54:14] -rw------- 1 boincer umatlas    975528 Oct 12 12:52 agis_schedconf.cvmfs.json
[2025-10-12 15:54:14] drwx------ 5 boincer umatlas      4096 Oct 12 12:52 pilot3
[2025-10-12 15:54:14] -rw-r--r-- 1 boincer umatlas      5951 Oct 12 15:46 init_data.xml
[2025-10-12 15:54:14] -rw------- 1 boincer umatlas 193154812 Oct 12 15:52 HITS.46676269._082253.pool.root.1
[2025-10-12 15:54:14] -rw-r--r-- 1 boincer umatlas       531 Oct 12 15:53 boinc_task_state.xml
[2025-10-12 15:54:14] -rw------- 1 boincer umatlas      1054 Oct 12 15:53 memory_monitor_summary.json
[2025-10-12 15:54:14] -rw------- 1 boincer umatlas   1560580 Oct 12 15:53 agis_ddmendpoints.agis.ALL.json
[2025-10-12 15:54:14] -rw------- 1 boincer umatlas    416963 Oct 12 15:53 log.46676269._082253.job.log.tgz.1
[2025-10-12 15:54:14] -rw------- 1 boincer umatlas      7857 Oct 12 15:53 heartbeat.json
[2025-10-12 15:54:14] -rw------- 1 boincer umatlas        95 Oct 12 15:54 pilot_heartbeat.json
[2025-10-12 15:54:14] -rw-r--r-- 1 boincer umatlas        28 Oct 12 15:54 wrapper_checkpoint.txt
[2025-10-12 15:54:14] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 15:54 boinc_mmap_file
[2025-10-12 15:54:14] -rw------- 1 boincer umatlas      4893 Oct 12 15:54 pilotlog.txt
[2025-10-12 15:54:14] -rw------- 1 boincer umatlas   1519208 Oct 12 15:54 log.46676269._082253.job.log.1
[2025-10-12 15:54:14] -rw------- 1 boincer umatlas       357 Oct 12 15:54 output.list
[2025-10-12 15:54:14] -rw-r--r-- 1 boincer umatlas       620 Oct 12 15:54 runtime_log
[2025-10-12 15:54:14] -rw------- 1 boincer umatlas   1955840 Oct 12 15:54 result.tar.gz
[2025-10-12 15:54:14] -rw-r--r-- 1 boincer umatlas      8704 Oct 12 15:54 runtime_log.err
[2025-10-12 15:54:14] -rw------- 1 boincer umatlas       662 Oct 12 15:54 GTxLDmTBDS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmARkNDmtKwnln.diag
[2025-10-12 15:54:14] -rw-r--r-- 1 boincer umatlas     20873 Oct 12 15:54 stderr.txt
[2025-10-12 15:54:14] HITS file was successfully produced:
[2025-10-12 15:54:14] -rw------- 1 boincer umatlas 193154812 Oct 12 15:52 shared/HITS.pool.root.1
[2025-10-12 15:54:14]  *** Contents of shared directory: ***
[2025-10-12 15:54:14] total 404724
[2025-10-12 15:54:14] -rw-r--r-- 2 boincer umatlas 218725049 Oct 12 12:52 ATLAS.root_0
[2025-10-12 15:54:14] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:52 start_atlas.sh
[2025-10-12 15:54:14] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 12:52 input.tar.gz
[2025-10-12 15:54:14] -rw------- 1 boincer umatlas 193154812 Oct 12 15:52 HITS.pool.root.1
[2025-10-12 15:54:14] -rw------- 1 boincer umatlas   1955840 Oct 12 15:54 result.tar.gz
15:54:15 (16009): run_atlas exited; CPU time 82922.066389
15:54:15 (16009): called boinc_finish(0)

</stderr_txt>
]]>

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