Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:35:38 (3422641): wrapper (7.7.26015): starting
12:35:38 (3422641): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 12:35:38] Arguments: --nthreads 4
[2025-10-13 12:35:38] Threads: 4
[2025-10-13 12:35:38] Checking for CVMFS
[2025-10-13 12:35:38] No cvmfs_config command found, will try listing directly
[2025-10-13 12:35:38] CVMFS is ok
[2025-10-13 12:35:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 12:35:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 12:35:38] Further information can be found at the LHC@home message board.
[2025-10-13 12:35:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 12:35:38] Checking for apptainer binary...
[2025-10-13 12:35:38] which: no apptainer in ((null))
[2025-10-13 12:35:38] apptainer is not installed, using version from CVMFS
[2025-10-13 12:35:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 12:35:38] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2025-10-13 12:35:38] apptainer works
[2025-10-13 12:35:38] Set ATHENA_PROC_NUMBER=4
[2025-10-13 12:35:38] Set ATHENA_CORE_NUMBER=4
[2025-10-13 12:35:38] Starting ATLAS job with PandaID=6840081073
[2025-10-13 12:35:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 15:53:15]  *** The last 200 lines of the pilot log: ***
[2025-10-13 15:53:15] 2025-10-13 13:47:34,711 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 15:53:15] 2025-10-13 13:47:34,711 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 15:53:15] 2025-10-13 13:47:34,715 | INFO     | fitting pss+swap vs Time
[2025-10-13 15:53:15] 2025-10-13 13:47:34,716 | INFO     | sum of square deviations: 2093397390.0
[2025-10-13 15:53:15] 2025-10-13 13:47:34,717 | INFO     | sum of deviations: -1968451272.999998
[2025-10-13 15:53:15] 2025-10-13 13:47:34,718 | INFO     | mean x: 1760357507.0
[2025-10-13 15:53:15] 2025-10-13 13:47:34,718 | INFO     | mean y: 2327577.703703704
[2025-10-13 15:53:15] 2025-10-13 13:47:34,718 | INFO     | -- intersect: 1657616722.5847206
[2025-10-13 15:53:15] 2025-10-13 13:47:34,718 | INFO     | intersect: 1657616722.5847206
[2025-10-13 15:53:15] 2025-10-13 13:47:34,719 | INFO     | chi2: 2.050512489038346
[2025-10-13 15:53:15] 2025-10-13 13:47:34,719 | INFO     | sum of square deviations: 1931608310.0
[2025-10-13 15:53:15] 2025-10-13 13:47:34,720 | INFO     | sum of deviations: 8704573120.0
[2025-10-13 15:53:15] 2025-10-13 13:47:34,720 | INFO     | mean x: 1760357354.5
[2025-10-13 15:53:15] 2025-10-13 13:47:34,721 | INFO     | mean y: 2337419.7717391304
[2025-10-13 15:53:15] 2025-10-13 13:47:34,721 | INFO     | -- intersect: -7930512749.823467
[2025-10-13 15:53:15] 2025-10-13 13:47:34,721 | INFO     | intersect: -7930512749.823467
[2025-10-13 15:53:15] 2025-10-13 13:47:34,721 | INFO     | chi2: 1.3975243573042986
[2025-10-13 15:53:15] 2025-10-13 13:47:34,721 | INFO     | current chi2=1.3975243573042986 (change=31.845118487441514 %)
[2025-10-13 15:53:15] 2025-10-13 13:47:34,722 | INFO     | sum of square deviations: 1778377530.0
[2025-10-13 15:53:15] 2025-10-13 13:47:34,723 | INFO     | sum of deviations: 8445617384.000001
[2025-10-13 15:53:15] 2025-10-13 13:47:34,723 | INFO     | mean x: 1760357202.0
[2025-10-13 15:53:15] 2025-10-13 13:47:34,723 | INFO     | mean y: 2337163.134078212
[2025-10-13 15:53:15] 2025-10-13 13:47:34,723 | INFO     | -- intersect: -8357700644.6202755
[2025-10-13 15:53:15] 2025-10-13 13:47:34,724 | INFO     | intersect: -8357700644.6202755
[2025-10-13 15:53:15] 2025-10-13 13:47:34,724 | INFO     | chi2: 1.398298820189523
[2025-10-13 15:53:15] 2025-10-13 13:47:34,724 | INFO     | current chi2=1.398298820189523 (change=-0.055416771892140455 %)
[2025-10-13 15:53:15] 2025-10-13 13:47:34,724 | INFO     | right removable region: 178
[2025-10-13 15:53:15] 2025-10-13 13:47:34,725 | INFO     | sum of square deviations: 1931608310.0
[2025-10-13 15:53:15] 2025-10-13 13:47:34,726 | INFO     | sum of deviations: -25520452697.0
[2025-10-13 15:53:15] 2025-10-13 13:47:34,726 | INFO     | mean x: 1760357659.5
[2025-10-13 15:53:15] 2025-10-13 13:47:34,726 | INFO     | mean y: 2349459.9565217393
[2025-10-13 15:53:15] 2025-10-13 13:47:34,726 | INFO     | -- intersect: 23260234687.770325
[2025-10-13 15:53:15] 2025-10-13 13:47:34,727 | INFO     | intersect: 23260234687.770325
[2025-10-13 15:53:15] 2025-10-13 13:47:34,727 | INFO     | chi2: 0.7355616033671803
[2025-10-13 15:53:15] 2025-10-13 13:47:34,727 | INFO     | current chi2=0.7355616033671803 (change=64.12791400689562 %)
[2025-10-13 15:53:15] 2025-10-13 13:47:34,727 | INFO     | sum of square deviations: 1778377530.0
[2025-10-13 15:53:15] 2025-10-13 13:47:34,729 | INFO     | sum of deviations: -23105997484.0
[2025-10-13 15:53:15] 2025-10-13 13:47:34,729 | INFO     | mean x: 1760357812.0
[2025-10-13 15:53:15] 2025-10-13 13:47:34,729 | INFO     | mean y: 2347031.318435754
[2025-10-13 15:53:15] 2025-10-13 13:47:34,729 | INFO     | -- intersect: 22874218998.24086
[2025-10-13 15:53:15] 2025-10-13 13:47:34,729 | INFO     | intersect: 22874218998.24086
[2025-10-13 15:53:15] 2025-10-13 13:47:34,730 | INFO     | chi2: 0.7311894470244713
[2025-10-13 15:53:15] 2025-10-13 13:47:34,730 | INFO     | current chi2=0.7311894470244713 (change=0.59439703251157 %)
[2025-10-13 15:53:15] 2025-10-13 13:47:34,730 | INFO     | left removable region: 20
[2025-10-13 15:53:15] 2025-10-13 13:47:34,730 | INFO     | sum of square deviations: 1223016419.5
[2025-10-13 15:53:15] 2025-10-13 13:47:34,731 | INFO     | sum of deviations: -4005785118.500001
[2025-10-13 15:53:15] 2025-10-13 13:47:34,731 | INFO     | mean x: 1760357781.5
[2025-10-13 15:53:15] 2025-10-13 13:47:34,732 | INFO     | mean y: 2348487.006329114
[2025-10-13 15:53:15] 2025-10-13 13:47:34,732 | INFO     | -- intersect: 5768105096.595638
[2025-10-13 15:53:15] 2025-10-13 13:47:34,732 | INFO     | intersect: 5768105096.595638
[2025-10-13 15:53:15] 2025-10-13 13:47:34,732 | INFO     | chi2: 0.027010241360608665
[2025-10-13 15:53:15] 2025-10-13 13:47:34,733 | INFO     | -- intersect: 5768105096.595638
[2025-10-13 15:53:15] 2025-10-13 13:47:34,733 | INFO     | current memory leak: -3.28 B/s (using 158 data points, chi2=0.03)
[2025-10-13 15:53:15] 2025-10-13 13:47:34,733 | INFO     | could have reported an average CPU frequency of 2576 MHz (10 samples)
[2025-10-13 15:53:15] 2025-10-13 13:47:34,733 | INFO     | ..............................
[2025-10-13 15:53:15] 2025-10-13 13:47:34,734 | INFO     | . Timing measurements:
[2025-10-13 15:53:15] 2025-10-13 13:47:34,734 | INFO     | . get job = 0 s
[2025-10-13 15:53:15] 2025-10-13 13:47:34,734 | INFO     | . initial setup = 1 s
[2025-10-13 15:53:15] 2025-10-13 13:47:34,734 | INFO     | . payload setup = 5 s
[2025-10-13 15:53:15] 2025-10-13 13:47:34,734 | INFO     | . stage-in = 0 s
[2025-10-13 15:53:15] 2025-10-13 13:47:34,734 | INFO     | . payload execution = 11473 s
[2025-10-13 15:53:15] 2025-10-13 13:47:34,734 | INFO     | . stage-out = 1 s
[2025-10-13 15:53:15] 2025-10-13 13:47:34,735 | INFO     | . log creation = 0 s
[2025-10-13 15:53:15] 2025-10-13 13:47:34,735 | INFO     | ..............................
[2025-10-13 15:53:15] 2025-10-13 13:47:34,846 | INFO     | 
[2025-10-13 15:53:15] 2025-10-13 13:47:34,846 | INFO     | job summary report
[2025-10-13 15:53:15] 2025-10-13 13:47:34,846 | INFO     | --------------------------------------------------
[2025-10-13 15:53:15] 2025-10-13 13:47:34,846 | INFO     | PanDA job id: 6840081073
[2025-10-13 15:53:15] 2025-10-13 13:47:34,846 | INFO     | task id: 46676269
[2025-10-13 15:53:15] 2025-10-13 13:47:34,847 | INFO     | errors: (none)
[2025-10-13 15:53:15] 2025-10-13 13:47:34,847 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 15:53:15] 2025-10-13 13:47:34,847 | INFO     | pilot state: finished 
[2025-10-13 15:53:15] 2025-10-13 13:47:34,847 | INFO     | transexitcode: 0
[2025-10-13 15:53:15] 2025-10-13 13:47:34,847 | INFO     | exeerrorcode: 0
[2025-10-13 15:53:15] 2025-10-13 13:47:34,847 | INFO     | exeerrordiag: 
[2025-10-13 15:53:15] 2025-10-13 13:47:34,847 | INFO     | exitcode: 0
[2025-10-13 15:53:15] 2025-10-13 13:47:34,848 | INFO     | exitmsg: OK
[2025-10-13 15:53:15] 2025-10-13 13:47:34,848 | INFO     | cpuconsumptiontime: 44186 s
[2025-10-13 15:53:15] 2025-10-13 13:47:34,848 | INFO     | nevents: 400
[2025-10-13 15:53:15] 2025-10-13 13:47:34,848 | INFO     | neventsw: 0
[2025-10-13 15:53:15] 2025-10-13 13:47:34,848 | INFO     | pid: 3433407
[2025-10-13 15:53:15] 2025-10-13 13:47:34,848 | INFO     | pgrp: 3433407
[2025-10-13 15:53:15] 2025-10-13 13:47:34,848 | INFO     | corecount: 4
[2025-10-13 15:53:15] 2025-10-13 13:47:34,848 | INFO     | event service: False
[2025-10-13 15:53:15] 2025-10-13 13:47:34,849 | INFO     | sizes: {0: 2348697, 1: 2348896, 5: 2349158, 12: 2349214, 11483: 2378634, 11484: 2387838, 11492: 2387976}
[2025-10-13 15:53:15] 2025-10-13 13:47:34,849 | INFO     | --------------------------------------------------
[2025-10-13 15:53:15] 2025-10-13 13:47:34,849 | INFO     | 
[2025-10-13 15:53:15] 2025-10-13 13:47:34,849 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/0
[2025-10-13 15:53:15] 2025-10-13 13:47:34,868 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 15:53:15] 2025-10-13 13:47:34,868 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 15:53:15] 2025-10-13 13:47:34,868 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 15:53:15] 2025-10-13 13:47:34,869 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 15:53:15] 2025-10-13 13:47:34,869 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 15:53:15] 2025-10-13 13:47:34,869 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 15:53:15] 2025-10-13 13:47:34,869 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 15:53:15] 2025-10-13 13:47:34,869 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 15:53:15] 2025-10-13 13:47:34,869 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 15:53:15] 2025-10-13 13:47:34,869 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 15:53:15] 2025-10-13 13:47:34,870 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 15:53:15] 2025-10-13 13:47:34,870 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 15:53:15] 2025-10-13 13:47:34,870 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 15:53:15] 2025-10-13 13:47:34,870 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 15:53:15] 2025-10-13 13:47:34,870 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 15:53:15] 2025-10-13 13:47:34,870 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 15:53:15] 2025-10-13 13:47:34,870 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 15:53:15] 2025-10-13 13:47:34,871 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 15:53:15] 2025-10-13 13:47:34,871 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 15:53:15] 2025-10-13 13:47:34,871 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 15:53:15] 2025-10-13 13:47:34,871 | INFO     | job 6840081073 has completed (purged errors)
[2025-10-13 15:53:15] 2025-10-13 13:47:34,871 | INFO     | overall cleanup function is called
[2025-10-13 15:53:15] 2025-10-13 13:47:35,880 | INFO     | --- collectZombieJob: --- 10, [3433407]
[2025-10-13 15:53:15] 2025-10-13 13:47:35,880 | INFO     | zombie collector waiting for pid 3433407
[2025-10-13 15:53:15] 2025-10-13 13:47:35,880 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 15:53:15] 2025-10-13 13:47:35,880 | INFO     | collected zombie processes
[2025-10-13 15:53:15] 2025-10-13 13:47:35,880 | INFO     | will attempt to kill all subprocesses of pid=3433407
[2025-10-13 15:53:15] 2025-10-13 13:47:36,053 | INFO     | process IDs to be killed: [3433407] (in reverse order)
[2025-10-13 15:53:15] 2025-10-13 13:47:36,127 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 15:53:15] 2025-10-13 13:47:36,128 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 15:53:15] 2025-10-13 13:47:36,136 | INFO     | did not find any defunct processes belonging to 3433407
[2025-10-13 15:53:15] 2025-10-13 13:47:36,143 | INFO     | did not find any defunct processes belonging to 3433407
[2025-10-13 15:53:15] 2025-10-13 13:47:36,143 | INFO     | ready for new job
[2025-10-13 15:53:15] 2025-10-13 13:47:36,144 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 15:53:15] 2025-10-13 13:47:36,145 | INFO     | ***************************************
[2025-10-13 15:53:15] 2025-10-13 13:47:36,146 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 15:53:15] 2025-10-13 13:47:36,146 | INFO     | ***************************************
[2025-10-13 15:53:15] 2025-10-13 13:47:36,146 | INFO     | 
[2025-10-13 15:53:15] 2025-10-13 13:47:36,148 | INFO     | architecture information:
[2025-10-13 15:53:15] 2025-10-13 13:47:36,149 | INFO     | executing command: cat /etc/os-release
[2025-10-13 15:53:15] 2025-10-13 13:47:36,161 | INFO     | cat /etc/os-release:
[2025-10-13 15:53:15] NAME="CentOS Linux"
[2025-10-13 15:53:15] VERSION="7 (Core)"
[2025-10-13 15:53:15] ID="centos"
[2025-10-13 15:53:15] ID_LIKE="rhel fedora"
[2025-10-13 15:53:15] VERSION_ID="7"
[2025-10-13 15:53:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 15:53:15] ANSI_COLOR="0;31"
[2025-10-13 15:53:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 15:53:15] HOME_URL="https://www.centos.org/"
[2025-10-13 15:53:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 15:53:15] 
[2025-10-13 15:53:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 15:53:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 15:53:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 15:53:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 15:53:15] 
[2025-10-13 15:53:15] 2025-10-13 13:47:36,161 | INFO     | ***************************************
[2025-10-13 15:53:15] 2025-10-13 13:47:36,664 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/0
[2025-10-13 15:53:15] 2025-10-13 13:47:36,677 | INFO     | sufficient remaining disk space (1680194142208 B)
[2025-10-13 15:53:15] 2025-10-13 13:47:36,677 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 15:53:15] 2025-10-13 13:47:36,678 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 15:53:15] 2025-10-13 13:47:36,678 | INFO     | update_server=False
[2025-10-13 15:53:15] 2025-10-13 13:47:36,678 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 15:53:15] 2025-10-13 13:47:36,678 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:53:15] 2025-10-13 13:47:36,679 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:53:15] 2025-10-13 13:47:36,679 | INFO     | aborting loop
[2025-10-13 15:53:15] 2025-10-13 13:47:36,858 | INFO     | all job control threads have been joined
[2025-10-13 15:53:15] 2025-10-13 13:47:37,477 | INFO     | all data control threads have been joined
[2025-10-13 15:53:15] 2025-10-13 13:47:37,684 | INFO     | [job] retrieve thread has finished
[2025-10-13 15:53:15] 2025-10-13 13:47:37,684 | INFO     | [job] job monitor thread has finished
[2025-10-13 15:53:15] 2025-10-13 13:47:37,684 | INFO     | [job] queue monitor thread has finished
[2025-10-13 15:53:15] 2025-10-13 13:47:37,749 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 15:53:15] 2025-10-13 13:47:37,848 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 15:53:15] 2025-10-13 13:47:37,864 | INFO     | [job] control thread has finished
[2025-10-13 15:53:15] 2025-10-13 13:47:37,940 | INFO     | all payload control threads have been joined
[2025-10-13 15:53:15] 2025-10-13 13:47:38,044 | INFO     | [data] copytool_in thread has finished
[2025-10-13 15:53:15] 2025-10-13 13:47:38,196 | INFO     | [job] validate thread has finished
[2025-10-13 15:53:15] 2025-10-13 13:47:38,221 | INFO     | [payload] validate_post thread has finished
[2025-10-13 15:53:15] 2025-10-13 13:47:38,382 | INFO     | [payload] failed_post thread has finished
[2025-10-13 15:53:15] 2025-10-13 13:47:38,424 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 15:53:15] 2025-10-13 13:47:38,482 | INFO     | [data] control thread has finished
[2025-10-13 15:53:15] 2025-10-13 13:47:38,691 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 15:53:15] 2025-10-13 13:47:38,882 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 15:53:15] 2025-10-13 13:47:38,945 | INFO     | [payload] control thread has finished
[2025-10-13 15:53:15] 2025-10-13 13:47:39,754 | INFO     | [data] copytool_out thread has finished
[2025-10-13 15:53:15] 2025-10-13 13:47:41,854 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 15:53:15] 2025-10-13 13:47:46,980 | INFO     | job.realtimelogging is not enabled
[2025-10-13 15:53:15] 2025-10-13 13:47:47,986 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 15:53:15] 2025-10-13 13:48:05,644 | INFO     | [monitor] cgroup control has ended
[2025-10-13 15:53:15] 2025-10-13 13:48:05,788 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22662540453696)>', '<ExcThread(monitor, started 22662300530432)>']
[2025-10-13 15:53:15] 2025-10-13 13:48:06,336 | INFO     | PID=3426365 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 15:53:15] 2025-10-13 13:48:06,336 | INFO     | .. there are 2 such processes running
[2025-10-13 15:53:15] 2025-10-13 13:48:06,337 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 15:53:15] 2025-10-13 13:48:06,338 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 15:53:15] 2025-10-13 13:48:06,338 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 15:53:15] 2025-10-13 13:48:06,338 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 15:53:15] 2025-10-13 13:48:06,338 | INFO     | [monitor] control thread has ended
[2025-10-13 15:53:15] 2025-10-13 13:48:10,813 | INFO     | all workflow threads have been joined
[2025-10-13 15:53:15] 2025-10-13 13:48:10,813 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 15:53:15] 2025-10-13 13:48:10,813 | INFO     | traces error code: 0
[2025-10-13 15:53:15] 2025-10-13 13:48:10,814 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 15:53:15] 2025-10-13 13:48:10,951 [wrapper] ==== pilot stdout END ====
[2025-10-13 15:53:15] 2025-10-13 13:48:10,954 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 15:53:15] 2025-10-13 13:48:10,956 [wrapper] pilotpid: 3426365
[2025-10-13 15:53:15] 2025-10-13 13:48:10,959 [wrapper] Pilot exit status: 0
[2025-10-13 15:53:15] 2025-10-13 13:48:10,967 [wrapper] pandaids: 6840081073
[2025-10-13 15:53:15] 2025-10-13 13:48:11,020 [wrapper] cleanup supervisor_pilot 3614088 3426366
[2025-10-13 15:53:15] 2025-10-13 13:48:11,023 [wrapper] Test setup, not cleaning
[2025-10-13 15:53:15] 2025-10-13 13:48:11,026 [wrapper] apfmon messages muted
[2025-10-13 15:53:15] 2025-10-13 13:48:11,028 [wrapper] ==== wrapper stdout END ====
[2025-10-13 15:53:15] 2025-10-13 13:48:11,030 [wrapper] ==== wrapper stderr END ====
[2025-10-13 15:53:15]  *** Error codes and diagnostics ***
[2025-10-13 15:53:15]     "exeErrorCode": 0,
[2025-10-13 15:53:15]     "exeErrorDiag": "",
[2025-10-13 15:53:15]     "pilotErrorCode": 0,
[2025-10-13 15:53:15]     "pilotErrorDiag": "",
[2025-10-13 15:53:15]  *** Listing of results directory ***
[2025-10-13 15:53:15] total 417328
[2025-10-13 15:53:15] -rw-r--r-- 1 boinc boinc    557409 Oct 12 15:22 pilot3.tar.gz
[2025-10-13 15:53:15] -rwx------ 1 boinc boinc     36292 Oct 12 15:31 runpilot2-wrapper.sh
[2025-10-13 15:53:15] -rw-r--r-- 1 boinc boinc      5112 Oct 12 15:31 queuedata.json
[2025-10-13 15:53:15] -rw-r--r-- 1 boinc boinc       100 Oct 13 12:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 15:53:15] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 12:35 run_atlas
[2025-10-13 15:53:15] -rw-r--r-- 1 boinc boinc       105 Oct 13 12:35 job.xml
[2025-10-13 15:53:15] -rw-r--r-- 1 boinc boinc      6421 Oct 13 12:35 init_data.xml
[2025-10-13 15:53:15] -rw-r--r-- 2 boinc boinc 220100232 Oct 13 12:35 EVNT.46676267._003865.pool.root.1
[2025-10-13 15:53:15] -rw-r--r-- 2 boinc boinc     15120 Oct 13 12:35 start_atlas.sh
[2025-10-13 15:53:15] drwxrwx--x 2 boinc boinc      4096 Oct 13 12:35 shared
[2025-10-13 15:53:15] -rw-r--r-- 2 boinc boinc    569679 Oct 13 12:35 input.tar.gz
[2025-10-13 15:53:15] -rw-r--r-- 1 boinc boinc         0 Oct 13 12:35 boinc_lockfile
[2025-10-13 15:53:15] -rw-r--r-- 1 boinc boinc      2550 Oct 13 12:35 pandaJob.out
[2025-10-13 15:53:15] -rw------- 1 boinc boinc    972497 Oct 13 12:35 agis_schedconf.cvmfs.json
[2025-10-13 15:53:15] drwx------ 5 boinc boinc      4096 Oct 13 12:35 pilot3
[2025-10-13 15:53:15] -rw------- 1 boinc boinc 199342800 Oct 13 15:46 HITS.46676269._079445.pool.root.1
[2025-10-13 15:53:15] -rw-r--r-- 1 boinc boinc       528 Oct 13 15:47 boinc_task_state.xml
[2025-10-13 15:53:15] -rw------- 1 boinc boinc      1035 Oct 13 15:47 memory_monitor_summary.json
[2025-10-13 15:53:15] -rw------- 1 boinc boinc   1560580 Oct 13 15:47 agis_ddmendpoints.agis.ALL.json
[2025-10-13 15:53:15] -rw------- 1 boinc boinc    359923 Oct 13 15:47 log.46676269._079445.job.log.tgz.1
[2025-10-13 15:53:15] -rw------- 1 boinc boinc      7828 Oct 13 15:47 heartbeat.json
[2025-10-13 15:53:15] -rw------- 1 boinc boinc        95 Oct 13 15:48 pilot_heartbeat.json
[2025-10-13 15:53:15] -rw------- 1 boinc boinc      4906 Oct 13 15:48 pilotlog.txt
[2025-10-13 15:53:15] -rw------- 1 boinc boinc   1641030 Oct 13 15:48 log.46676269._079445.job.log.1
[2025-10-13 15:53:15] -rw------- 1 boinc boinc       357 Oct 13 15:48 output.list
[2025-10-13 15:53:15] -rw-r--r-- 1 boinc boinc       620 Oct 13 15:48 runtime_log
[2025-10-13 15:53:15] -rw------- 1 boinc boinc   2017280 Oct 13 15:48 result.tar.gz
[2025-10-13 15:53:15] -rw-r--r-- 1 boinc boinc      9070 Oct 13 15:48 runtime_log.err
[2025-10-13 15:53:15] -rw------- 1 boinc boinc       664 Oct 13 15:48 5YQKDmFMBS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmuzTMDmsoVqUn.diag
[2025-10-13 15:53:15] -rw-r--r-- 1 boinc boinc        27 Oct 13 15:53 wrapper_checkpoint.txt
[2025-10-13 15:53:15] -rw-r--r-- 1 boinc boinc      8192 Oct 13 15:53 boinc_mmap_file
[2025-10-13 15:53:15] -rw-r--r-- 1 boinc boinc     20653 Oct 13 15:53 stderr.txt
[2025-10-13 15:53:15] HITS file was successfully produced:
[2025-10-13 15:53:15] -rw------- 1 boinc boinc 199342800 Oct 13 15:46 shared/HITS.pool.root.1
[2025-10-13 15:53:15]  *** Contents of shared directory: ***
[2025-10-13 15:53:15] total 412172
[2025-10-13 15:53:15] -rw-r--r-- 2 boinc boinc 220100232 Oct 13 12:35 ATLAS.root_0
[2025-10-13 15:53:15] -rw-r--r-- 2 boinc boinc     15120 Oct 13 12:35 start_atlas.sh
[2025-10-13 15:53:15] -rw-r--r-- 2 boinc boinc    569679 Oct 13 12:35 input.tar.gz
[2025-10-13 15:53:15] -rw------- 1 boinc boinc 199342800 Oct 13 15:46 HITS.pool.root.1
[2025-10-13 15:53:15] -rw------- 1 boinc boinc   2017280 Oct 13 15:48 result.tar.gz
15:53:17 (3422641): run_atlas exited; CPU time 44631.991046
15:53:17 (3422641): called boinc_finish(0)

</stderr_txt>
]]>

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