Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:49:32 (20319): wrapper (7.7.26015): starting
12:49:32 (20319): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 12:49:32] Arguments: --nthreads 12
[2025-10-12 12:49:32] Threads: 12
[2025-10-12 12:49:32] Checking for CVMFS
[2025-10-12 12:49:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:49:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:49:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:49:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:49:32] 2.11.2.0 2979 223157 97524 151627 2 57 15392900 20275201 1 130560 1 108643900 99.984 13140717 12347 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 12:49:32] CVMFS is ok
[2025-10-12 12:49:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:49:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:49:32] Further information can be found at the LHC@home message board.
[2025-10-12 12:49:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:49:32] Checking for apptainer binary...
[2025-10-12 12:49:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:49:32] Running /usr/bin/apptainer --version
[2025-10-12 12:49:32] apptainer version 1.3.2-1.el7
[2025-10-12 12:49:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:49:34] c-205-21.aglt2.org
[2025-10-12 12:49:34] apptainer works
[2025-10-12 12:49:34] Set ATHENA_PROC_NUMBER=12
[2025-10-12 12:49:34] Set ATHENA_CORE_NUMBER=12
[2025-10-12 12:49:34] Starting ATLAS job with PandaID=6835980355
[2025-10-12 12:49:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 14:04:01]  *** The last 200 lines of the pilot log: ***
[2025-10-12 14:04:01]  storage_token=
[2025-10-12 14:04:01]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6835980355/log.46676269._004203.job.log.tgz.1
[2025-10-12 14:04:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/d8/log.46676269._004203.job.log.tgz.1
[2025-10-12 14:04:01]  workdir=None
[2025-10-12 14:04:01] ]
[2025-10-12 14:04:01] 2025-10-12 18:03:09,977 | INFO     | transferring file log.46676269._004203.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6835980355/log.46676269._004203.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 14:04:01] 2025-10-12 18:03:09,977 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6835980355/log.46676269._004203.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._004203.job
[2025-10-12 14:04:01] 2025-10-12 18:03:10,000 | INFO     | adding to output.list: log.46676269._004203.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/20/d8/log.46676269._004203.job.log.tg
[2025-10-12 14:04:01] 2025-10-12 18:03:10,001 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 14:04:01] 2025-10-12 18:03:10,001 | INFO     | summary of transferred files:
[2025-10-12 14:04:01] 2025-10-12 18:03:10,001 | INFO     |  -- lfn=log.46676269._004203.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 14:04:01] 2025-10-12 18:03:10,001 | INFO     | stage-out finished correctly
[2025-10-12 14:04:01] 2025-10-12 18:03:11,547 | INFO     | time since job start (4402s) is within the limit (172800.0s)
[2025-10-12 14:04:01] 2025-10-12 18:03:12,015 | INFO     | monitor loop #329: job 0:6835980355 is in state 'finished'
[2025-10-12 14:04:01] 2025-10-12 18:03:12,016 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:04:01] 2025-10-12 18:03:12,933 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 14:04:01] 2025-10-12 18:03:13,552 | INFO     | time since job start (4404s) is within the limit (172800.0s)
[2025-10-12 14:04:01] 2025-10-12 18:03:14,527 | INFO     | monitor loop #330: job 0:6835980355 is in state 'finished'
[2025-10-12 14:04:01] 2025-10-12 18:03:14,528 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:04:01] 2025-10-12 18:03:15,558 | INFO     | time since job start (4406s) is within the limit (172800.0s)
[2025-10-12 14:04:01] 2025-10-12 18:03:15,887 | INFO     | job 6835980355 has state=finished
[2025-10-12 14:04:01] 2025-10-12 18:03:15,887 | INFO     | preparing for final server update for job 6835980355 in state='finished'
[2025-10-12 14:04:01] 2025-10-12 18:03:15,888 | INFO     | this job has now completed (state=finished)
[2025-10-12 14:04:01] 2025-10-12 18:03:15,888 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 14:04:01] 2025-10-12 18:03:15,888 | INFO     | log transfer has been attempted: DONE
[2025-10-12 14:04:01] 2025-10-12 18:03:15,888 | INFO     | job 6835980355 has finished - writing final server update
[2025-10-12 14:04:01] 2025-10-12 18:03:15,889 | INFO     | total number of processed events: 400 (read)
[2025-10-12 14:04:01] 2025-10-12 18:03:15,889 | INFO     | executing command: lscpu
[2025-10-12 14:04:01] 2025-10-12 18:03:15,915 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 14:04:01] 2025-10-12 18:03:17,031 | INFO     | monitor loop #331: job 0:6835980355 is in state 'finished'
[2025-10-12 14:04:01] 2025-10-12 18:03:17,031 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:04:01] 2025-10-12 18:03:17,564 | INFO     | time since job start (4408s) is within the limit (172800.0s)
[2025-10-12 14:04:01] 2025-10-12 18:03:19,545 | INFO     | monitor loop #332: job 0:6835980355 is in state 'finished'
[2025-10-12 14:04:01] 2025-10-12 18:03:19,545 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:04:01] 2025-10-12 18:03:19,566 | INFO     | time since job start (4410s) is within the limit (172800.0s)
[2025-10-12 14:04:01] 2025-10-12 18:03:21,571 | INFO     | time since job start (4412s) is within the limit (172800.0s)
[2025-10-12 14:04:01] 2025-10-12 18:03:21,800 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 14:04:01] 2025-10-12 18:03:21,804 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-12 14:04:01] 2025-10-12 18:03:21,807 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6835980355/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 14:04:01] 2025-10-12 18:03:21,808 | INFO     | extracted standard info from prmon json
[2025-10-12 14:04:01] 2025-10-12 18:03:21,808 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 14:04:01] 2025-10-12 18:03:21,808 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 14:04:01] 2025-10-12 18:03:21,809 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 14:04:01] 2025-10-12 18:03:21,809 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 14:04:01] 2025-10-12 18:03:21,811 | INFO     | fitting pss+swap vs Time
[2025-10-12 14:04:01] 2025-10-12 18:03:21,811 | INFO     | sum of square deviations: 85136480.0
[2025-10-12 14:04:01] 2025-10-12 18:03:21,812 | INFO     | sum of deviations: -6766083034.0
[2025-10-12 14:04:01] 2025-10-12 18:03:21,812 | INFO     | mean x: 1760290075.0
[2025-10-12 14:04:01] 2025-10-12 18:03:21,812 | INFO     | mean y: 2765361.6153846155
[2025-10-12 14:04:01] 2025-10-12 18:03:21,812 | INFO     | -- intersect: 139898951008.19235
[2025-10-12 14:04:01] 2025-10-12 18:03:21,812 | INFO     | intersect: 139898951008.19235
[2025-10-12 14:04:01] 2025-10-12 18:03:21,812 | INFO     | chi2: 0.05195755885556809
[2025-10-12 14:04:01] 2025-10-12 18:03:21,812 | INFO     | -- intersect: 139898951008.19235
[2025-10-12 14:04:01] 2025-10-12 18:03:21,812 | INFO     | current memory leak: -79.47 B/s (using 65 data points, chi2=0.05)
[2025-10-12 14:04:01] 2025-10-12 18:03:21,813 | INFO     | could have reported an average CPU frequency of 2030 MHz (6 samples)
[2025-10-12 14:04:01] 2025-10-12 18:03:21,813 | INFO     | ..............................
[2025-10-12 14:04:01] 2025-10-12 18:03:21,813 | INFO     | . Timing measurements:
[2025-10-12 14:04:01] 2025-10-12 18:03:21,813 | INFO     | . get job = 0 s
[2025-10-12 14:04:01] 2025-10-12 18:03:21,813 | INFO     | . initial setup = 2 s
[2025-10-12 14:04:01] 2025-10-12 18:03:21,813 | INFO     | . payload setup = 7 s
[2025-10-12 14:04:01] 2025-10-12 18:03:21,814 | INFO     | . stage-in = 0 s
[2025-10-12 14:04:01] 2025-10-12 18:03:21,814 | INFO     | . payload execution = 4373 s
[2025-10-12 14:04:01] 2025-10-12 18:03:21,814 | INFO     | . stage-out = 0 s
[2025-10-12 14:04:01] 2025-10-12 18:03:21,814 | INFO     | . log creation = 0 s
[2025-10-12 14:04:01] 2025-10-12 18:03:21,814 | INFO     | ..............................
[2025-10-12 14:04:01] 2025-10-12 18:03:22,204 | INFO     | 
[2025-10-12 14:04:01] 2025-10-12 18:03:22,204 | INFO     | job summary report
[2025-10-12 14:04:01] 2025-10-12 18:03:22,212 | INFO     | --------------------------------------------------
[2025-10-12 14:04:01] 2025-10-12 18:03:22,212 | INFO     | PanDA job id: 6835980355
[2025-10-12 14:04:01] 2025-10-12 18:03:22,212 | INFO     | task id: 46676269
[2025-10-12 14:04:01] 2025-10-12 18:03:22,213 | INFO     | errors: (none)
[2025-10-12 14:04:01] 2025-10-12 18:03:22,213 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 14:04:01] 2025-10-12 18:03:22,213 | INFO     | pilot state: finished 
[2025-10-12 14:04:01] 2025-10-12 18:03:22,213 | INFO     | transexitcode: 0
[2025-10-12 14:04:01] 2025-10-12 18:03:22,213 | INFO     | exeerrorcode: 0
[2025-10-12 14:04:01] 2025-10-12 18:03:22,213 | INFO     | exeerrordiag: 
[2025-10-12 14:04:01] 2025-10-12 18:03:22,213 | INFO     | exitcode: 0
[2025-10-12 14:04:01] 2025-10-12 18:03:22,213 | INFO     | exitmsg: OK
[2025-10-12 14:04:01] 2025-10-12 18:03:22,214 | INFO     | cpuconsumptiontime: 47049 s
[2025-10-12 14:04:01] 2025-10-12 18:03:22,214 | INFO     | nevents: 400
[2025-10-12 14:04:01] 2025-10-12 18:03:22,214 | INFO     | neventsw: 0
[2025-10-12 14:04:01] 2025-10-12 18:03:22,214 | INFO     | pid: 31591
[2025-10-12 14:04:01] 2025-10-12 18:03:22,214 | INFO     | pgrp: 31591
[2025-10-12 14:04:01] 2025-10-12 18:03:22,214 | INFO     | corecount: 12
[2025-10-12 14:04:01] 2025-10-12 18:03:22,214 | INFO     | event service: False
[2025-10-12 14:04:01] 2025-10-12 18:03:22,214 | INFO     | sizes: {0: 2348852, 5: 2349114, 11: 2349170, 4383: 2375244, 4384: 2384242, 4387: 2384298, 4396: 2384620}
[2025-10-12 14:04:01] 2025-10-12 18:03:22,215 | INFO     | --------------------------------------------------
[2025-10-12 14:04:01] 2025-10-12 18:03:22,215 | INFO     | 
[2025-10-12 14:04:01] 2025-10-12 18:03:22,215 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 14:04:01] 2025-10-12 18:03:22,238 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 14:04:01] 2025-10-12 18:03:22,239 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 14:04:01] 2025-10-12 18:03:22,239 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 14:04:01] 2025-10-12 18:03:22,239 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 14:04:01] 2025-10-12 18:03:22,239 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 14:04:01] 2025-10-12 18:03:22,239 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 14:04:01] 2025-10-12 18:03:22,239 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 14:04:01] 2025-10-12 18:03:22,240 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 14:04:01] 2025-10-12 18:03:22,240 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 14:04:01] 2025-10-12 18:03:22,240 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 14:04:01] 2025-10-12 18:03:22,240 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 14:04:01] 2025-10-12 18:03:22,240 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 14:04:01] 2025-10-12 18:03:22,240 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 14:04:01] 2025-10-12 18:03:22,241 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 14:04:01] 2025-10-12 18:03:22,241 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 14:04:01] 2025-10-12 18:03:22,241 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 14:04:01] 2025-10-12 18:03:22,241 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 14:04:01] 2025-10-12 18:03:22,241 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 14:04:01] 2025-10-12 18:03:22,241 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 14:04:01] 2025-10-12 18:03:22,242 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 14:04:01] 2025-10-12 18:03:22,242 | INFO     | job 6835980355 has completed (purged errors)
[2025-10-12 14:04:01] 2025-10-12 18:03:22,242 | INFO     | overall cleanup function is called
[2025-10-12 14:04:01] 2025-10-12 18:03:23,250 | INFO     | --- collectZombieJob: --- 10, [31591]
[2025-10-12 14:04:01] 2025-10-12 18:03:23,250 | INFO     | zombie collector waiting for pid 31591
[2025-10-12 14:04:01] 2025-10-12 18:03:23,250 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 14:04:01] 2025-10-12 18:03:23,251 | INFO     | collected zombie processes
[2025-10-12 14:04:01] 2025-10-12 18:03:23,251 | INFO     | will attempt to kill all subprocesses of pid=31591
[2025-10-12 14:04:01] 2025-10-12 18:03:23,346 | INFO     | process IDs to be killed: [31591] (in reverse order)
[2025-10-12 14:04:01] 2025-10-12 18:03:23,398 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 14:04:01] 2025-10-12 18:03:23,398 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 14:04:01] 2025-10-12 18:03:23,401 | INFO     | did not find any defunct processes belonging to 31591
[2025-10-12 14:04:01] 2025-10-12 18:03:23,403 | INFO     | did not find any defunct processes belonging to 31591
[2025-10-12 14:04:01] 2025-10-12 18:03:23,404 | INFO     | ready for new job
[2025-10-12 14:04:01] 2025-10-12 18:03:23,404 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 14:04:01] 2025-10-12 18:03:23,405 | INFO     | ***************************************
[2025-10-12 14:04:01] 2025-10-12 18:03:23,405 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 14:04:01] 2025-10-12 18:03:23,405 | INFO     | ***************************************
[2025-10-12 14:04:01] 2025-10-12 18:03:23,405 | INFO     | 
[2025-10-12 14:04:01] 2025-10-12 18:03:23,406 | INFO     | architecture information:
[2025-10-12 14:04:01] 2025-10-12 18:03:23,406 | INFO     | executing command: cat /etc/os-release
[2025-10-12 14:04:01] 2025-10-12 18:03:23,421 | INFO     | cat /etc/os-release:
[2025-10-12 14:04:01] NAME="CentOS Linux"
[2025-10-12 14:04:01] VERSION="7 (Core)"
[2025-10-12 14:04:01] ID="centos"
[2025-10-12 14:04:01] ID_LIKE="rhel fedora"
[2025-10-12 14:04:01] VERSION_ID="7"
[2025-10-12 14:04:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 14:04:01] ANSI_COLOR="0;31"
[2025-10-12 14:04:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 14:04:01] HOME_URL="https://www.centos.org/"
[2025-10-12 14:04:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 14:04:01] 
[2025-10-12 14:04:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 14:04:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 14:04:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 14:04:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 14:04:01] 
[2025-10-12 14:04:01] 2025-10-12 18:03:23,421 | INFO     | ***************************************
[2025-10-12 14:04:01] 2025-10-12 18:03:23,923 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 14:04:01] 2025-10-12 18:03:23,940 | INFO     | sufficient remaining disk space (29365370880 B)
[2025-10-12 14:04:01] 2025-10-12 18:03:23,940 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 14:04:01] 2025-10-12 18:03:23,941 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 14:04:01] 2025-10-12 18:03:23,941 | INFO     | update_server=False
[2025-10-12 14:04:01] 2025-10-12 18:03:23,941 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 14:04:01] 2025-10-12 18:03:23,941 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 14:04:01] 2025-10-12 18:03:23,942 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:04:01] 2025-10-12 18:03:23,942 | INFO     | aborting loop
[2025-10-12 14:04:01] 2025-10-12 18:03:23,942 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 14:04:01] 2025-10-12 18:03:24,796 | INFO     | all data control threads have been joined
[2025-10-12 14:04:01] 2025-10-12 18:03:24,946 | INFO     | [job] retrieve thread has finished
[2025-10-12 14:04:01] 2025-10-12 18:03:24,947 | INFO     | [job] job monitor thread has finished
[2025-10-12 14:04:01] 2025-10-12 18:03:25,013 | INFO     | [job] validate thread has finished
[2025-10-12 14:04:01] 2025-10-12 18:03:25,166 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 14:04:01] 2025-10-12 18:03:25,317 | INFO     | all payload control threads have been joined
[2025-10-12 14:04:01] 2025-10-12 18:03:25,321 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 14:04:01] 2025-10-12 18:03:25,479 | INFO     | all job control threads have been joined
[2025-10-12 14:04:01] 2025-10-12 18:03:25,707 | INFO     | [data] copytool_in thread has finished
[2025-10-12 14:04:01] 2025-10-12 18:03:25,757 | INFO     | [payload] validate_post thread has finished
[2025-10-12 14:04:01] 2025-10-12 18:03:25,797 | INFO     | [data] control thread has finished
[2025-10-12 14:04:01] 2025-10-12 18:03:25,948 | INFO     | [data] copytool_out thread has finished
[2025-10-12 14:04:01] 2025-10-12 18:03:26,170 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 14:04:01] 2025-10-12 18:03:26,323 | INFO     | [payload] control thread has finished
[2025-10-12 14:04:01] 2025-10-12 18:03:26,415 | INFO     | [payload] failed_post thread has finished
[2025-10-12 14:04:01] 2025-10-12 18:03:26,485 | INFO     | [job] control thread has finished
[2025-10-12 14:04:01] 2025-10-12 18:03:26,901 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:04:01] 2025-10-12 18:03:27,906 | INFO     | [job] queue monitor thread has finished
[2025-10-12 14:04:01] 2025-10-12 18:03:27,947 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 14:04:01] 2025-10-12 18:03:34,918 | INFO     | job.realtimelogging is not enabled
[2025-10-12 14:04:01] 2025-10-12 18:03:35,923 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 14:04:01] 2025-10-12 18:03:54,777 | INFO     | PID=23997 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 14:04:01] 2025-10-12 18:03:54,779 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 14:04:01] 2025-10-12 18:03:54,779 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 14:04:01] 2025-10-12 18:03:54,779 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 14:04:01] 2025-10-12 18:03:55,536 | INFO     | [monitor] cgroup control has ended
[2025-10-12 14:04:01] 2025-10-12 18:03:56,123 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139952553809728)>', '<ExcThread(monitor, started 139952326469376)>']
[2025-10-12 14:04:01] 2025-10-12 18:03:56,784 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 14:04:01] 2025-10-12 18:03:56,785 | INFO     | [monitor] control thread has ended
[2025-10-12 14:04:01] 2025-10-12 18:04:01,149 | INFO     | all workflow threads have been joined
[2025-10-12 14:04:01] 2025-10-12 18:04:01,149 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 14:04:01] 2025-10-12 18:04:01,150 | INFO     | traces error code: 0
[2025-10-12 14:04:01] 2025-10-12 18:04:01,150 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 14:04:01] 2025-10-12 18:04:01,247 [wrapper] ==== pilot stdout END ====
[2025-10-12 14:04:01] 2025-10-12 18:04:01,251 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 14:04:01] 2025-10-12 18:04:01,255 [wrapper] pilotpid: 23997
[2025-10-12 14:04:01] 2025-10-12 18:04:01,259 [wrapper] Pilot exit status: 0
[2025-10-12 14:04:01] 2025-10-12 18:04:01,277 [wrapper] pandaids: 6835980355
[2025-10-12 14:04:01] 2025-10-12 18:04:01,319 [wrapper] cleanup supervisor_pilot 13981 23998
[2025-10-12 14:04:01] 2025-10-12 18:04:01,323 [wrapper] Test setup, not cleaning
[2025-10-12 14:04:01] 2025-10-12 18:04:01,327 [wrapper] apfmon messages muted
[2025-10-12 14:04:01] 2025-10-12 18:04:01,331 [wrapper] ==== wrapper stdout END ====
[2025-10-12 14:04:01] 2025-10-12 18:04:01,335 [wrapper] ==== wrapper stderr END ====
[2025-10-12 14:04:01]  *** Error codes and diagnostics ***
[2025-10-12 14:04:01]     "exeErrorCode": 0,
[2025-10-12 14:04:01]     "exeErrorDiag": "",
[2025-10-12 14:04:01]     "pilotErrorCode": 0,
[2025-10-12 14:04:01]     "pilotErrorDiag": "",
[2025-10-12 14:04:01]  *** Listing of results directory ***
[2025-10-12 14:04:01] total 411104
[2025-10-12 14:04:01] -rw-r--r-- 1 boincer umatlas    557409 Oct  8 05:48 pilot3.tar.gz
[2025-10-12 14:04:01] -rwx------ 1 boincer umatlas     36292 Oct  8 05:54 runpilot2-wrapper.sh
[2025-10-12 14:04:01] -rw-r--r-- 1 boincer umatlas      5112 Oct  8 05:55 queuedata.json
[2025-10-12 14:04:01] -rw-r--r-- 1 boincer umatlas       100 Oct 12 12:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 14:04:01] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 12:49 run_atlas
[2025-10-12 14:04:01] -rw-r--r-- 1 boincer umatlas       105 Oct 12 12:49 job.xml
[2025-10-12 14:04:01] -rw-r--r-- 2 boincer umatlas 219300512 Oct 12 12:49 EVNT.46676267._000169.pool.root.1
[2025-10-12 14:04:01] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:49 start_atlas.sh
[2025-10-12 14:04:01] drwxrwx--x 2 boincer umatlas      4096 Oct 12 12:49 shared
[2025-10-12 14:04:01] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 12:49 input.tar.gz
[2025-10-12 14:04:01] -rw-r--r-- 1 boincer umatlas         0 Oct 12 12:49 boinc_lockfile
[2025-10-12 14:04:01] -rw-r--r-- 1 boincer umatlas      2548 Oct 12 12:49 pandaJob.out
[2025-10-12 14:04:01] -rw------- 1 boincer umatlas    975528 Oct 12 12:49 agis_schedconf.cvmfs.json
[2025-10-12 14:04:01] -rw------- 1 boincer umatlas   1560580 Oct 12 12:49 agis_ddmendpoints.agis.ALL.json
[2025-10-12 14:04:01] drwx------ 5 boincer umatlas      4096 Oct 12 12:49 pilot3
[2025-10-12 14:04:01] -rw------- 1 boincer umatlas 195691042 Oct 12 14:02 HITS.46676269._004203.pool.root.1
[2025-10-12 14:04:01] -rw-r--r-- 1 boincer umatlas       529 Oct 12 14:02 boinc_task_state.xml
[2025-10-12 14:04:01] -rw------- 1 boincer umatlas      1048 Oct 12 14:03 memory_monitor_summary.json
[2025-10-12 14:04:01] -rw------- 1 boincer umatlas    396666 Oct 12 14:03 log.46676269._004203.job.log.tgz.1
[2025-10-12 14:04:01] -rw------- 1 boincer umatlas      7855 Oct 12 14:03 heartbeat.json
[2025-10-12 14:04:01] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 14:03 init_data.xml
[2025-10-12 14:04:01] -rw-r--r-- 1 boincer umatlas        27 Oct 12 14:03 wrapper_checkpoint.txt
[2025-10-12 14:04:01] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 14:03 boinc_mmap_file
[2025-10-12 14:04:01] -rw------- 1 boincer umatlas        95 Oct 12 14:03 pilot_heartbeat.json
[2025-10-12 14:04:01] -rw------- 1 boincer umatlas      4818 Oct 12 14:04 pilotlog.txt
[2025-10-12 14:04:01] -rw------- 1 boincer umatlas    640998 Oct 12 14:04 log.46676269._004203.job.log.1
[2025-10-12 14:04:01] -rw------- 1 boincer umatlas       357 Oct 12 14:04 output.list
[2025-10-12 14:04:01] -rw-r--r-- 1 boincer umatlas       620 Oct 12 14:04 runtime_log
[2025-10-12 14:04:01] -rw------- 1 boincer umatlas   1054720 Oct 12 14:04 result.tar.gz
[2025-10-12 14:04:01] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 14:04 runtime_log.err
[2025-10-12 14:04:01] -rw------- 1 boincer umatlas       659 Oct 12 14:04 dYINDm03fQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUrXNDmyi7omn.diag
[2025-10-12 14:04:01] -rw-r--r-- 1 boincer umatlas     22152 Oct 12 14:04 stderr.txt
[2025-10-12 14:04:01] HITS file was successfully produced:
[2025-10-12 14:04:01] -rw------- 1 boincer umatlas 195691042 Oct 12 14:02 shared/HITS.pool.root.1
[2025-10-12 14:04:01]  *** Contents of shared directory: ***
[2025-10-12 14:04:01] total 406884
[2025-10-12 14:04:01] -rw-r--r-- 2 boincer umatlas 219300512 Oct 12 12:49 ATLAS.root_0
[2025-10-12 14:04:01] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:49 start_atlas.sh
[2025-10-12 14:04:01] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 12:49 input.tar.gz
[2025-10-12 14:04:01] -rw------- 1 boincer umatlas 195691042 Oct 12 14:02 HITS.pool.root.1
[2025-10-12 14:04:01] -rw------- 1 boincer umatlas   1054720 Oct 12 14:04 result.tar.gz
14:04:03 (20319): run_atlas exited; CPU time 47019.032596
14:04:03 (20319): called boinc_finish(0)

</stderr_txt>
]]>

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