Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:55:51 (14551): wrapper (7.7.26015): starting
12:55:51 (14551): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 12:55:51] Arguments: --nthreads 12
[2025-10-12 12:55:51] Threads: 12
[2025-10-12 12:55:51] Checking for CVMFS
[2025-10-12 12:55:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:55:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:55:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:55:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:55:51] 2.11.2.0 2998 38862 88584 151627 2 57 14997523 20275200 1 130560 0 24288986 99.990 1266886 44947 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 12:55:51] CVMFS is ok
[2025-10-12 12:55:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:55:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:55:51] Further information can be found at the LHC@home message board.
[2025-10-12 12:55:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:55:51] Checking for apptainer binary...
[2025-10-12 12:55:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:55:51] Running /usr/bin/apptainer --version
[2025-10-12 12:55:51] apptainer version 1.3.2-1.el7
[2025-10-12 12:55:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:55:52] c-205-12.aglt2.org
[2025-10-12 12:55:52] apptainer works
[2025-10-12 12:55:52] Set ATHENA_PROC_NUMBER=12
[2025-10-12 12:55:52] Set ATHENA_CORE_NUMBER=12
[2025-10-12 12:55:52] Starting ATLAS job with PandaID=6840080997
[2025-10-12 12:55:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 14:07:30]  *** The last 200 lines of the pilot log: ***
[2025-10-12 14:07:30]  lfn=log.46676269._079369.job.log.tgz.1
[2025-10-12 14:07:30]  mtime=0
[2025-10-12 14:07:30]  protocol_id=None
[2025-10-12 14:07:30]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 14:07:30]  replicas=None
[2025-10-12 14:07:30]  scope=mc23_13p6TeV
[2025-10-12 14:07:30]  status=None
[2025-10-12 14:07:30]  status_code=0
[2025-10-12 14:07:30]  storage_token=
[2025-10-12 14:07:30]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840080997/log.46676269._079369.job.log.tgz.1
[2025-10-12 14:07:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0c/d2/log.46676269._079369.job.log.tgz.1
[2025-10-12 14:07:30]  workdir=None
[2025-10-12 14:07:30] ]
[2025-10-12 14:07:30] 2025-10-12 18:06:52,872 | INFO     | transferring file log.46676269._079369.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840080997/log.46676269._079369.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 14:07:30] 2025-10-12 18:06:52,872 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840080997/log.46676269._079369.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._079369.job
[2025-10-12 14:07:30] 2025-10-12 18:06:52,896 | INFO     | adding to output.list: log.46676269._079369.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0c/d2/log.46676269._079369.job.log.tg
[2025-10-12 14:07:30] 2025-10-12 18:06:52,897 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 14:07:30] 2025-10-12 18:06:52,898 | INFO     | summary of transferred files:
[2025-10-12 14:07:30] 2025-10-12 18:06:52,898 | INFO     |  -- lfn=log.46676269._079369.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 14:07:30] 2025-10-12 18:06:52,898 | INFO     | stage-out finished correctly
[2025-10-12 14:07:30] 2025-10-12 18:06:53,262 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 14:07:30] 2025-10-12 18:06:53,322 | INFO     | time since job start (4246s) is within the limit (172800.0s)
[2025-10-12 14:07:30] 2025-10-12 18:06:53,392 | INFO     | job 6840080997 has state=finished
[2025-10-12 14:07:30] 2025-10-12 18:06:53,392 | INFO     | preparing for final server update for job 6840080997 in state='finished'
[2025-10-12 14:07:30] 2025-10-12 18:06:53,393 | INFO     | this job has now completed (state=finished)
[2025-10-12 14:07:30] 2025-10-12 18:06:53,393 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 14:07:30] 2025-10-12 18:06:53,393 | INFO     | log transfer has been attempted: DONE
[2025-10-12 14:07:30] 2025-10-12 18:06:53,393 | INFO     | job 6840080997 has finished - writing final server update
[2025-10-12 14:07:30] 2025-10-12 18:06:53,394 | INFO     | total number of processed events: 400 (read)
[2025-10-12 14:07:30] 2025-10-12 18:06:53,395 | INFO     | executing command: lscpu
[2025-10-12 14:07:30] 2025-10-12 18:06:53,422 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 14:07:30] 2025-10-12 18:06:55,327 | INFO     | time since job start (4248s) is within the limit (172800.0s)
[2025-10-12 14:07:30] 2025-10-12 18:06:56,697 | WARNING  | process 24630 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 14:07:30] 2025-10-12 18:06:56,697 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840080997/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 14:07:30] 2025-10-12 18:06:56,787 | INFO     | number of running child processes to parent process 24630: 1
[2025-10-12 14:07:30] 2025-10-12 18:06:56,787 | INFO     | maximum number of monitored processes: 6
[2025-10-12 14:07:30] 2025-10-12 18:06:57,333 | INFO     | time since job start (4250s) is within the limit (172800.0s)
[2025-10-12 14:07:30] 2025-10-12 18:06:58,284 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 14:07:30] 2025-10-12 18:06:58,287 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-12 14:07:30] 2025-10-12 18:06:58,290 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840080997/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 14:07:30] 2025-10-12 18:06:58,291 | INFO     | extracted standard info from prmon json
[2025-10-12 14:07:30] 2025-10-12 18:06:58,291 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 14:07:30] 2025-10-12 18:06:58,291 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 14:07:30] 2025-10-12 18:06:58,291 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 14:07:30] 2025-10-12 18:06:58,291 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 14:07:30] 2025-10-12 18:06:58,293 | INFO     | fitting pss+swap vs Time
[2025-10-12 14:07:30] 2025-10-12 18:06:58,293 | INFO     | sum of square deviations: 77515872.0
[2025-10-12 14:07:30] 2025-10-12 18:06:58,293 | INFO     | sum of deviations: -4425337597.999999
[2025-10-12 14:07:30] 2025-10-12 18:06:58,293 | INFO     | mean x: 1760290392.0
[2025-10-12 14:07:30] 2025-10-12 18:06:58,293 | INFO     | mean y: 2748853.4444444445
[2025-10-12 14:07:30] 2025-10-12 18:06:58,293 | INFO     | -- intersect: 100496738718.07187
[2025-10-12 14:07:30] 2025-10-12 18:06:58,294 | INFO     | intersect: 100496738718.07187
[2025-10-12 14:07:30] 2025-10-12 18:06:58,294 | INFO     | chi2: 0.04705821299095566
[2025-10-12 14:07:30] 2025-10-12 18:06:58,294 | INFO     | -- intersect: 100496738718.07187
[2025-10-12 14:07:30] 2025-10-12 18:06:58,294 | INFO     | current memory leak: -57.09 B/s (using 63 data points, chi2=0.05)
[2025-10-12 14:07:30] 2025-10-12 18:06:58,294 | INFO     | could have reported an average CPU frequency of 2050 MHz (6 samples)
[2025-10-12 14:07:30] 2025-10-12 18:06:58,294 | INFO     | ..............................
[2025-10-12 14:07:30] 2025-10-12 18:06:58,295 | INFO     | . Timing measurements:
[2025-10-12 14:07:30] 2025-10-12 18:06:58,295 | INFO     | . get job = 0 s
[2025-10-12 14:07:30] 2025-10-12 18:06:58,295 | INFO     | . initial setup = 2 s
[2025-10-12 14:07:30] 2025-10-12 18:06:58,295 | INFO     | . payload setup = 7 s
[2025-10-12 14:07:30] 2025-10-12 18:06:58,295 | INFO     | . stage-in = 0 s
[2025-10-12 14:07:30] 2025-10-12 18:06:58,295 | INFO     | . payload execution = 4216 s
[2025-10-12 14:07:30] 2025-10-12 18:06:58,295 | INFO     | . stage-out = 0 s
[2025-10-12 14:07:30] 2025-10-12 18:06:58,295 | INFO     | . log creation = 0 s
[2025-10-12 14:07:30] 2025-10-12 18:06:58,295 | INFO     | ..............................
[2025-10-12 14:07:30] 2025-10-12 18:06:58,377 | INFO     | 
[2025-10-12 14:07:30] 2025-10-12 18:06:58,378 | INFO     | job summary report
[2025-10-12 14:07:30] 2025-10-12 18:06:58,378 | INFO     | --------------------------------------------------
[2025-10-12 14:07:30] 2025-10-12 18:06:58,378 | INFO     | PanDA job id: 6840080997
[2025-10-12 14:07:30] 2025-10-12 18:06:58,378 | INFO     | task id: 46676269
[2025-10-12 14:07:30] 2025-10-12 18:06:58,378 | INFO     | errors: (none)
[2025-10-12 14:07:30] 2025-10-12 18:06:58,379 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 14:07:30] 2025-10-12 18:06:58,379 | INFO     | pilot state: finished 
[2025-10-12 14:07:30] 2025-10-12 18:06:58,379 | INFO     | transexitcode: 0
[2025-10-12 14:07:30] 2025-10-12 18:06:58,379 | INFO     | exeerrorcode: 0
[2025-10-12 14:07:30] 2025-10-12 18:06:58,379 | INFO     | exeerrordiag: 
[2025-10-12 14:07:30] 2025-10-12 18:06:58,379 | INFO     | exitcode: 0
[2025-10-12 14:07:30] 2025-10-12 18:06:58,380 | INFO     | exitmsg: OK
[2025-10-12 14:07:30] 2025-10-12 18:06:58,380 | INFO     | cpuconsumptiontime: 45347 s
[2025-10-12 14:07:30] 2025-10-12 18:06:58,380 | INFO     | nevents: 400
[2025-10-12 14:07:30] 2025-10-12 18:06:58,380 | INFO     | neventsw: 0
[2025-10-12 14:07:30] 2025-10-12 18:06:58,380 | INFO     | pid: 24630
[2025-10-12 14:07:30] 2025-10-12 18:06:58,380 | INFO     | pgrp: 24630
[2025-10-12 14:07:30] 2025-10-12 18:06:58,380 | INFO     | corecount: 12
[2025-10-12 14:07:30] 2025-10-12 18:06:58,380 | INFO     | event service: False
[2025-10-12 14:07:30] 2025-10-12 18:06:58,381 | INFO     | sizes: {0: 2348857, 1: 2348857, 5: 2349147, 11: 2349203, 4227: 2375100, 4229: 2384282, 4234: 2384420}
[2025-10-12 14:07:30] 2025-10-12 18:06:58,381 | INFO     | --------------------------------------------------
[2025-10-12 14:07:30] 2025-10-12 18:06:58,381 | INFO     | 
[2025-10-12 14:07:30] 2025-10-12 18:06:58,381 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 14:07:30] 2025-10-12 18:06:58,406 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 14:07:30] 2025-10-12 18:06:58,406 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 14:07:30] 2025-10-12 18:06:58,406 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 14:07:30] 2025-10-12 18:06:58,407 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 14:07:30] 2025-10-12 18:06:58,407 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 14:07:30] 2025-10-12 18:06:58,407 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 14:07:30] 2025-10-12 18:06:58,407 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 14:07:30] 2025-10-12 18:06:58,407 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 14:07:30] 2025-10-12 18:06:58,407 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 14:07:30] 2025-10-12 18:06:58,408 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 14:07:30] 2025-10-12 18:06:58,408 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 14:07:30] 2025-10-12 18:06:58,408 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 14:07:30] 2025-10-12 18:06:58,408 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 14:07:30] 2025-10-12 18:06:58,408 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 14:07:30] 2025-10-12 18:06:58,408 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 14:07:30] 2025-10-12 18:06:58,409 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 14:07:30] 2025-10-12 18:06:58,409 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 14:07:30] 2025-10-12 18:06:58,409 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 14:07:30] 2025-10-12 18:06:58,409 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 14:07:30] 2025-10-12 18:06:58,409 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 14:07:30] 2025-10-12 18:06:58,409 | INFO     | job 6840080997 has completed (purged errors)
[2025-10-12 14:07:30] 2025-10-12 18:06:58,410 | INFO     | overall cleanup function is called
[2025-10-12 14:07:30] 2025-10-12 18:06:59,417 | INFO     | --- collectZombieJob: --- 10, [24630]
[2025-10-12 14:07:30] 2025-10-12 18:06:59,418 | INFO     | zombie collector waiting for pid 24630
[2025-10-12 14:07:30] 2025-10-12 18:06:59,418 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 14:07:30] 2025-10-12 18:06:59,418 | INFO     | collected zombie processes
[2025-10-12 14:07:30] 2025-10-12 18:06:59,418 | INFO     | will attempt to kill all subprocesses of pid=24630
[2025-10-12 14:07:30] 2025-10-12 18:06:59,507 | INFO     | process IDs to be killed: [24630] (in reverse order)
[2025-10-12 14:07:30] 2025-10-12 18:06:59,559 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 14:07:30] 2025-10-12 18:06:59,560 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 14:07:30] 2025-10-12 18:06:59,562 | INFO     | did not find any defunct processes belonging to 24630
[2025-10-12 14:07:30] 2025-10-12 18:06:59,564 | INFO     | did not find any defunct processes belonging to 24630
[2025-10-12 14:07:30] 2025-10-12 18:06:59,565 | INFO     | ready for new job
[2025-10-12 14:07:30] 2025-10-12 18:06:59,565 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 14:07:30] 2025-10-12 18:06:59,566 | INFO     | ***************************************
[2025-10-12 14:07:30] 2025-10-12 18:06:59,566 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 14:07:30] 2025-10-12 18:06:59,566 | INFO     | ***************************************
[2025-10-12 14:07:30] 2025-10-12 18:06:59,566 | INFO     | 
[2025-10-12 14:07:30] 2025-10-12 18:06:59,567 | INFO     | architecture information:
[2025-10-12 14:07:30] 2025-10-12 18:06:59,567 | INFO     | executing command: cat /etc/os-release
[2025-10-12 14:07:30] 2025-10-12 18:06:59,584 | INFO     | cat /etc/os-release:
[2025-10-12 14:07:30] NAME="CentOS Linux"
[2025-10-12 14:07:30] VERSION="7 (Core)"
[2025-10-12 14:07:30] ID="centos"
[2025-10-12 14:07:30] ID_LIKE="rhel fedora"
[2025-10-12 14:07:30] VERSION_ID="7"
[2025-10-12 14:07:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 14:07:30] ANSI_COLOR="0;31"
[2025-10-12 14:07:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 14:07:30] HOME_URL="https://www.centos.org/"
[2025-10-12 14:07:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 14:07:30] 
[2025-10-12 14:07:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 14:07:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 14:07:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 14:07:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 14:07:30] 
[2025-10-12 14:07:30] 2025-10-12 18:06:59,584 | INFO     | ***************************************
[2025-10-12 14:07:30] 2025-10-12 18:07:00,087 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 14:07:30] 2025-10-12 18:07:00,106 | INFO     | sufficient remaining disk space (29361176576 B)
[2025-10-12 14:07:30] 2025-10-12 18:07:00,107 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 14:07:30] 2025-10-12 18:07:00,107 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 14:07:30] 2025-10-12 18:07:00,107 | INFO     | update_server=False
[2025-10-12 14:07:30] 2025-10-12 18:07:00,107 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 14:07:30] 2025-10-12 18:07:00,107 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:07:30] 2025-10-12 18:07:00,108 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 14:07:30] 2025-10-12 18:07:00,295 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:07:30] 2025-10-12 18:07:00,296 | INFO     | aborting loop
[2025-10-12 14:07:30] 2025-10-12 18:07:00,457 | INFO     | all job control threads have been joined
[2025-10-12 14:07:30] 2025-10-12 18:07:00,588 | INFO     | all data control threads have been joined
[2025-10-12 14:07:30] 2025-10-12 18:07:00,993 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 14:07:30] 2025-10-12 18:07:01,113 | INFO     | [job] retrieve thread has finished
[2025-10-12 14:07:30] 2025-10-12 18:07:01,113 | INFO     | [job] queue monitor thread has finished
[2025-10-12 14:07:30] 2025-10-12 18:07:01,181 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 14:07:30] 2025-10-12 18:07:01,253 | INFO     | all payload control threads have been joined
[2025-10-12 14:07:30] 2025-10-12 18:07:01,301 | INFO     | [job] job monitor thread has finished
[2025-10-12 14:07:30] 2025-10-12 18:07:01,463 | INFO     | [job] control thread has finished
[2025-10-12 14:07:30] 2025-10-12 18:07:01,495 | INFO     | [data] copytool_in thread has finished
[2025-10-12 14:07:30] 2025-10-12 18:07:01,593 | INFO     | [data] control thread has finished
[2025-10-12 14:07:30] 2025-10-12 18:07:01,747 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 14:07:30] 2025-10-12 18:07:01,751 | INFO     | [payload] validate_post thread has finished
[2025-10-12 14:07:30] 2025-10-12 18:07:02,052 | INFO     | [job] validate thread has finished
[2025-10-12 14:07:30] 2025-10-12 18:07:02,258 | INFO     | [payload] control thread has finished
[2025-10-12 14:07:30] 2025-10-12 18:07:02,466 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 14:07:30] 2025-10-12 18:07:02,559 | INFO     | [payload] failed_post thread has finished
[2025-10-12 14:07:30] 2025-10-12 18:07:02,570 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 14:07:30] 2025-10-12 18:07:02,999 | INFO     | [data] copytool_out thread has finished
[2025-10-12 14:07:30] 2025-10-12 18:07:04,114 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 14:07:30] 2025-10-12 18:07:13,728 | INFO     | [monitor] cgroup control has ended
[2025-10-12 14:07:30] 2025-10-12 18:07:14,805 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139964830652224)>', '<ExcThread(monitor, started 139964209665792)>']
[2025-10-12 14:07:30] 2025-10-12 18:07:19,831 | INFO     | all workflow threads have been joined
[2025-10-12 14:07:30] 2025-10-12 18:07:19,831 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 14:07:30] 2025-10-12 18:07:19,831 | INFO     | traces error code: 0
[2025-10-12 14:07:30] 2025-10-12 18:07:19,832 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 14:07:30] 2025-10-12 18:07:30,541 | INFO     | PID=18268 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 14:07:30] 2025-10-12 18:07:30,542 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 14:07:30] 2025-10-12 18:07:30,542 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 14:07:30] 2025-10-12 18:07:30,542 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 14:07:30] 2025-10-12 18:07:30,542 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 14:07:30] 2025-10-12 18:07:30,542 | INFO     | [monitor] control thread has ended
[2025-10-12 14:07:30] 2025-10-12 18:07:30,626 [wrapper] ==== pilot stdout END ====
[2025-10-12 14:07:30] 2025-10-12 18:07:30,630 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 14:07:30] 2025-10-12 18:07:30,633 [wrapper] pilotpid: 18268
[2025-10-12 14:07:30] 2025-10-12 18:07:30,637 [wrapper] Pilot exit status: 0
[2025-10-12 14:07:30] 2025-10-12 18:07:30,653 [wrapper] pandaids: 6840080997
[2025-10-12 14:07:30] 2025-10-12 18:07:30,693 [wrapper] cleanup supervisor_pilot  5405 18269
[2025-10-12 14:07:30] 2025-10-12 18:07:30,697 [wrapper] Test setup, not cleaning
[2025-10-12 14:07:30] 2025-10-12 18:07:30,701 [wrapper] apfmon messages muted
[2025-10-12 14:07:30] 2025-10-12 18:07:30,705 [wrapper] ==== wrapper stdout END ====
[2025-10-12 14:07:30] 2025-10-12 18:07:30,709 [wrapper] ==== wrapper stderr END ====
[2025-10-12 14:07:30]  *** Error codes and diagnostics ***
[2025-10-12 14:07:30]     "exeErrorCode": 0,
[2025-10-12 14:07:30]     "exeErrorDiag": "",
[2025-10-12 14:07:30]     "pilotErrorCode": 0,
[2025-10-12 14:07:30]     "pilotErrorDiag": "",
[2025-10-12 14:07:30]  *** Listing of results directory ***
[2025-10-12 14:07:30] total 412924
[2025-10-12 14:07:30] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 09:20 queuedata.json
[2025-10-12 14:07:30] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 09:22 pilot3.tar.gz
[2025-10-12 14:07:30] -rwx------ 1 boincer umatlas     36292 Oct 12 09:22 runpilot2-wrapper.sh
[2025-10-12 14:07:30] -rw-r--r-- 1 boincer umatlas       100 Oct 12 12:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 14:07:30] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 12:55 run_atlas
[2025-10-12 14:07:30] -rw-r--r-- 1 boincer umatlas       105 Oct 12 12:55 job.xml
[2025-10-12 14:07:30] -rw-r--r-- 2 boincer umatlas 223201035 Oct 12 12:55 EVNT.46676267._003862.pool.root.1
[2025-10-12 14:07:30] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:55 start_atlas.sh
[2025-10-12 14:07:30] drwxrwx--x 2 boincer umatlas      4096 Oct 12 12:55 shared
[2025-10-12 14:07:30] -rw-r--r-- 2 boincer umatlas    569674 Oct 12 12:55 input.tar.gz
[2025-10-12 14:07:30] -rw-r--r-- 1 boincer umatlas         0 Oct 12 12:55 boinc_lockfile
[2025-10-12 14:07:30] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 12:55 pandaJob.out
[2025-10-12 14:07:30] -rw------- 1 boincer umatlas    975528 Oct 12 12:56 agis_schedconf.cvmfs.json
[2025-10-12 14:07:30] -rw------- 1 boincer umatlas   1560580 Oct 12 12:56 agis_ddmendpoints.agis.ALL.json
[2025-10-12 14:07:30] drwx------ 5 boincer umatlas      4096 Oct 12 12:56 pilot3
[2025-10-12 14:07:30] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 14:03 init_data.xml
[2025-10-12 14:07:30] -rw------- 1 boincer umatlas 193748870 Oct 12 14:06 HITS.46676269._079369.pool.root.1
[2025-10-12 14:07:30] -rw-r--r-- 1 boincer umatlas       530 Oct 12 14:06 boinc_task_state.xml
[2025-10-12 14:07:30] -rw------- 1 boincer umatlas      1048 Oct 12 14:06 memory_monitor_summary.json
[2025-10-12 14:07:30] -rw------- 1 boincer umatlas    370777 Oct 12 14:06 log.46676269._079369.job.log.tgz.1
[2025-10-12 14:07:30] -rw------- 1 boincer umatlas      7855 Oct 12 14:06 heartbeat.json
[2025-10-12 14:07:30] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 14:07 boinc_mmap_file
[2025-10-12 14:07:30] -rw-r--r-- 1 boincer umatlas        27 Oct 12 14:07 wrapper_checkpoint.txt
[2025-10-12 14:07:30] -rw------- 1 boincer umatlas       745 Oct 12 14:07 pilotlog.txt
[2025-10-12 14:07:30] -rw------- 1 boincer umatlas        95 Oct 12 14:07 pilot_heartbeat.json
[2025-10-12 14:07:30] -rw------- 1 boincer umatlas    619770 Oct 12 14:07 log.46676269._079369.job.log.1
[2025-10-12 14:07:30] -rw------- 1 boincer umatlas       357 Oct 12 14:07 output.list
[2025-10-12 14:07:30] -rw-r--r-- 1 boincer umatlas       620 Oct 12 14:07 runtime_log
[2025-10-12 14:07:30] -rw------- 1 boincer umatlas   1013760 Oct 12 14:07 result.tar.gz
[2025-10-12 14:07:30] -rw------- 1 boincer umatlas       659 Oct 12 14:07 zYALDmHDBS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm8yTMDmlHtyKn.diag
[2025-10-12 14:07:30] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 14:07 runtime_log.err
[2025-10-12 14:07:30] -rw-r--r-- 1 boincer umatlas     21631 Oct 12 14:07 stderr.txt
[2025-10-12 14:07:30] HITS file was successfully produced:
[2025-10-12 14:07:30] -rw------- 1 boincer umatlas 193748870 Oct 12 14:06 shared/HITS.pool.root.1
[2025-10-12 14:07:30]  *** Contents of shared directory: ***
[2025-10-12 14:07:30] total 408752
[2025-10-12 14:07:30] -rw-r--r-- 2 boincer umatlas 223201035 Oct 12 12:55 ATLAS.root_0
[2025-10-12 14:07:30] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:55 start_atlas.sh
[2025-10-12 14:07:30] -rw-r--r-- 2 boincer umatlas    569674 Oct 12 12:55 input.tar.gz
[2025-10-12 14:07:30] -rw------- 1 boincer umatlas 193748870 Oct 12 14:06 HITS.pool.root.1
[2025-10-12 14:07:30] -rw------- 1 boincer umatlas   1013760 Oct 12 14:07 result.tar.gz
14:07:32 (14551): run_atlas exited; CPU time 45345.741423
14:07:32 (14551): called boinc_finish(0)

</stderr_txt>
]]>

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