Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:41:09 (4009781): wrapper (7.7.26015): starting
14:41:09 (4009781): wrapper: running run_atlas (--nthreads 10)
[2025-10-12 14:41:09] Arguments: --nthreads 10
[2025-10-12 14:41:09] Threads: 10
[2025-10-12 14:41:09] Checking for CVMFS
[2025-10-12 14:41:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:41:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:41:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:41:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:41:09] 2.13.2.0 1364387 129619 386240 151631 0 287 23780192 32935936 25094 16776704 0 196785157 99.576 230284211 31254 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 14:41:09] CVMFS is ok
[2025-10-12 14:41:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 14:41:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 14:41:09] Further information can be found at the LHC@home message board.
[2025-10-12 14:41:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:41:09] Checking for apptainer binary...
[2025-10-12 14:41:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 14:41:09] Running /usr/bin/apptainer --version
[2025-10-12 14:41:09] apptainer version 1.4.3-1.el9
[2025-10-12 14:41:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:41:10] c6-2-29-2.aglt2.org
[2025-10-12 14:41:10] apptainer works
[2025-10-12 14:41:10] Set ATHENA_PROC_NUMBER=10
[2025-10-12 14:41:10] Set ATHENA_CORE_NUMBER=10
[2025-10-12 14:41:10] Starting ATLAS job with PandaID=6840224796
[2025-10-12 14:41:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 16:17:45]  *** The last 200 lines of the pilot log: ***
[2025-10-12 16:17:45] ]
[2025-10-12 16:17:45] 2025-10-12 20:16:30,260 | INFO     | monitor loop #392: job 0:6840224796 is in state 'stageout'
[2025-10-12 16:17:45] 2025-10-12 20:16:30,260 | WARNING  | aborting job monitor tasks since payload process 4020938 is not running
[2025-10-12 16:17:45] 2025-10-12 20:16:30,263 | INFO     | transferring file log.46676269._082091.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6840224796/log.46676269._082091.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 16:17:45] 2025-10-12 20:16:30,264 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6840224796/log.46676269._082091.job.log.tgz.1 /tmp/boinchome/slots/2/log.46676269._082091.job
[2025-10-12 16:17:45] 2025-10-12 20:16:30,282 | INFO     | adding to output.list: log.46676269._082091.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4f/5e/log.46676269._082091.job.log.tg
[2025-10-12 16:17:45] 2025-10-12 20:16:30,283 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 16:17:45] 2025-10-12 20:16:30,283 | INFO     | summary of transferred files:
[2025-10-12 16:17:45] 2025-10-12 20:16:30,283 | INFO     |  -- lfn=log.46676269._082091.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 16:17:45] 2025-10-12 20:16:30,283 | INFO     | stage-out finished correctly
[2025-10-12 16:17:45] 2025-10-12 20:16:31,303 | INFO     | time since job start (5702s) is within the limit (172800.0s)
[2025-10-12 16:17:45] 2025-10-12 20:16:32,768 | INFO     | monitor loop #393: job 0:6840224796 is in state 'finished'
[2025-10-12 16:17:45] 2025-10-12 20:16:32,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:17:45] 2025-10-12 20:16:33,310 | INFO     | time since job start (5704s) is within the limit (172800.0s)
[2025-10-12 16:17:45] 2025-10-12 20:16:33,358 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 16:17:45] 2025-10-12 20:16:35,275 | INFO     | monitor loop #394: job 0:6840224796 is in state 'finished'
[2025-10-12 16:17:45] 2025-10-12 20:16:35,275 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:17:45] 2025-10-12 20:16:35,323 | INFO     | time since job start (5706s) is within the limit (172800.0s)
[2025-10-12 16:17:45] 2025-10-12 20:16:35,341 | INFO     | job 6840224796 has state=finished
[2025-10-12 16:17:45] 2025-10-12 20:16:35,341 | INFO     | preparing for final server update for job 6840224796 in state='finished'
[2025-10-12 16:17:45] 2025-10-12 20:16:35,341 | INFO     | this job has now completed (state=finished)
[2025-10-12 16:17:45] 2025-10-12 20:16:35,342 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 16:17:45] 2025-10-12 20:16:35,342 | INFO     | log transfer has been attempted: DONE
[2025-10-12 16:17:45] 2025-10-12 20:16:35,342 | INFO     | job 6840224796 has finished - writing final server update
[2025-10-12 16:17:45] 2025-10-12 20:16:35,342 | INFO     | total number of processed events: 400 (read)
[2025-10-12 16:17:45] 2025-10-12 20:16:35,343 | INFO     | executing command: lscpu
[2025-10-12 16:17:45] 2025-10-12 20:16:35,400 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 16:17:45] 2025-10-12 20:16:37,328 | INFO     | time since job start (5708s) is within the limit (172800.0s)
[2025-10-12 16:17:45] 2025-10-12 20:16:37,782 | INFO     | monitor loop #395: job 0:6840224796 is in state 'finished'
[2025-10-12 16:17:45] 2025-10-12 20:16:37,782 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 16:17:45] 2025-10-12 20:16:39,335 | INFO     | time since job start (5710s) is within the limit (172800.0s)
[2025-10-12 16:17:45] 2025-10-12 20:16:40,263 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 16:17:45] 2025-10-12 20:16:40,272 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2934.975125
[2025-10-12 16:17:45] 2025-10-12 20:16:40,281 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6840224796/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 16:17:45] 2025-10-12 20:16:40,282 | INFO     | extracted standard info from prmon json
[2025-10-12 16:17:45] 2025-10-12 20:16:40,282 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 16:17:45] 2025-10-12 20:16:40,282 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 16:17:45] 2025-10-12 20:16:40,282 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 16:17:45] 2025-10-12 20:16:40,282 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 16:17:45] 2025-10-12 20:16:40,285 | INFO     | fitting pss+swap vs Time
[2025-10-12 16:17:45] 2025-10-12 20:16:40,285 | INFO     | sum of square deviations: 197199771.0232561
[2025-10-12 16:17:45] 2025-10-12 20:16:40,286 | INFO     | sum of deviations: -3378121701.9302325
[2025-10-12 16:17:45] 2025-10-12 20:16:40,286 | INFO     | mean x: 1760297430.8139534
[2025-10-12 16:17:45] 2025-10-12 20:16:40,286 | INFO     | mean y: 2284621.9418604653
[2025-10-12 16:17:45] 2025-10-12 20:16:40,286 | INFO     | -- intersect: 30156979640.24068
[2025-10-12 16:17:45] 2025-10-12 20:16:40,286 | INFO     | intersect: 30156979640.24068
[2025-10-12 16:17:45] 2025-10-12 20:16:40,286 | INFO     | chi2: 0.09651995152148424
[2025-10-12 16:17:45] 2025-10-12 20:16:40,287 | INFO     | -- intersect: 30156979640.24068
[2025-10-12 16:17:45] 2025-10-12 20:16:40,287 | INFO     | current memory leak: -17.13 B/s (using 86 data points, chi2=0.10)
[2025-10-12 16:17:45] 2025-10-12 20:16:40,287 | INFO     | could have reported an average CPU frequency of 3056 MHz (7 samples)
[2025-10-12 16:17:45] 2025-10-12 20:16:40,287 | INFO     | ..............................
[2025-10-12 16:17:45] 2025-10-12 20:16:40,287 | INFO     | . Timing measurements:
[2025-10-12 16:17:45] 2025-10-12 20:16:40,287 | INFO     | . get job = 0 s
[2025-10-12 16:17:45] 2025-10-12 20:16:40,288 | INFO     | . initial setup = 2 s
[2025-10-12 16:17:45] 2025-10-12 20:16:40,288 | INFO     | . payload setup = 12 s
[2025-10-12 16:17:45] 2025-10-12 20:16:40,288 | INFO     | . stage-in = 0 s
[2025-10-12 16:17:45] 2025-10-12 20:16:40,288 | INFO     | . payload execution = 5663 s
[2025-10-12 16:17:45] 2025-10-12 20:16:40,288 | INFO     | . stage-out = 0 s
[2025-10-12 16:17:45] 2025-10-12 20:16:40,288 | INFO     | . log creation = 0 s
[2025-10-12 16:17:45] 2025-10-12 20:16:40,288 | INFO     | ..............................
[2025-10-12 16:17:45] 2025-10-12 20:16:40,474 | INFO     | 
[2025-10-12 16:17:45] 2025-10-12 20:16:40,474 | INFO     | job summary report
[2025-10-12 16:17:45] 2025-10-12 20:16:40,474 | INFO     | --------------------------------------------------
[2025-10-12 16:17:45] 2025-10-12 20:16:40,474 | INFO     | PanDA job id: 6840224796
[2025-10-12 16:17:45] 2025-10-12 20:16:40,474 | INFO     | task id: 46676269
[2025-10-12 16:17:45] 2025-10-12 20:16:40,474 | INFO     | errors: (none)
[2025-10-12 16:17:45] 2025-10-12 20:16:40,474 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 16:17:45] 2025-10-12 20:16:40,474 | INFO     | pilot state: finished 
[2025-10-12 16:17:45] 2025-10-12 20:16:40,475 | INFO     | transexitcode: 0
[2025-10-12 16:17:45] 2025-10-12 20:16:40,475 | INFO     | exeerrorcode: 0
[2025-10-12 16:17:45] 2025-10-12 20:16:40,475 | INFO     | exeerrordiag: 
[2025-10-12 16:17:45] 2025-10-12 20:16:40,475 | INFO     | exitcode: 0
[2025-10-12 16:17:45] 2025-10-12 20:16:40,475 | INFO     | exitmsg: OK
[2025-10-12 16:17:45] 2025-10-12 20:16:40,475 | INFO     | cpuconsumptiontime: 36350 s
[2025-10-12 16:17:45] 2025-10-12 20:16:40,475 | INFO     | nevents: 400
[2025-10-12 16:17:45] 2025-10-12 20:16:40,475 | INFO     | neventsw: 0
[2025-10-12 16:17:45] 2025-10-12 20:16:40,475 | INFO     | pid: 4020938
[2025-10-12 16:17:45] 2025-10-12 20:16:40,475 | INFO     | pgrp: 4020938
[2025-10-12 16:17:45] 2025-10-12 20:16:40,475 | INFO     | corecount: 10
[2025-10-12 16:17:45] 2025-10-12 20:16:40,475 | INFO     | event service: False
[2025-10-12 16:17:45] 2025-10-12 20:16:40,475 | INFO     | sizes: {0: 2348027, 1: 2348883, 10: 2349145, 12: 2349173, 5679: 2376017, 5681: 2385015, 5684: 2385199, 5691: 2385393}
[2025-10-12 16:17:45] 2025-10-12 20:16:40,475 | INFO     | --------------------------------------------------
[2025-10-12 16:17:45] 2025-10-12 20:16:40,475 | INFO     | 
[2025-10-12 16:17:45] 2025-10-12 20:16:40,475 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 16:17:45] 2025-10-12 20:16:40,521 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 16:17:45] 2025-10-12 20:16:40,521 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 16:17:45] 2025-10-12 20:16:40,521 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 16:17:45] 2025-10-12 20:16:40,522 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 16:17:45] 2025-10-12 20:16:40,522 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 16:17:45] 2025-10-12 20:16:40,522 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 16:17:45] 2025-10-12 20:16:40,522 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 16:17:45] 2025-10-12 20:16:40,522 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 16:17:45] 2025-10-12 20:16:40,522 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 16:17:45] 2025-10-12 20:16:40,522 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 16:17:45] 2025-10-12 20:16:40,522 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 16:17:45] 2025-10-12 20:16:40,522 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 16:17:45] 2025-10-12 20:16:40,523 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 16:17:45] 2025-10-12 20:16:40,523 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 16:17:45] 2025-10-12 20:16:40,523 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 16:17:45] 2025-10-12 20:16:40,523 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 16:17:45] 2025-10-12 20:16:40,523 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 16:17:45] 2025-10-12 20:16:40,523 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 16:17:45] 2025-10-12 20:16:40,523 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 16:17:45] 2025-10-12 20:16:40,523 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 16:17:45] 2025-10-12 20:16:40,524 | INFO     | job 6840224796 has completed (purged errors)
[2025-10-12 16:17:45] 2025-10-12 20:16:40,524 | INFO     | overall cleanup function is called
[2025-10-12 16:17:45] 2025-10-12 20:16:40,811 | INFO     | PID=4014005 has CPU usage=9.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 16:17:45] 2025-10-12 20:16:40,811 | INFO     | .. there are 26 such processes running
[2025-10-12 16:17:45] 2025-10-12 20:16:41,532 | INFO     | --- collectZombieJob: --- 10, [4020938]
[2025-10-12 16:17:45] 2025-10-12 20:16:41,532 | INFO     | zombie collector waiting for pid 4020938
[2025-10-12 16:17:45] 2025-10-12 20:16:41,532 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 16:17:45] 2025-10-12 20:16:41,532 | INFO     | collected zombie processes
[2025-10-12 16:17:45] 2025-10-12 20:16:41,532 | INFO     | will attempt to kill all subprocesses of pid=4020938
[2025-10-12 16:17:45] 2025-10-12 20:16:41,798 | INFO     | process IDs to be killed: [4020938] (in reverse order)
[2025-10-12 16:17:45] 2025-10-12 20:16:41,911 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 16:17:45] 2025-10-12 20:16:41,912 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 16:17:45] 2025-10-12 20:16:41,923 | INFO     | did not find any defunct processes belonging to 4020938
[2025-10-12 16:17:45] 2025-10-12 20:16:41,935 | INFO     | did not find any defunct processes belonging to 4020938
[2025-10-12 16:17:45] 2025-10-12 20:16:41,935 | INFO     | ready for new job
[2025-10-12 16:17:45] 2025-10-12 20:16:41,935 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 16:17:45] 2025-10-12 20:16:41,937 | INFO     | ***************************************
[2025-10-12 16:17:45] 2025-10-12 20:16:41,937 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 16:17:45] 2025-10-12 20:16:41,938 | INFO     | ***************************************
[2025-10-12 16:17:45] 2025-10-12 20:16:41,938 | INFO     | 
[2025-10-12 16:17:45] 2025-10-12 20:16:41,952 | INFO     | architecture information:
[2025-10-12 16:17:45] 2025-10-12 20:16:41,953 | INFO     | executing command: cat /etc/os-release
[2025-10-12 16:17:45] 2025-10-12 20:16:41,966 | INFO     | cat /etc/os-release:
[2025-10-12 16:17:45] NAME="CentOS Linux"
[2025-10-12 16:17:45] VERSION="7 (Core)"
[2025-10-12 16:17:45] ID="centos"
[2025-10-12 16:17:45] ID_LIKE="rhel fedora"
[2025-10-12 16:17:45] VERSION_ID="7"
[2025-10-12 16:17:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 16:17:45] ANSI_COLOR="0;31"
[2025-10-12 16:17:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 16:17:45] HOME_URL="https://www.centos.org/"
[2025-10-12 16:17:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 16:17:45] 
[2025-10-12 16:17:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 16:17:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 16:17:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 16:17:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 16:17:45] 
[2025-10-12 16:17:45] 2025-10-12 20:16:41,966 | INFO     | ***************************************
[2025-10-12 16:17:45] 2025-10-12 20:16:42,469 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 16:17:45] 2025-10-12 20:16:42,485 | INFO     | sufficient remaining disk space (75392614400 B)
[2025-10-12 16:17:45] 2025-10-12 20:16:42,485 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 16:17:45] 2025-10-12 20:16:42,485 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 16:17:45] 2025-10-12 20:16:42,486 | INFO     | update_server=False
[2025-10-12 16:17:45] 2025-10-12 20:16:42,486 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 16:17:45] 2025-10-12 20:16:42,486 | INFO     | all payload control threads have been joined
[2025-10-12 16:17:45] 2025-10-12 20:16:42,799 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 16:17:45] 2025-10-12 20:16:42,799 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 16:17:45] 2025-10-12 20:16:42,799 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:17:45] 2025-10-12 20:16:42,799 | INFO     | will abort loop
[2025-10-12 16:17:45] 2025-10-12 20:16:43,415 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 16:17:45] 2025-10-12 20:16:43,430 | INFO     | all data control threads have been joined
[2025-10-12 16:17:45] 2025-10-12 20:16:43,491 | INFO     | [job] retrieve thread has finished
[2025-10-12 16:17:45] 2025-10-12 20:16:43,492 | INFO     | [payload] control thread has finished
[2025-10-12 16:17:45] 2025-10-12 20:16:43,557 | INFO     | [data] copytool_in thread has finished
[2025-10-12 16:17:45] 2025-10-12 20:16:43,584 | INFO     | [payload] failed_post thread has finished
[2025-10-12 16:17:45] 2025-10-12 20:16:43,808 | INFO     | [job] job monitor thread has finished
[2025-10-12 16:17:45] 2025-10-12 20:16:43,932 | INFO     | [payload] validate_post thread has finished
[2025-10-12 16:17:45] 2025-10-12 20:16:43,978 | INFO     | all job control threads have been joined
[2025-10-12 16:17:45] 2025-10-12 20:16:43,994 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 16:17:45] 2025-10-12 20:16:44,079 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 16:17:45] 2025-10-12 20:16:44,436 | INFO     | [data] control thread has finished
[2025-10-12 16:17:45] 2025-10-12 20:16:44,446 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 16:17:45] 2025-10-12 20:16:44,734 | INFO     | [job] validate thread has finished
[2025-10-12 16:17:45] 2025-10-12 20:16:44,977 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 16:17:45] 2025-10-12 20:16:44,993 | INFO     | [job] control thread has finished
[2025-10-12 16:17:45] 2025-10-12 20:16:45,424 | INFO     | [data] copytool_out thread has finished
[2025-10-12 16:17:45] 2025-10-12 20:16:45,488 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 16:17:45] 2025-10-12 20:16:46,493 | INFO     | [job] queue monitor thread has finished
[2025-10-12 16:17:45] 2025-10-12 20:16:48,001 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 16:17:45] 2025-10-12 20:16:52,640 | INFO     | job.realtimelogging is not enabled
[2025-10-12 16:17:45] 2025-10-12 20:16:53,645 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 16:17:45] 2025-10-12 20:17:13,217 | INFO     | PID=4014005 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 16:17:45] 2025-10-12 20:17:13,217 | INFO     | .. there are 26 such processes running
[2025-10-12 16:17:45] 2025-10-12 20:17:13,219 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 16:17:45] 2025-10-12 20:17:13,219 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 16:17:45] 2025-10-12 20:17:13,219 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 16:17:45] 2025-10-12 20:17:38,587 | INFO     | [monitor] cgroup control has ended
[2025-10-12 16:17:45] 2025-10-12 20:17:40,081 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139994377209664)>', '<ExcThread(monitor, started 139993427199744)>']
[2025-10-12 16:17:45] 2025-10-12 20:17:40,365 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 16:17:45] 2025-10-12 20:17:40,365 | INFO     | [monitor] control thread has ended
[2025-10-12 16:17:45] 2025-10-12 20:17:45,106 | INFO     | all workflow threads have been joined
[2025-10-12 16:17:45] 2025-10-12 20:17:45,106 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 16:17:45] 2025-10-12 20:17:45,106 | INFO     | traces error code: 0
[2025-10-12 16:17:45] 2025-10-12 20:17:45,107 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 16:17:45] 2025-10-12 20:17:45,280 [wrapper] ==== pilot stdout END ====
[2025-10-12 16:17:45] 2025-10-12 20:17:45,282 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 16:17:45] 2025-10-12 20:17:45,286 [wrapper] pilotpid: 4014005
[2025-10-12 16:17:45] 2025-10-12 20:17:45,290 [wrapper] Pilot exit status: 0
[2025-10-12 16:17:45] 2025-10-12 20:17:45,302 [wrapper] pandaids: 6840224796
[2025-10-12 16:17:45] 2025-10-12 20:17:45,370 [wrapper] cleanup supervisor_pilot  108779 4014006
[2025-10-12 16:17:45] 2025-10-12 20:17:45,374 [wrapper] Test setup, not cleaning
[2025-10-12 16:17:45] 2025-10-12 20:17:45,376 [wrapper] apfmon messages muted
[2025-10-12 16:17:45] 2025-10-12 20:17:45,379 [wrapper] ==== wrapper stdout END ====
[2025-10-12 16:17:45] 2025-10-12 20:17:45,381 [wrapper] ==== wrapper stderr END ====
[2025-10-12 16:17:45]  *** Error codes and diagnostics ***
[2025-10-12 16:17:45]     "exeErrorCode": 0,
[2025-10-12 16:17:45]     "exeErrorDiag": "",
[2025-10-12 16:17:45]     "pilotErrorCode": 0,
[2025-10-12 16:17:45]     "pilotErrorDiag": "",
[2025-10-12 16:17:45]  *** Listing of results directory ***
[2025-10-12 16:17:45] total 409900
[2025-10-12 16:17:45] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 11:00 pilot3.tar.gz
[2025-10-12 16:17:45] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 11:21 queuedata.json
[2025-10-12 16:17:45] -rwx------. 1 boincer umatlas     36292 Oct 12 11:22 runpilot2-wrapper.sh
[2025-10-12 16:17:45] -rw-r--r--. 1 boincer umatlas       100 Oct 12 14:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 16:17:45] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 14:41 run_atlas
[2025-10-12 16:17:45] -rw-r--r--. 1 boincer umatlas       105 Oct 12 14:41 job.xml
[2025-10-12 16:17:45] -rw-r--r--. 2 boincer umatlas 218676675 Oct 12 14:41 EVNT.46676267._004566.pool.root.1
[2025-10-12 16:17:45] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 14:41 start_atlas.sh
[2025-10-12 16:17:45] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 14:41 shared
[2025-10-12 16:17:45] -rw-r--r--. 2 boincer umatlas    569683 Oct 12 14:41 input.tar.gz
[2025-10-12 16:17:45] -rw-r--r--. 1 boincer umatlas         0 Oct 12 14:41 boinc_lockfile
[2025-10-12 16:17:45] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 14:41 pandaJob.out
[2025-10-12 16:17:45] -rw-------. 1 boincer umatlas    975528 Oct 12 14:41 agis_schedconf.cvmfs.json
[2025-10-12 16:17:45] -rw-------. 1 boincer umatlas   1560580 Oct 12 14:41 agis_ddmendpoints.agis.ALL.json
[2025-10-12 16:17:45] drwx------. 5 boincer umatlas      4096 Oct 12 14:41 pilot3
[2025-10-12 16:17:45] -rw-r--r--. 1 boincer umatlas      6841 Oct 12 16:09 init_data.xml
[2025-10-12 16:17:45] -rw-------. 1 boincer umatlas 194822175 Oct 12 16:15 HITS.46676269._082091.pool.root.1
[2025-10-12 16:17:45] -rw-r--r--. 1 boincer umatlas       529 Oct 12 16:16 boinc_task_state.xml
[2025-10-12 16:17:45] -rw-------. 1 boincer umatlas      1042 Oct 12 16:16 memory_monitor_summary.json
[2025-10-12 16:17:45] -rw-------. 1 boincer umatlas    361076 Oct 12 16:16 log.46676269._082091.job.log.tgz.1
[2025-10-12 16:17:45] -rw-------. 1 boincer umatlas      7826 Oct 12 16:16 heartbeat.json
[2025-10-12 16:17:45] -rw-------. 1 boincer umatlas        95 Oct 12 16:17 pilot_heartbeat.json
[2025-10-12 16:17:45] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 16:17 boinc_mmap_file
[2025-10-12 16:17:45] -rw-r--r--. 1 boincer umatlas        27 Oct 12 16:17 wrapper_checkpoint.txt
[2025-10-12 16:17:45] -rw-------. 1 boincer umatlas      5082 Oct 12 16:17 pilotlog.txt
[2025-10-12 16:17:45] -rw-------. 1 boincer umatlas    806035 Oct 12 16:17 log.46676269._082091.job.log.1
[2025-10-12 16:17:45] -rw-------. 1 boincer umatlas       357 Oct 12 16:17 output.list
[2025-10-12 16:17:45] -rw-r--r--. 1 boincer umatlas       620 Oct 12 16:17 runtime_log
[2025-10-12 16:17:45] -rw-------. 1 boincer umatlas   1187840 Oct 12 16:17 result.tar.gz
[2025-10-12 16:17:45] -rw-r--r--. 1 boincer umatlas      8710 Oct 12 16:17 runtime_log.err
[2025-10-12 16:17:45] -rw-------. 1 boincer umatlas       654 Oct 12 16:17 aLcNDmN5CS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuQkNDm6eAycn.diag
[2025-10-12 16:17:45] -rw-r--r--. 1 boincer umatlas     22429 Oct 12 16:17 stderr.txt
[2025-10-12 16:17:45] HITS file was successfully produced:
[2025-10-12 16:17:45] -rw-------. 1 boincer umatlas 194822175 Oct 12 16:15 shared/HITS.pool.root.1
[2025-10-12 16:17:45]  *** Contents of shared directory: ***
[2025-10-12 16:17:45] total 405552
[2025-10-12 16:17:45] -rw-r--r--. 2 boincer umatlas 218676675 Oct 12 14:41 ATLAS.root_0
[2025-10-12 16:17:45] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 14:41 start_atlas.sh
[2025-10-12 16:17:45] -rw-r--r--. 2 boincer umatlas    569683 Oct 12 14:41 input.tar.gz
[2025-10-12 16:17:45] -rw-------. 1 boincer umatlas 194822175 Oct 12 16:15 HITS.pool.root.1
[2025-10-12 16:17:45] -rw-------. 1 boincer umatlas   1187840 Oct 12 16:17 result.tar.gz
16:17:47 (4009781): run_atlas exited; CPU time 36427.593601
16:17:47 (4009781): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN