Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:29:28 (19245): wrapper (7.7.26015): starting
03:29:28 (19245): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 03:29:28] Arguments: --nthreads 8
[2025-10-13 03:29:28] Threads: 8
[2025-10-13 03:29:28] Checking for CVMFS
[2025-10-13 03:29:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 03:29:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 03:29:29] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 03:29:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 03:29:30] 2.11.2.0 17493 23707 77600 151643 3 60 21037061 25165824 4632 130560 0 7245341 99.915 2927771 1480 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-13 03:29:30] CVMFS is ok
[2025-10-13 03:29:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 03:29:30] Checking for apptainer binary...
[2025-10-13 03:29:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 03:29:30] Running /usr/bin/apptainer --version
[2025-10-13 03:29:30] apptainer version 1.3.2-1.el7
[2025-10-13 03:29:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 03:29:37] cg-vwn341.simple-grid.lan
[2025-10-13 03:29:37] apptainer works
[2025-10-13 03:29:37] Set ATHENA_PROC_NUMBER=8
[2025-10-13 03:29:37] Set ATHENA_CORE_NUMBER=8
[2025-10-13 03:29:38] Starting ATLAS job with PandaID=6840080977
[2025-10-13 03:29:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 07:41:47]  *** The last 200 lines of the pilot log: ***
[2025-10-13 07:41:47] 2025-10-13 05:40:43,693 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 07:41:47] 2025-10-13 05:40:43,694 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-10-13 07:41:47] 2025-10-13 05:40:43,696 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6840080977/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 07:41:47] 2025-10-13 05:40:43,696 | INFO     | extracted standard info from prmon json
[2025-10-13 07:41:47] 2025-10-13 05:40:43,696 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 07:41:47] 2025-10-13 05:40:43,697 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 07:41:47] 2025-10-13 05:40:43,697 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 07:41:47] 2025-10-13 05:40:43,697 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 07:41:47] 2025-10-13 05:40:43,702 | INFO     | fitting pss+swap vs Time
[2025-10-13 07:41:47] 2025-10-13 05:40:43,703 | INFO     | sum of square deviations: 4024149870.0
[2025-10-13 07:41:47] 2025-10-13 05:40:43,705 | INFO     | sum of deviations: 54479206078.99999
[2025-10-13 07:41:47] 2025-10-13 05:40:43,705 | INFO     | mean x: 1760326783.0
[2025-10-13 07:41:47] 2025-10-13 05:40:43,705 | INFO     | mean y: 2453687.876595745
[2025-10-13 07:41:47] 2025-10-13 05:40:43,705 | INFO     | -- intersect: -23828966282.930832
[2025-10-13 07:41:47] 2025-10-13 05:40:43,705 | INFO     | intersect: -23828966282.930832
[2025-10-13 07:41:47] 2025-10-13 05:40:43,706 | INFO     | chi2: 5.522525658260231
[2025-10-13 07:41:47] 2025-10-13 05:40:43,706 | INFO     | sum of square deviations: 3772712597.5
[2025-10-13 07:41:47] 2025-10-13 05:40:43,708 | INFO     | sum of deviations: 68593302325.99997
[2025-10-13 07:41:47] 2025-10-13 05:40:43,709 | INFO     | mean x: 1760326630.5
[2025-10-13 07:41:47] 2025-10-13 05:40:43,709 | INFO     | mean y: 2462086.756521739
[2025-10-13 07:41:47] 2025-10-13 05:40:43,709 | INFO     | -- intersect: -32002789741.43958
[2025-10-13 07:41:47] 2025-10-13 05:40:43,709 | INFO     | intersect: -32002789741.43958
[2025-10-13 07:41:47] 2025-10-13 05:40:43,709 | INFO     | chi2: 4.798783750061096
[2025-10-13 07:41:47] 2025-10-13 05:40:43,710 | INFO     | current chi2=4.798783750061096 (change=13.1052701786294 %)
[2025-10-13 07:41:47] 2025-10-13 05:40:43,710 | INFO     | right removable region: 229
[2025-10-13 07:41:47] 2025-10-13 05:40:43,710 | INFO     | sum of square deviations: 3772712597.5
[2025-10-13 07:41:47] 2025-10-13 05:40:43,712 | INFO     | sum of deviations: -23374532202.5
[2025-10-13 07:41:47] 2025-10-13 05:40:43,712 | INFO     | mean x: 1760326935.5
[2025-10-13 07:41:47] 2025-10-13 05:40:43,712 | INFO     | mean y: 2500833.3782608695
[2025-10-13 07:41:47] 2025-10-13 05:40:43,712 | INFO     | -- intersect: 10908928921.231804
[2025-10-13 07:41:47] 2025-10-13 05:40:43,713 | INFO     | intersect: 10908928921.231804
[2025-10-13 07:41:47] 2025-10-13 05:40:43,713 | INFO     | chi2: 1.212157245894352
[2025-10-13 07:41:47] 2025-10-13 05:40:43,713 | INFO     | current chi2=1.212157245894352 (change=78.05067244764562 %)
[2025-10-13 07:41:47] 2025-10-13 05:40:43,714 | INFO     | sum of square deviations: 3531973200.0
[2025-10-13 07:41:47] 2025-10-13 05:40:43,716 | INFO     | sum of deviations: -38263798118.99999
[2025-10-13 07:41:47] 2025-10-13 05:40:43,716 | INFO     | mean x: 1760327088.0
[2025-10-13 07:41:47] 2025-10-13 05:40:43,716 | INFO     | mean y: 2510169.5244444446
[2025-10-13 07:41:47] 2025-10-13 05:40:43,716 | INFO     | -- intersect: 19073096639.04781
[2025-10-13 07:41:47] 2025-10-13 05:40:43,716 | INFO     | intersect: 19073096639.04781
[2025-10-13 07:41:47] 2025-10-13 05:40:43,717 | INFO     | chi2: 0.9260766066850841
[2025-10-13 07:41:47] 2025-10-13 05:40:43,717 | INFO     | current chi2=0.9260766066850841 (change=23.600951128926535 %)
[2025-10-13 07:41:47] 2025-10-13 05:40:43,717 | INFO     | left removable region: 20
[2025-10-13 07:41:47] 2025-10-13 05:40:43,717 | INFO     | sum of square deviations: 2830787960.0
[2025-10-13 07:41:47] 2025-10-13 05:40:43,719 | INFO     | sum of deviations: -8471170466.999996
[2025-10-13 07:41:47] 2025-10-13 05:40:43,719 | INFO     | mean x: 1760327210.0
[2025-10-13 07:41:47] 2025-10-13 05:40:43,719 | INFO     | mean y: 2510085.071770335
[2025-10-13 07:41:47] 2025-10-13 05:40:43,719 | INFO     | -- intersect: 5270312578.342407
[2025-10-13 07:41:47] 2025-10-13 05:40:43,719 | INFO     | intersect: 5270312578.342407
[2025-10-13 07:41:47] 2025-10-13 05:40:43,720 | INFO     | chi2: 0.08761342838840666
[2025-10-13 07:41:47] 2025-10-13 05:40:43,720 | INFO     | -- intersect: 5270312578.342407
[2025-10-13 07:41:47] 2025-10-13 05:40:43,720 | INFO     | current memory leak: -2.99 B/s (using 209 data points, chi2=0.09)
[2025-10-13 07:41:47] 2025-10-13 05:40:43,721 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-13 07:41:47] 2025-10-13 05:40:43,721 | INFO     | ..............................
[2025-10-13 07:41:47] 2025-10-13 05:40:43,721 | INFO     | . Timing measurements:
[2025-10-13 07:41:47] 2025-10-13 05:40:43,721 | INFO     | . get job = 0 s
[2025-10-13 07:41:47] 2025-10-13 05:40:43,721 | INFO     | . initial setup = 9 s
[2025-10-13 07:41:47] 2025-10-13 05:40:43,721 | INFO     | . payload setup = 106 s
[2025-10-13 07:41:47] 2025-10-13 05:40:43,721 | INFO     | . stage-in = 0 s
[2025-10-13 07:41:47] 2025-10-13 05:40:43,722 | INFO     | . payload execution = 14453 s
[2025-10-13 07:41:47] 2025-10-13 05:40:43,722 | INFO     | . stage-out = 4 s
[2025-10-13 07:41:47] 2025-10-13 05:40:43,722 | INFO     | . log creation = 1 s
[2025-10-13 07:41:47] 2025-10-13 05:40:43,722 | INFO     | ..............................
[2025-10-13 07:41:47] 2025-10-13 05:40:43,852 | INFO     | 
[2025-10-13 07:41:47] 2025-10-13 05:40:43,853 | INFO     | job summary report
[2025-10-13 07:41:47] 2025-10-13 05:40:43,853 | INFO     | --------------------------------------------------
[2025-10-13 07:41:47] 2025-10-13 05:40:43,853 | INFO     | PanDA job id: 6840080977
[2025-10-13 07:41:47] 2025-10-13 05:40:43,853 | INFO     | task id: 46676269
[2025-10-13 07:41:47] 2025-10-13 05:40:43,853 | INFO     | errors: (none)
[2025-10-13 07:41:47] 2025-10-13 05:40:43,853 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 07:41:47] 2025-10-13 05:40:43,853 | INFO     | pilot state: finished 
[2025-10-13 07:41:47] 2025-10-13 05:40:43,853 | INFO     | transexitcode: 0
[2025-10-13 07:41:47] 2025-10-13 05:40:43,853 | INFO     | exeerrorcode: 0
[2025-10-13 07:41:47] 2025-10-13 05:40:43,853 | INFO     | exeerrordiag: 
[2025-10-13 07:41:47] 2025-10-13 05:40:43,854 | INFO     | exitcode: 0
[2025-10-13 07:41:47] 2025-10-13 05:40:43,854 | INFO     | exitmsg: OK
[2025-10-13 07:41:47] 2025-10-13 05:40:43,854 | INFO     | cpuconsumptiontime: 54682 s
[2025-10-13 07:41:47] 2025-10-13 05:40:43,854 | INFO     | nevents: 400
[2025-10-13 07:41:47] 2025-10-13 05:40:43,854 | INFO     | neventsw: 0
[2025-10-13 07:41:47] 2025-10-13 05:40:43,854 | INFO     | pid: 29613
[2025-10-13 07:41:47] 2025-10-13 05:40:43,854 | INFO     | pgrp: 29613
[2025-10-13 07:41:47] 2025-10-13 05:40:43,854 | INFO     | corecount: 8
[2025-10-13 07:41:47] 2025-10-13 05:40:43,854 | INFO     | event service: False
[2025-10-13 07:41:47] 2025-10-13 05:40:43,854 | INFO     | sizes: {0: 2347973, 1: 2348830, 12: 2348830, 23: 2348858, 34: 2348886, 44: 2348914, 55: 2349070, 66: 2349098, 77: 2349126, 85: 2349444, 87: 2349472, 14564: 2379926
[2025-10-13 07:41:47] 2025-10-13 05:40:43,854 | INFO     | --------------------------------------------------
[2025-10-13 07:41:47] 2025-10-13 05:40:43,854 | INFO     | 
[2025-10-13 07:41:47] 2025-10-13 05:40:43,855 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-10-13 07:41:47] 2025-10-13 05:40:43,880 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 07:41:47] 2025-10-13 05:40:43,881 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 07:41:47] 2025-10-13 05:40:43,881 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 07:41:47] 2025-10-13 05:40:43,881 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 07:41:47] 2025-10-13 05:40:43,881 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 07:41:47] 2025-10-13 05:40:43,881 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 07:41:47] 2025-10-13 05:40:43,881 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 07:41:47] 2025-10-13 05:40:43,881 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 07:41:47] 2025-10-13 05:40:43,881 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 07:41:47] 2025-10-13 05:40:43,881 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 07:41:47] 2025-10-13 05:40:43,882 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 07:41:47] 2025-10-13 05:40:43,882 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 07:41:47] 2025-10-13 05:40:43,882 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 07:41:47] 2025-10-13 05:40:43,882 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 07:41:47] 2025-10-13 05:40:43,882 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 07:41:47] 2025-10-13 05:40:43,882 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 07:41:47] 2025-10-13 05:40:43,882 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 07:41:47] 2025-10-13 05:40:43,882 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 07:41:47] 2025-10-13 05:40:43,882 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 07:41:47] 2025-10-13 05:40:43,883 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 07:41:47] 2025-10-13 05:40:43,883 | INFO     | job 6840080977 has completed (purged errors)
[2025-10-13 07:41:47] 2025-10-13 05:40:43,883 | INFO     | overall cleanup function is called
[2025-10-13 07:41:47] 2025-10-13 05:40:44,891 | INFO     | --- collectZombieJob: --- 10, [29613]
[2025-10-13 07:41:47] 2025-10-13 05:40:44,892 | INFO     | zombie collector waiting for pid 29613
[2025-10-13 07:41:47] 2025-10-13 05:40:44,892 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 07:41:47] 2025-10-13 05:40:44,892 | INFO     | collected zombie processes
[2025-10-13 07:41:47] 2025-10-13 05:40:44,892 | INFO     | will attempt to kill all subprocesses of pid=29613
[2025-10-13 07:41:47] 2025-10-13 05:40:44,985 | INFO     | process IDs to be killed: [29613] (in reverse order)
[2025-10-13 07:41:47] 2025-10-13 05:40:45,074 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 07:41:47] 2025-10-13 05:40:45,074 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 07:41:47] 2025-10-13 05:40:45,078 | INFO     | did not find any defunct processes belonging to 29613
[2025-10-13 07:41:47] 2025-10-13 05:40:45,081 | INFO     | did not find any defunct processes belonging to 29613
[2025-10-13 07:41:47] 2025-10-13 05:40:45,082 | INFO     | ready for new job
[2025-10-13 07:41:47] 2025-10-13 05:40:45,082 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 07:41:47] 2025-10-13 05:40:45,084 | INFO     | ***************************************
[2025-10-13 07:41:47] 2025-10-13 05:40:45,084 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 07:41:47] 2025-10-13 05:40:45,085 | INFO     | ***************************************
[2025-10-13 07:41:47] 2025-10-13 05:40:45,085 | INFO     | 
[2025-10-13 07:41:47] 2025-10-13 05:40:45,085 | INFO     | pilot is running in a VM
[2025-10-13 07:41:47] 2025-10-13 05:40:45,085 | INFO     | architecture information:
[2025-10-13 07:41:47] 2025-10-13 05:40:45,086 | INFO     | executing command: cat /etc/os-release
[2025-10-13 07:41:47] 2025-10-13 05:40:45,143 | INFO     | cat /etc/os-release:
[2025-10-13 07:41:47] NAME="CentOS Linux"
[2025-10-13 07:41:47] VERSION="7 (Core)"
[2025-10-13 07:41:47] ID="centos"
[2025-10-13 07:41:47] ID_LIKE="rhel fedora"
[2025-10-13 07:41:47] VERSION_ID="7"
[2025-10-13 07:41:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 07:41:47] ANSI_COLOR="0;31"
[2025-10-13 07:41:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 07:41:47] HOME_URL="https://www.centos.org/"
[2025-10-13 07:41:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 07:41:47] 
[2025-10-13 07:41:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 07:41:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 07:41:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 07:41:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 07:41:47] 
[2025-10-13 07:41:47] 2025-10-13 05:40:45,143 | INFO     | ***************************************
[2025-10-13 07:41:47] 2025-10-13 05:40:45,647 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-10-13 07:41:47] 2025-10-13 05:40:45,681 | INFO     | sufficient remaining disk space (495829647360 B)
[2025-10-13 07:41:47] 2025-10-13 05:40:45,682 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 07:41:47] 2025-10-13 05:40:45,682 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 07:41:47] 2025-10-13 05:40:45,682 | INFO     | update_server=False
[2025-10-13 07:41:47] 2025-10-13 05:40:45,682 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 07:41:47] 2025-10-13 05:40:45,682 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:41:47] 2025-10-13 05:40:45,683 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 07:41:47] 2025-10-13 05:40:45,801 | INFO     | all job control threads have been joined
[2025-10-13 07:41:47] 2025-10-13 05:40:45,826 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 07:41:47] 2025-10-13 05:40:45,827 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 07:41:47] 2025-10-13 05:40:45,827 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 07:41:47] 2025-10-13 05:40:45,827 | INFO     | will abort loop
[2025-10-13 07:41:47] 2025-10-13 05:40:46,309 | INFO     | all data control threads have been joined
[2025-10-13 07:41:47] 2025-10-13 05:40:46,379 | INFO     | all payload control threads have been joined
[2025-10-13 07:41:47] 2025-10-13 05:40:46,689 | INFO     | [job] retrieve thread has finished
[2025-10-13 07:41:47] 2025-10-13 05:40:46,692 | INFO     | [job] queue monitor thread has finished
[2025-10-13 07:41:47] 2025-10-13 05:40:46,700 | INFO     | [payload] failed_post thread has finished
[2025-10-13 07:41:47] 2025-10-13 05:40:46,808 | INFO     | [job] control thread has finished
[2025-10-13 07:41:47] 2025-10-13 05:40:46,833 | INFO     | [job] job monitor thread has finished
[2025-10-13 07:41:47] 2025-10-13 05:40:46,930 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 07:41:47] 2025-10-13 05:40:46,983 | INFO     | [job] validate thread has finished
[2025-10-13 07:41:47] 2025-10-13 05:40:47,037 | INFO     | [payload] validate_post thread has finished
[2025-10-13 07:41:47] 2025-10-13 05:40:47,181 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 07:41:47] 2025-10-13 05:40:47,255 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 07:41:47] 2025-10-13 05:40:47,315 | INFO     | [data] control thread has finished
[2025-10-13 07:41:47] 2025-10-13 05:40:47,385 | INFO     | [payload] control thread has finished
[2025-10-13 07:41:47] 2025-10-13 05:40:47,625 | INFO     | [data] copytool_in thread has finished
[2025-10-13 07:41:47] 2025-10-13 05:40:47,690 | INFO     | [data] copytool_out thread has finished
[2025-10-13 07:41:47] 2025-10-13 05:40:47,779 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 07:41:47] 2025-10-13 05:40:47,794 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 07:41:47] 2025-10-13 05:40:51,788 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 07:41:47] 2025-10-13 05:41:15,169 | INFO     | PID=23051 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 07:41:47] 2025-10-13 05:41:15,170 | INFO     | .. there are 9 such processes running
[2025-10-13 07:41:47] 2025-10-13 05:41:15,171 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 07:41:47] 2025-10-13 05:41:15,171 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 07:41:47] 2025-10-13 05:41:15,171 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 07:41:47] 2025-10-13 05:41:37,530 | INFO     | [monitor] cgroup control has ended
[2025-10-13 07:41:47] 2025-10-13 05:41:38,537 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140022592337728)>', '<ExcThread(monitor, started 140022149793536)>']
[2025-10-13 07:41:47] 2025-10-13 05:41:39,314 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 07:41:47] 2025-10-13 05:41:39,315 | INFO     | [monitor] control thread has ended
[2025-10-13 07:41:47] 2025-10-13 05:41:43,562 | INFO     | all workflow threads have been joined
[2025-10-13 07:41:47] 2025-10-13 05:41:43,563 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 07:41:47] 2025-10-13 05:41:43,563 | INFO     | traces error code: 0
[2025-10-13 07:41:47] 2025-10-13 05:41:43,563 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 07:41:47] 2025-10-13 05:41:43,952 [wrapper] ==== pilot stdout END ====
[2025-10-13 07:41:47] 2025-10-13 05:41:44,041 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 07:41:47] 2025-10-13 05:41:44,129 [wrapper] pilotpid: 23051
[2025-10-13 07:41:47] 2025-10-13 05:41:44,222 [wrapper] Pilot exit status: 0
[2025-10-13 07:41:47] 2025-10-13 05:41:44,695 [wrapper] pandaids: 6840080977
[2025-10-13 07:41:47] 2025-10-13 05:41:45,545 [wrapper] cleanup supervisor_pilot 23929 23052
[2025-10-13 07:41:47] 2025-10-13 05:41:45,591 [wrapper] Test setup, not cleaning
[2025-10-13 07:41:47] 2025-10-13 05:41:45,675 [wrapper] apfmon messages muted
[2025-10-13 07:41:47] 2025-10-13 05:41:45,750 [wrapper] ==== wrapper stdout END ====
[2025-10-13 07:41:47] 2025-10-13 05:41:45,805 [wrapper] ==== wrapper stderr END ====
[2025-10-13 07:41:47]  *** Error codes and diagnostics ***
[2025-10-13 07:41:47]     "exeErrorCode": 0,
[2025-10-13 07:41:47]     "exeErrorDiag": "",
[2025-10-13 07:41:47]     "pilotErrorCode": 0,
[2025-10-13 07:41:47]     "pilotErrorDiag": "",
[2025-10-13 07:41:47]  *** Listing of results directory ***
[2025-10-13 07:41:48] total 410532
[2025-10-13 07:41:48] -rw-r--r--. 1 boinc boinc    557409 Oct 12 15:05 pilot3.tar.gz
[2025-10-13 07:41:48] -rw-r--r--. 1 boinc boinc      5112 Oct 12 15:17 queuedata.json
[2025-10-13 07:41:48] -rwx------. 1 boinc boinc     36292 Oct 12 15:17 runpilot2-wrapper.sh
[2025-10-13 07:41:48] -rw-r--r--. 1 boinc boinc       100 Oct 13 03:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 07:41:48] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 03:29 run_atlas
[2025-10-13 07:41:48] -rw-r--r--. 1 boinc boinc       105 Oct 13 03:29 job.xml
[2025-10-13 07:41:48] -rw-r--r--. 2 boinc boinc 217826232 Oct 13 03:29 EVNT.46676267._001732.pool.root.1
[2025-10-13 07:41:48] -rw-r--r--. 2 boinc boinc     15120 Oct 13 03:29 start_atlas.sh
[2025-10-13 07:41:48] drwxrwx--x. 2 boinc boinc        68 Oct 13 03:29 shared
[2025-10-13 07:41:48] -rw-r--r--. 2 boinc boinc    569683 Oct 13 03:29 input.tar.gz
[2025-10-13 07:41:48] -rw-r--r--. 1 boinc boinc      6391 Oct 13 03:29 init_data.xml
[2025-10-13 07:41:48] -rw-r--r--. 1 boinc boinc         0 Oct 13 03:29 boinc_lockfile
[2025-10-13 07:41:48] -rw-r--r--. 1 boinc boinc      2547 Oct 13 03:29 pandaJob.out
[2025-10-13 07:41:48] -rw-------. 1 boinc boinc    975595 Oct 13 03:33 agis_schedconf.cvmfs.json
[2025-10-13 07:41:48] drwx------. 5 boinc boinc      4096 Oct 13 03:33 pilot3
[2025-10-13 07:41:48] -rw-------. 1 boinc boinc 193807815 Oct 13 07:37 HITS.46676269._079349.pool.root.1
[2025-10-13 07:41:48] -rw-r--r--. 1 boinc boinc       530 Oct 13 07:37 boinc_task_state.xml
[2025-10-13 07:41:48] -rw-------. 1 boinc boinc      1013 Oct 13 07:38 memory_monitor_summary.json
[2025-10-13 07:41:48] -rw-------. 1 boinc boinc   1560580 Oct 13 07:38 agis_ddmendpoints.agis.ALL.json
[2025-10-13 07:41:48] -rw-------. 1 boinc boinc    445844 Oct 13 07:38 log.46676269._079349.job.log.tgz.1
[2025-10-13 07:41:48] -rw-------. 1 boinc boinc      7776 Oct 13 07:40 heartbeat.json
[2025-10-13 07:41:48] -rw-------. 1 boinc boinc        95 Oct 13 07:41 pilot_heartbeat.json
[2025-10-13 07:41:48] -rw-r--r--. 1 boinc boinc      8192 Oct 13 07:41 boinc_mmap_file
[2025-10-13 07:41:48] -rw-r--r--. 1 boinc boinc        28 Oct 13 07:41 wrapper_checkpoint.txt
[2025-10-13 07:41:48] -rw-------. 1 boinc boinc      5071 Oct 13 07:41 pilotlog.txt
[2025-10-13 07:41:48] -rw-------. 1 boinc boinc   1985013 Oct 13 07:41 log.46676269._079349.job.log.1
[2025-10-13 07:41:48] -rw-------. 1 boinc boinc       357 Oct 13 07:41 output.list
[2025-10-13 07:41:48] -rw-r--r--. 1 boinc boinc       620 Oct 13 07:41 runtime_log
[2025-10-13 07:41:48] -rw-------. 1 boinc boinc   2447360 Oct 13 07:41 result.tar.gz
[2025-10-13 07:41:48] -rw-r--r--. 1 boinc boinc      8717 Oct 13 07:41 runtime_log.err
[2025-10-13 07:41:48] -rw-------. 1 boinc boinc       656 Oct 13 07:41 FhyMDmO8AS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdzjNDmztHc9m.diag
[2025-10-13 07:41:48] -rw-r--r--. 1 boinc boinc     20781 Oct 13 07:41 stderr.txt
[2025-10-13 07:41:48] HITS file was successfully produced:
[2025-10-13 07:41:48] -rw-------. 1 boinc boinc 193807815 Oct 13 07:37 shared/HITS.pool.root.1
[2025-10-13 07:41:48]  *** Contents of shared directory: ***
[2025-10-13 07:41:48] total 404960
[2025-10-13 07:41:48] -rw-r--r--. 2 boinc boinc 217826232 Oct 13 03:29 ATLAS.root_0
[2025-10-13 07:41:48] -rw-r--r--. 2 boinc boinc     15120 Oct 13 03:29 start_atlas.sh
[2025-10-13 07:41:48] -rw-r--r--. 2 boinc boinc    569683 Oct 13 03:29 input.tar.gz
[2025-10-13 07:41:48] -rw-------. 1 boinc boinc 193807815 Oct 13 07:37 HITS.pool.root.1
[2025-10-13 07:41:48] -rw-------. 1 boinc boinc   2447360 Oct 13 07:41 result.tar.gz
07:41:50 (19245): run_atlas exited; CPU time 54894.786574
07:41:50 (19245): called boinc_finish(0)

</stderr_txt>
]]>

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