Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:41:41 (702): wrapper (7.7.26015): starting
12:41:41 (702): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 12:41:41] Arguments: --nthreads 12
[2025-10-12 12:41:41] Threads: 12
[2025-10-12 12:41:41] Checking for CVMFS
[2025-10-12 12:41:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:41:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:41:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:41:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:41:42] 2.11.2.0 2925 223135 100772 151627 1 56 16383048 20275201 1 130560 1 110273898 99.984 13308518 12637 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 12:41:42] CVMFS is ok
[2025-10-12 12:41:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:41:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:41:42] Further information can be found at the LHC@home message board.
[2025-10-12 12:41:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:41:42] Checking for apptainer binary...
[2025-10-12 12:41:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:41:42] Running /usr/bin/apptainer --version
[2025-10-12 12:41:42] apptainer version 1.3.2-1.el7
[2025-10-12 12:41:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:41:43] c-205-9.aglt2.org
[2025-10-12 12:41:43] apptainer works
[2025-10-12 12:41:43] Set ATHENA_PROC_NUMBER=12
[2025-10-12 12:41:43] Set ATHENA_CORE_NUMBER=12
[2025-10-12 12:41:43] Starting ATLAS job with PandaID=6839164530
[2025-10-12 12:41:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:56:10]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:56:10]  scope=mc23_13p6TeV
[2025-10-12 13:56:10]  status=None
[2025-10-12 13:56:10]  status_code=0
[2025-10-12 13:56:10]  storage_token=
[2025-10-12 13:56:10]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839164530/log.46676269._068021.job.log.tgz.1
[2025-10-12 13:56:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/d5/log.46676269._068021.job.log.tgz.1
[2025-10-12 13:56:10]  workdir=None
[2025-10-12 13:56:10] ]
[2025-10-12 13:56:10] 2025-10-12 17:55:17,658 | INFO     | transferring file log.46676269._068021.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839164530/log.46676269._068021.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 13:56:10] 2025-10-12 17:55:17,658 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839164530/log.46676269._068021.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._068021.job
[2025-10-12 13:56:10] 2025-10-12 17:55:17,682 | INFO     | adding to output.list: log.46676269._068021.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/d5/log.46676269._068021.job.log.tg
[2025-10-12 13:56:10] 2025-10-12 17:55:17,683 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 13:56:10] 2025-10-12 17:55:17,683 | INFO     | summary of transferred files:
[2025-10-12 13:56:10] 2025-10-12 17:55:17,683 | INFO     |  -- lfn=log.46676269._068021.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 13:56:10] 2025-10-12 17:55:17,684 | INFO     | stage-out finished correctly
[2025-10-12 13:56:10] 2025-10-12 17:55:18,165 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 13:56:10] 2025-10-12 17:55:18,636 | INFO     | time since job start (4399s) is within the limit (172800.0s)
[2025-10-12 13:56:10] 2025-10-12 17:55:20,642 | INFO     | time since job start (4401s) is within the limit (172800.0s)
[2025-10-12 13:56:10] 2025-10-12 17:55:20,975 | INFO     | job 6839164530 has state=finished
[2025-10-12 13:56:10] 2025-10-12 17:55:20,975 | INFO     | preparing for final server update for job 6839164530 in state='finished'
[2025-10-12 13:56:10] 2025-10-12 17:55:20,976 | INFO     | this job has now completed (state=finished)
[2025-10-12 13:56:10] 2025-10-12 17:55:20,976 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 13:56:10] 2025-10-12 17:55:20,976 | INFO     | log transfer has been attempted: DONE
[2025-10-12 13:56:10] 2025-10-12 17:55:20,976 | INFO     | job 6839164530 has finished - writing final server update
[2025-10-12 13:56:10] 2025-10-12 17:55:20,977 | INFO     | total number of processed events: 400 (read)
[2025-10-12 13:56:10] 2025-10-12 17:55:20,978 | INFO     | executing command: lscpu
[2025-10-12 13:56:10] 2025-10-12 17:55:21,003 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 13:56:10] 2025-10-12 17:55:22,647 | INFO     | time since job start (4403s) is within the limit (172800.0s)
[2025-10-12 13:56:10] 2025-10-12 17:55:22,975 | WARNING  | process 11704 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 13:56:10] 2025-10-12 17:55:22,976 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839164530/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:56:10] 2025-10-12 17:55:23,067 | INFO     | number of running child processes to parent process 11704: 1
[2025-10-12 13:56:10] 2025-10-12 17:55:23,067 | INFO     | maximum number of monitored processes: 6
[2025-10-12 13:56:10] 2025-10-12 17:55:24,649 | INFO     | time since job start (4405s) is within the limit (172800.0s)
[2025-10-12 13:56:10] 2025-10-12 17:55:25,570 | INFO     | monitor loop #328: job 0:6839164530 is in state 'finished'
[2025-10-12 13:56:10] 2025-10-12 17:55:25,570 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:56:10] 2025-10-12 17:55:25,905 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 13:56:10] 2025-10-12 17:55:25,909 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-12 13:56:10] 2025-10-12 17:55:25,911 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839164530/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:56:10] 2025-10-12 17:55:25,911 | INFO     | extracted standard info from prmon json
[2025-10-12 13:56:10] 2025-10-12 17:55:25,911 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 13:56:10] 2025-10-12 17:55:25,912 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:56:10] 2025-10-12 17:55:25,912 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:56:10] 2025-10-12 17:55:25,912 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:56:10] 2025-10-12 17:55:25,914 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:56:10] 2025-10-12 17:55:25,914 | INFO     | sum of square deviations: 85136480.0
[2025-10-12 13:56:10] 2025-10-12 17:55:25,915 | INFO     | sum of deviations: -7039061816.0
[2025-10-12 13:56:10] 2025-10-12 17:55:25,915 | INFO     | mean x: 1760289604.0
[2025-10-12 13:56:10] 2025-10-12 17:55:25,915 | INFO     | mean y: 2784913.7384615387
[2025-10-12 13:56:10] 2025-10-12 17:55:25,915 | INFO     | -- intersect: 145543067253.5552
[2025-10-12 13:56:10] 2025-10-12 17:55:25,915 | INFO     | intersect: 145543067253.5552
[2025-10-12 13:56:10] 2025-10-12 17:55:25,916 | INFO     | chi2: 0.08755402294420396
[2025-10-12 13:56:10] 2025-10-12 17:55:25,916 | INFO     | -- intersect: 145543067253.5552
[2025-10-12 13:56:10] 2025-10-12 17:55:25,916 | INFO     | current memory leak: -82.68 B/s (using 65 data points, chi2=0.09)
[2025-10-12 13:56:10] 2025-10-12 17:55:25,916 | INFO     | could have reported an average CPU frequency of 2043 MHz (6 samples)
[2025-10-12 13:56:10] 2025-10-12 17:55:25,916 | INFO     | ..............................
[2025-10-12 13:56:10] 2025-10-12 17:55:25,917 | INFO     | . Timing measurements:
[2025-10-12 13:56:10] 2025-10-12 17:55:25,917 | INFO     | . get job = 0 s
[2025-10-12 13:56:10] 2025-10-12 17:55:25,917 | INFO     | . initial setup = 2 s
[2025-10-12 13:56:10] 2025-10-12 17:55:25,917 | INFO     | . payload setup = 6 s
[2025-10-12 13:56:10] 2025-10-12 17:55:25,917 | INFO     | . stage-in = 0 s
[2025-10-12 13:56:10] 2025-10-12 17:55:25,917 | INFO     | . payload execution = 4371 s
[2025-10-12 13:56:10] 2025-10-12 17:55:25,917 | INFO     | . stage-out = 0 s
[2025-10-12 13:56:10] 2025-10-12 17:55:25,917 | INFO     | . log creation = 0 s
[2025-10-12 13:56:10] 2025-10-12 17:55:25,918 | INFO     | ..............................
[2025-10-12 13:56:10] 2025-10-12 17:55:26,331 | INFO     | 
[2025-10-12 13:56:10] 2025-10-12 17:55:26,332 | INFO     | job summary report
[2025-10-12 13:56:10] 2025-10-12 17:55:26,332 | INFO     | --------------------------------------------------
[2025-10-12 13:56:10] 2025-10-12 17:55:26,332 | INFO     | PanDA job id: 6839164530
[2025-10-12 13:56:10] 2025-10-12 17:55:26,332 | INFO     | task id: 46676269
[2025-10-12 13:56:10] 2025-10-12 17:55:26,333 | INFO     | errors: (none)
[2025-10-12 13:56:10] 2025-10-12 17:55:26,333 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:56:10] 2025-10-12 17:55:26,333 | INFO     | pilot state: finished 
[2025-10-12 13:56:10] 2025-10-12 17:55:26,333 | INFO     | transexitcode: 0
[2025-10-12 13:56:10] 2025-10-12 17:55:26,333 | INFO     | exeerrorcode: 0
[2025-10-12 13:56:10] 2025-10-12 17:55:26,333 | INFO     | exeerrordiag: 
[2025-10-12 13:56:10] 2025-10-12 17:55:26,333 | INFO     | exitcode: 0
[2025-10-12 13:56:10] 2025-10-12 17:55:26,334 | INFO     | exitmsg: OK
[2025-10-12 13:56:10] 2025-10-12 17:55:26,334 | INFO     | cpuconsumptiontime: 47117 s
[2025-10-12 13:56:10] 2025-10-12 17:55:26,334 | INFO     | nevents: 400
[2025-10-12 13:56:10] 2025-10-12 17:55:26,334 | INFO     | neventsw: 0
[2025-10-12 13:56:10] 2025-10-12 17:55:26,334 | INFO     | pid: 11704
[2025-10-12 13:56:10] 2025-10-12 17:55:26,335 | INFO     | pgrp: 11704
[2025-10-12 13:56:10] 2025-10-12 17:55:26,335 | INFO     | corecount: 12
[2025-10-12 13:56:10] 2025-10-12 17:55:26,335 | INFO     | event service: False
[2025-10-12 13:56:10] 2025-10-12 17:55:26,335 | INFO     | sizes: {0: 2348686, 1: 2348885, 6: 2349147, 12: 2349175, 4382: 2375223, 4383: 2384405, 4391: 2384543}
[2025-10-12 13:56:10] 2025-10-12 17:55:26,335 | INFO     | --------------------------------------------------
[2025-10-12 13:56:10] 2025-10-12 17:55:26,335 | INFO     | 
[2025-10-12 13:56:10] 2025-10-12 17:55:26,336 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 13:56:10] 2025-10-12 17:55:26,360 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:56:10] 2025-10-12 17:55:26,360 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:56:10] 2025-10-12 17:55:26,360 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:56:10] 2025-10-12 17:55:26,360 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:56:10] 2025-10-12 17:55:26,361 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:56:10] 2025-10-12 17:55:26,361 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:56:10] 2025-10-12 17:55:26,361 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:56:10] 2025-10-12 17:55:26,361 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:56:10] 2025-10-12 17:55:26,361 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:56:10] 2025-10-12 17:55:26,362 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:56:10] 2025-10-12 17:55:26,362 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:56:10] 2025-10-12 17:55:26,362 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:56:10] 2025-10-12 17:55:26,362 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:56:10] 2025-10-12 17:55:26,362 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:56:10] 2025-10-12 17:55:26,362 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:56:10] 2025-10-12 17:55:26,363 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:56:10] 2025-10-12 17:55:26,363 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:56:10] 2025-10-12 17:55:26,363 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:56:10] 2025-10-12 17:55:26,363 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:56:10] 2025-10-12 17:55:26,363 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:56:10] 2025-10-12 17:55:26,363 | INFO     | job 6839164530 has completed (purged errors)
[2025-10-12 13:56:10] 2025-10-12 17:55:26,364 | INFO     | overall cleanup function is called
[2025-10-12 13:56:10] 2025-10-12 17:55:27,372 | INFO     | --- collectZombieJob: --- 10, [11704]
[2025-10-12 13:56:10] 2025-10-12 17:55:27,372 | INFO     | zombie collector waiting for pid 11704
[2025-10-12 13:56:10] 2025-10-12 17:55:27,373 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:56:10] 2025-10-12 17:55:27,373 | INFO     | collected zombie processes
[2025-10-12 13:56:10] 2025-10-12 17:55:27,373 | INFO     | will attempt to kill all subprocesses of pid=11704
[2025-10-12 13:56:10] 2025-10-12 17:55:27,465 | INFO     | process IDs to be killed: [11704] (in reverse order)
[2025-10-12 13:56:10] 2025-10-12 17:55:27,518 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:56:10] 2025-10-12 17:55:27,518 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:56:10] 2025-10-12 17:55:27,521 | INFO     | did not find any defunct processes belonging to 11704
[2025-10-12 13:56:10] 2025-10-12 17:55:27,524 | INFO     | did not find any defunct processes belonging to 11704
[2025-10-12 13:56:10] 2025-10-12 17:55:27,524 | INFO     | ready for new job
[2025-10-12 13:56:10] 2025-10-12 17:55:27,524 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:56:10] 2025-10-12 17:55:27,525 | INFO     | ***************************************
[2025-10-12 13:56:10] 2025-10-12 17:55:27,525 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:56:10] 2025-10-12 17:55:27,526 | INFO     | ***************************************
[2025-10-12 13:56:10] 2025-10-12 17:55:27,526 | INFO     | 
[2025-10-12 13:56:10] 2025-10-12 17:55:27,526 | INFO     | architecture information:
[2025-10-12 13:56:10] 2025-10-12 17:55:27,527 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:56:10] 2025-10-12 17:55:27,542 | INFO     | cat /etc/os-release:
[2025-10-12 13:56:10] NAME="CentOS Linux"
[2025-10-12 13:56:10] VERSION="7 (Core)"
[2025-10-12 13:56:10] ID="centos"
[2025-10-12 13:56:10] ID_LIKE="rhel fedora"
[2025-10-12 13:56:10] VERSION_ID="7"
[2025-10-12 13:56:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:56:10] ANSI_COLOR="0;31"
[2025-10-12 13:56:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:56:10] HOME_URL="https://www.centos.org/"
[2025-10-12 13:56:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:56:10] 
[2025-10-12 13:56:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:56:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:56:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:56:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:56:10] 
[2025-10-12 13:56:10] 2025-10-12 17:55:27,542 | INFO     | ***************************************
[2025-10-12 13:56:10] 2025-10-12 17:55:28,045 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 13:56:10] 2025-10-12 17:55:28,063 | INFO     | sufficient remaining disk space (29350690816 B)
[2025-10-12 13:56:10] 2025-10-12 17:55:28,063 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:56:10] 2025-10-12 17:55:28,063 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:56:10] 2025-10-12 17:55:28,063 | INFO     | update_server=False
[2025-10-12 13:56:10] 2025-10-12 17:55:28,064 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:56:10] 2025-10-12 17:55:28,074 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 13:56:10] 2025-10-12 17:55:28,074 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 13:56:10] 2025-10-12 17:55:28,074 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:56:10] 2025-10-12 17:55:28,074 | INFO     | will abort loop
[2025-10-12 13:56:10] 2025-10-12 17:55:28,216 | INFO     | all payload control threads have been joined
[2025-10-12 13:56:10] 2025-10-12 17:55:28,280 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:56:10] 2025-10-12 17:55:28,658 | INFO     | all job control threads have been joined
[2025-10-12 13:56:10] 2025-10-12 17:55:28,757 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:56:10] 2025-10-12 17:55:28,969 | INFO     | all data control threads have been joined
[2025-10-12 13:56:10] 2025-10-12 17:55:29,069 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:56:10] 2025-10-12 17:55:29,074 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:56:10] 2025-10-12 17:55:29,080 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:56:10] 2025-10-12 17:55:29,160 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:56:10] 2025-10-12 17:55:29,222 | INFO     | [payload] control thread has finished
[2025-10-12 13:56:10] 2025-10-12 17:55:29,643 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:56:10] 2025-10-12 17:55:29,663 | INFO     | [job] control thread has finished
[2025-10-12 13:56:10] 2025-10-12 17:55:29,841 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:56:10] 2025-10-12 17:55:29,974 | INFO     | [data] control thread has finished
[2025-10-12 13:56:10] 2025-10-12 17:55:30,285 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:56:10] 2025-10-12 17:55:30,343 | INFO     | [job] validate thread has finished
[2025-10-12 13:56:10] 2025-10-12 17:55:30,349 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:56:10] 2025-10-12 17:55:30,534 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:56:10] 2025-10-12 17:55:30,555 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:56:10] 2025-10-12 17:55:31,016 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:56:10] 2025-10-12 17:55:32,021 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:56:10] 2025-10-12 17:55:32,763 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:56:10] 2025-10-12 17:55:57,857 | INFO     | PID=4551 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 13:56:10] 2025-10-12 17:55:57,857 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:56:10] 2025-10-12 17:55:57,857 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:56:10] 2025-10-12 17:55:57,858 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:56:10] 2025-10-12 17:56:05,417 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:56:10] 2025-10-12 17:56:05,431 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140682033051456)>', '<ExcThread(monitor, started 140681334986496)>']
[2025-10-12 13:56:10] 2025-10-12 17:56:05,898 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:56:10] 2025-10-12 17:56:05,899 | INFO     | [monitor] control thread has ended
[2025-10-12 13:56:10] 2025-10-12 17:56:10,456 | INFO     | all workflow threads have been joined
[2025-10-12 13:56:10] 2025-10-12 17:56:10,457 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:56:10] 2025-10-12 17:56:10,457 | INFO     | traces error code: 0
[2025-10-12 13:56:10] 2025-10-12 17:56:10,457 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:56:10] 2025-10-12 17:56:10,550 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:56:10] 2025-10-12 17:56:10,554 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:56:10] 2025-10-12 17:56:10,558 [wrapper] pilotpid: 4551
[2025-10-12 13:56:10] 2025-10-12 17:56:10,561 [wrapper] Pilot exit status: 0
[2025-10-12 13:56:10] 2025-10-12 17:56:10,575 [wrapper] pandaids: 6839164530
[2025-10-12 13:56:10] 2025-10-12 17:56:10,619 [wrapper] cleanup supervisor_pilot 27324 4552
[2025-10-12 13:56:10] 2025-10-12 17:56:10,623 [wrapper] Test setup, not cleaning
[2025-10-12 13:56:10] 2025-10-12 17:56:10,627 [wrapper] apfmon messages muted
[2025-10-12 13:56:10] 2025-10-12 17:56:10,632 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:56:10] 2025-10-12 17:56:10,636 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:56:10]  *** Error codes and diagnostics ***
[2025-10-12 13:56:10]     "exeErrorCode": 0,
[2025-10-12 13:56:10]     "exeErrorDiag": "",
[2025-10-12 13:56:10]     "pilotErrorCode": 0,
[2025-10-12 13:56:10]     "pilotErrorDiag": "",
[2025-10-12 13:56:10]  *** Listing of results directory ***
[2025-10-12 13:56:10] total 417976
[2025-10-12 13:56:10] -rw-r--r-- 1 boincer umatlas    557409 Oct 11 20:05 pilot3.tar.gz
[2025-10-12 13:56:10] -rwx------ 1 boincer umatlas     36292 Oct 11 20:43 runpilot2-wrapper.sh
[2025-10-12 13:56:10] -rw-r--r-- 1 boincer umatlas      5112 Oct 11 20:43 queuedata.json
[2025-10-12 13:56:10] -rw-r--r-- 1 boincer umatlas       100 Oct 12 12:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:56:10] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 12:41 run_atlas
[2025-10-12 13:56:10] -rw-r--r-- 1 boincer umatlas       105 Oct 12 12:41 job.xml
[2025-10-12 13:56:10] -rw-r--r-- 2 boincer umatlas 224538319 Oct 12 12:41 EVNT.46676267._003109.pool.root.1
[2025-10-12 13:56:10] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:41 start_atlas.sh
[2025-10-12 13:56:10] drwxrwx--x 2 boincer umatlas      4096 Oct 12 12:41 shared
[2025-10-12 13:56:10] -rw-r--r-- 2 boincer umatlas    569677 Oct 12 12:41 input.tar.gz
[2025-10-12 13:56:10] -rw-r--r-- 1 boincer umatlas         0 Oct 12 12:41 boinc_lockfile
[2025-10-12 13:56:10] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 12:41 pandaJob.out
[2025-10-12 13:56:10] -rw------- 1 boincer umatlas    975528 Oct 12 12:41 agis_schedconf.cvmfs.json
[2025-10-12 13:56:10] -rw------- 1 boincer umatlas   1560580 Oct 12 12:41 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:56:10] drwx------ 5 boincer umatlas      4096 Oct 12 12:41 pilot3
[2025-10-12 13:56:10] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 13:47 init_data.xml
[2025-10-12 13:56:10] -rw------- 1 boincer umatlas 197495689 Oct 12 13:54 HITS.46676269._068021.pool.root.1
[2025-10-12 13:56:10] -rw-r--r-- 1 boincer umatlas       529 Oct 12 13:54 boinc_task_state.xml
[2025-10-12 13:56:10] -rw------- 1 boincer umatlas      1049 Oct 12 13:55 memory_monitor_summary.json
[2025-10-12 13:56:10] -rw------- 1 boincer umatlas    395908 Oct 12 13:55 log.46676269._068021.job.log.tgz.1
[2025-10-12 13:56:10] -rw------- 1 boincer umatlas      7858 Oct 12 13:55 heartbeat.json
[2025-10-12 13:56:10] -rw------- 1 boincer umatlas        95 Oct 12 13:55 pilot_heartbeat.json
[2025-10-12 13:56:10] -rw-r--r-- 1 boincer umatlas        27 Oct 12 13:56 wrapper_checkpoint.txt
[2025-10-12 13:56:10] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 13:56 boinc_mmap_file
[2025-10-12 13:56:10] -rw------- 1 boincer umatlas      4931 Oct 12 13:56 pilotlog.txt
[2025-10-12 13:56:10] -rw------- 1 boincer umatlas    640221 Oct 12 13:56 log.46676269._068021.job.log.1
[2025-10-12 13:56:10] -rw------- 1 boincer umatlas       357 Oct 12 13:56 output.list
[2025-10-12 13:56:10] -rw-r--r-- 1 boincer umatlas       620 Oct 12 13:56 runtime_log
[2025-10-12 13:56:10] -rw------- 1 boincer umatlas   1054720 Oct 12 13:56 result.tar.gz
[2025-10-12 13:56:10] -rw-r--r-- 1 boincer umatlas      8700 Oct 12 13:56 runtime_log.err
[2025-10-12 13:56:10] -rw------- 1 boincer umatlas       658 Oct 12 13:56 9JLMDm5LzR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmg7hNDmelc8jm.diag
[2025-10-12 13:56:10] -rw-r--r-- 1 boincer umatlas     21906 Oct 12 13:56 stderr.txt
[2025-10-12 13:56:10] HITS file was successfully produced:
[2025-10-12 13:56:10] -rw------- 1 boincer umatlas 197495689 Oct 12 13:54 shared/HITS.pool.root.1
[2025-10-12 13:56:10]  *** Contents of shared directory: ***
[2025-10-12 13:56:10] total 413756
[2025-10-12 13:56:10] -rw-r--r-- 2 boincer umatlas 224538319 Oct 12 12:41 ATLAS.root_0
[2025-10-12 13:56:10] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:41 start_atlas.sh
[2025-10-12 13:56:10] -rw-r--r-- 2 boincer umatlas    569677 Oct 12 12:41 input.tar.gz
[2025-10-12 13:56:10] -rw------- 1 boincer umatlas 197495689 Oct 12 13:54 HITS.pool.root.1
[2025-10-12 13:56:10] -rw------- 1 boincer umatlas   1054720 Oct 12 13:56 result.tar.gz
13:56:12 (702): run_atlas exited; CPU time 47092.008789
13:56:12 (702): called boinc_finish(0)

</stderr_txt>
]]>

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