Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:26:36 (3907179): wrapper (7.7.26015): starting
04:26:36 (3907179): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 04:26:36] Arguments: --nthreads 4
[2025-10-13 04:26:36] Threads: 4
[2025-10-13 04:26:36] Checking for CVMFS
[2025-10-13 04:26:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 04:26:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 04:26:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 04:26:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 04:26:36] 2.9.2.0 2039669 5158 99776 151645 0 57 26749401 36864001 0 130560 0 4834844 99.990 301792 1173 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 04:26:36] CVMFS is ok
[2025-10-13 04:26:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 04:26:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 04:26:36] Further information can be found at the LHC@home message board.
[2025-10-13 04:26:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 04:26:36] Checking for apptainer binary...
[2025-10-13 04:26:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 04:26:36] Running /usr/bin/apptainer --version
[2025-10-13 04:26:36] apptainer version 1.4.1-1.1
[2025-10-13 04:26:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 04:26:37] thA315a
[2025-10-13 04:26:37] apptainer works
[2025-10-13 04:26:37] Set ATHENA_PROC_NUMBER=4
[2025-10-13 04:26:37] Set ATHENA_CORE_NUMBER=4
[2025-10-13 04:26:37] Starting ATLAS job with PandaID=6839990019
[2025-10-13 04:26:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:34:59]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:34:59] 2025-10-13 03:34:28,875 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:34:59] 2025-10-13 03:34:28,876 | INFO     | did not find any defunct processes belonging to 3917513
[2025-10-13 05:34:59] 2025-10-13 03:34:28,878 | INFO     | did not find any defunct processes belonging to 3917513
[2025-10-13 05:34:59] 2025-10-13 03:34:28,878 | INFO     | ready for new job
[2025-10-13 05:34:59] 2025-10-13 03:34:28,878 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:34:59] 2025-10-13 03:34:28,878 | INFO     | ***************************************
[2025-10-13 05:34:59] 2025-10-13 03:34:28,879 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:34:59] 2025-10-13 03:34:28,879 | INFO     | ***************************************
[2025-10-13 05:34:59] 2025-10-13 03:34:28,879 | INFO     | 
[2025-10-13 05:34:59] 2025-10-13 03:34:28,879 | INFO     | architecture information:
[2025-10-13 05:34:59] 2025-10-13 03:34:28,879 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:34:59] 2025-10-13 03:34:28,892 | INFO     | cat /etc/os-release:
[2025-10-13 05:34:59] NAME="CentOS Linux"
[2025-10-13 05:34:59] VERSION="7 (Core)"
[2025-10-13 05:34:59] ID="centos"
[2025-10-13 05:34:59] ID_LIKE="rhel fedora"
[2025-10-13 05:34:59] VERSION_ID="7"
[2025-10-13 05:34:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:34:59] ANSI_COLOR="0;31"
[2025-10-13 05:34:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:34:59] HOME_URL="https://www.centos.org/"
[2025-10-13 05:34:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:34:59] 
[2025-10-13 05:34:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:34:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:34:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:34:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:34:59] 
[2025-10-13 05:34:59] 2025-10-13 03:34:28,892 | INFO     | ***************************************
[2025-10-13 05:34:59] 2025-10-13 03:34:29,395 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 05:34:59] 2025-10-13 03:34:29,413 | INFO     | sufficient remaining disk space (232596176896 B)
[2025-10-13 05:34:59] 2025-10-13 03:34:29,413 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:34:59] 2025-10-13 03:34:29,413 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:34:59] 2025-10-13 03:34:29,413 | INFO     | update_server=False
[2025-10-13 05:34:59] 2025-10-13 03:34:29,413 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:34:59] 2025-10-13 03:34:29,414 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:34:59] 2025-10-13 03:34:29,414 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:34:59] 2025-10-13 03:34:29,414 | INFO     | aborting loop
[2025-10-13 05:34:59] 2025-10-13 03:34:29,745 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:34:59] 2025-10-13 03:34:29,995 | INFO     | all data control threads have been joined
[2025-10-13 05:34:59] 2025-10-13 03:34:30,201 | INFO     | all payload control threads have been joined
[2025-10-13 05:34:59] 2025-10-13 03:34:30,419 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:34:59] 2025-10-13 03:34:30,420 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:34:59] 2025-10-13 03:34:30,420 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:34:59] 2025-10-13 03:34:30,453 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:34:59] 2025-10-13 03:34:30,581 | INFO     | all job control threads have been joined
[2025-10-13 05:34:59] 2025-10-13 03:34:30,746 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:34:59] 2025-10-13 03:34:30,746 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:34:59] 2025-10-13 03:34:30,849 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:34:59] 2025-10-13 03:34:30,880 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:34:59] 2025-10-13 03:34:31,001 | INFO     | [data] control thread has finished
[2025-10-13 05:34:59] 2025-10-13 03:34:31,207 | INFO     | [payload] control thread has finished
[2025-10-13 05:34:59] 2025-10-13 03:34:31,258 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:34:59] 2025-10-13 03:34:31,587 | INFO     | [job] control thread has finished
[2025-10-13 05:34:59] 2025-10-13 03:34:31,773 | INFO     | [job] validate thread has finished
[2025-10-13 05:34:59] 2025-10-13 03:34:31,895 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:34:59] 2025-10-13 03:34:31,911 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:34:59] 2025-10-13 03:34:32,886 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:34:59] 2025-10-13 03:34:33,752 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:34:59] 2025-10-13 03:34:49,231 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:34:59] 2025-10-13 03:34:50,232 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139914342766400)>', '<ExcThread(monitor, started 139913257285376)>']
[2025-10-13 05:34:59] 2025-10-13 03:34:55,258 | INFO     | all workflow threads have been joined
[2025-10-13 05:34:59] 2025-10-13 03:34:55,258 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:34:59] 2025-10-13 03:34:55,258 | INFO     | traces error code: 0
[2025-10-13 05:34:59] 2025-10-13 03:34:55,258 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:34:59] 2025-10-13 03:34:59,307 | INFO     | PID=3910956 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:34:59] 2025-10-13 03:34:59,307 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:34:59] 2025-10-13 03:34:59,307 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:34:59] 2025-10-13 03:34:59,307 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:34:59] 2025-10-13 03:34:59,307 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:34:59] 2025-10-13 03:34:59,307 | INFO     | [monitor] control thread has ended
[2025-10-13 05:34:59] 2025-10-13 03:34:59,373 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:34:59] 2025-10-13 03:34:59,377 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:34:59] 2025-10-13 03:34:59,380 [wrapper] pilotpid: 3910956
[2025-10-13 05:34:59] 2025-10-13 03:34:59,384 [wrapper] Pilot exit status: 0
[2025-10-13 05:34:59] 2025-10-13 03:34:59,395 [wrapper] pandaids: 6839990019
[2025-10-13 05:34:59] 2025-10-13 03:34:59,415 [wrapper] cleanup supervisor_pilot 3927164 3910957
[2025-10-13 05:34:59] 2025-10-13 03:34:59,419 [wrapper] Test setup, not cleaning
[2025-10-13 05:34:59] 2025-10-13 03:34:59,422 [wrapper] apfmon messages muted
[2025-10-13 05:34:59] 2025-10-13 03:34:59,426 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:34:59] 2025-10-13 03:34:59,429 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:34:59]  *** Error codes and diagnostics ***
[2025-10-13 05:34:59]     "exeErrorCode": 0,
[2025-10-13 05:34:59]     "exeErrorDiag": "",
[2025-10-13 05:34:59]     "pilotErrorCode": 0,
[2025-10-13 05:34:59]     "pilotErrorDiag": "",
[2025-10-13 05:34:59]  *** Listing of results directory ***
[2025-10-13 05:34:59] total 405572
[2025-10-13 05:34:59] -rw-r--r-- 1 boinc boinc    557409 Oct 12 15:05 pilot3.tar.gz
[2025-10-13 05:34:59] -rwx------ 1 boinc boinc     36292 Oct 12 15:08 runpilot2-wrapper.sh
[2025-10-13 05:34:59] -rw-r--r-- 1 boinc boinc      5112 Oct 12 15:08 queuedata.json
[2025-10-13 05:34:59] -rw-r--r-- 1 boinc boinc       100 Oct 13 04:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:34:59] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 04:26 run_atlas
[2025-10-13 05:34:59] -rw-r--r-- 1 boinc boinc       105 Oct 13 04:26 job.xml
[2025-10-13 05:34:59] -rw-r--r-- 2 boinc boinc 218910766 Oct 13 04:26 EVNT.46676267._003854.pool.root.1
[2025-10-13 05:34:59] -rw-r--r-- 2 boinc boinc    569678 Oct 13 04:26 input.tar.gz
[2025-10-13 05:34:59] -rw-r--r-- 2 boinc boinc     15120 Oct 13 04:26 start_atlas.sh
[2025-10-13 05:34:59] drwxrwx--x 2 boinc boinc      4096 Oct 13 04:26 shared
[2025-10-13 05:34:59] -rw-r--r-- 1 boinc boinc         0 Oct 13 04:26 boinc_setup_complete
[2025-10-13 05:34:59] -rw-r--r-- 1 boinc boinc      6371 Oct 13 04:26 init_data.xml
[2025-10-13 05:34:59] -rw-r--r-- 1 boinc boinc         0 Oct 13 04:26 boinc_lockfile
[2025-10-13 05:34:59] -rw-r--r-- 1 boinc boinc      2550 Oct 13 04:26 pandaJob.out
[2025-10-13 05:34:59] -rw------- 1 boinc boinc    974373 Oct 13 04:26 agis_schedconf.cvmfs.json
[2025-10-13 05:34:59] -rw------- 1 boinc boinc   1560580 Oct 13 04:26 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:34:59] drwx------ 5 boinc boinc      4096 Oct 13 04:26 pilot3
[2025-10-13 05:34:59] -rw-r--r-- 1 boinc boinc       529 Oct 13 05:34 boinc_task_state.xml
[2025-10-13 05:34:59] -rw------- 1 boinc boinc 190757034 Oct 13 05:34 HITS.46676269._079177.pool.root.1
[2025-10-13 05:34:59] -rw------- 1 boinc boinc        95 Oct 13 05:34 pilot_heartbeat.json
[2025-10-13 05:34:59] -rw------- 1 boinc boinc      1022 Oct 13 05:34 memory_monitor_summary.json
[2025-10-13 05:34:59] -rw------- 1 boinc boinc    268155 Oct 13 05:34 log.46676269._079177.job.log.tgz.1
[2025-10-13 05:34:59] -rw------- 1 boinc boinc      7781 Oct 13 05:34 heartbeat.json
[2025-10-13 05:34:59] -rw-r--r-- 1 boinc boinc        27 Oct 13 05:34 wrapper_checkpoint.txt
[2025-10-13 05:34:59] -rw-r--r-- 1 boinc boinc      8192 Oct 13 05:34 boinc_mmap_file
[2025-10-13 05:34:59] -rw------- 1 boinc boinc       747 Oct 13 05:34 pilotlog.txt
[2025-10-13 05:34:59] -rw------- 1 boinc boinc    606636 Oct 13 05:34 log.46676269._079177.job.log.1
[2025-10-13 05:34:59] -rw------- 1 boinc boinc       357 Oct 13 05:34 output.list
[2025-10-13 05:34:59] -rw-r--r-- 1 boinc boinc       620 Oct 13 05:34 runtime_log
[2025-10-13 05:34:59] -rw------- 1 boinc boinc    890880 Oct 13 05:34 result.tar.gz
[2025-10-13 05:34:59] -rw-r--r-- 1 boinc boinc      8782 Oct 13 05:34 runtime_log.err
[2025-10-13 05:34:59] -rw------- 1 boinc boinc       659 Oct 13 05:34 4YLMDmOzAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmixjNDmNsOnJo.diag
[2025-10-13 05:34:59] -rw-r--r-- 1 boinc boinc      9863 Oct 13 05:34 stderr.txt
[2025-10-13 05:34:59] HITS file was successfully produced:
[2025-10-13 05:34:59] -rw------- 1 boinc boinc 190757034 Oct 13 05:34 shared/HITS.pool.root.1
[2025-10-13 05:34:59]  *** Contents of shared directory: ***
[2025-10-13 05:34:59] total 401528
[2025-10-13 05:34:59] -rw-r--r-- 2 boinc boinc 218910766 Oct 13 04:26 ATLAS.root_0
[2025-10-13 05:34:59] -rw-r--r-- 2 boinc boinc    569678 Oct 13 04:26 input.tar.gz
[2025-10-13 05:34:59] -rw-r--r-- 2 boinc boinc     15120 Oct 13 04:26 start_atlas.sh
[2025-10-13 05:34:59] -rw------- 1 boinc boinc 190757034 Oct 13 05:34 HITS.pool.root.1
[2025-10-13 05:34:59] -rw------- 1 boinc boinc    890880 Oct 13 05:34 result.tar.gz
05:35:01 (3907179): run_atlas exited; CPU time 15247.370664
05:35:01 (3907179): called boinc_finish(0)

</stderr_txt>
]]>

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