Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
22:18:36 (4132549): wrapper (7.7.26015): starting
22:18:36 (4132549): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 22:18:36] Arguments: --nthreads 12
[2025-10-12 22:18:36] Threads: 12
[2025-10-12 22:18:36] Checking for CVMFS
[2025-10-12 22:18:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 22:18:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 22:18:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 22:18:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 22:18:37] 2.13.2.0 4131061 0 25820 151640 3 8 2424635 4096001 28 130560 0 3558 99.973 1291 1000 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-12 22:18:37] CVMFS is ok
[2025-10-12 22:18:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 22:18:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 22:18:37] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-12 22:18:37] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-12 22:18:37] Further information can be found at the LHC@home message board.
[2025-10-12 22:18:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 22:18:37] Checking for apptainer binary...
[2025-10-12 22:18:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 22:18:37] Running /usr/bin/apptainer --version
[2025-10-12 22:18:37] apptainer version 1.4.3
[2025-10-12 22:18:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 22:18:37] test-run
[2025-10-12 22:18:37] apptainer works
[2025-10-12 22:18:37] Set ATHENA_PROC_NUMBER=12
[2025-10-12 22:18:37] Set ATHENA_CORE_NUMBER=12
[2025-10-12 22:18:37] Starting ATLAS job with PandaID=6839988460
[2025-10-12 22:18:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:47:51]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:47:51]  replicas=None
[2025-10-12 22:47:51]  scope=mc23_13p6TeV
[2025-10-12 22:47:51]  status=None
[2025-10-12 22:47:51]  status_code=0
[2025-10-12 22:47:51]  storage_token=
[2025-10-12 22:47:51]  surl=/var/lib/boinc-client/slots/6/PanDA_Pilot-6839988460/log.46676269._078553.job.log.tgz.1
[2025-10-12 22:47:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/31/log.46676269._078553.job.log.tgz.1
[2025-10-12 22:47:51]  workdir=None
[2025-10-12 22:47:51] ]
[2025-10-12 22:47:51] 2025-10-12 22:46:41,681 | INFO     | transferring file log.46676269._078553.job.log.tgz.1 from /var/lib/boinc-client/slots/6/PanDA_Pilot-6839988460/log.46676269._078553.job.log.tgz.1 to /var/lib/boinc
[2025-10-12 22:47:51] 2025-10-12 22:46:41,681 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/6/PanDA_Pilot-6839988460/log.46676269._078553.job.log.tgz.1 /var/lib/boinc-client/slots/6/log.466762
[2025-10-12 22:47:51] 2025-10-12 22:46:41,686 | INFO     | adding to output.list: log.46676269._078553.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/31/log.46676269._078553.job.log.tg
[2025-10-12 22:47:51] 2025-10-12 22:46:41,686 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 22:47:51] 2025-10-12 22:46:41,686 | INFO     | summary of transferred files:
[2025-10-12 22:47:51] 2025-10-12 22:46:41,686 | INFO     |  -- lfn=log.46676269._078553.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 22:47:51] 2025-10-12 22:46:41,686 | INFO     | stage-out finished correctly
[2025-10-12 22:47:51] 2025-10-12 22:46:41,701 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 22:47:51] 2025-10-12 22:46:41,728 | INFO     | time since job start (1678s) is within the limit (172800.0s)
[2025-10-12 22:47:51] 2025-10-12 22:46:42,748 | INFO     | PID=4139137 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 22:47:51] 2025-10-12 22:46:42,748 | INFO     | .. there are 2 such processes running
[2025-10-12 22:47:51] 2025-10-12 22:46:43,749 | INFO     | time since job start (1680s) is within the limit (172800.0s)
[2025-10-12 22:47:51] 2025-10-12 22:46:44,167 | INFO     | monitor loop #132: job 0:6839988460 is in state 'finished'
[2025-10-12 22:47:51] 2025-10-12 22:46:44,167 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 22:47:51] 2025-10-12 22:46:44,277 | INFO     | job 6839988460 has state=finished
[2025-10-12 22:47:51] 2025-10-12 22:46:44,277 | INFO     | preparing for final server update for job 6839988460 in state='finished'
[2025-10-12 22:47:51] 2025-10-12 22:46:44,277 | INFO     | this job has now completed (state=finished)
[2025-10-12 22:47:51] 2025-10-12 22:46:44,277 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 22:47:51] 2025-10-12 22:46:44,277 | INFO     | log transfer has been attempted: DONE
[2025-10-12 22:47:51] 2025-10-12 22:46:44,277 | INFO     | job 6839988460 has finished - writing final server update
[2025-10-12 22:47:51] 2025-10-12 22:46:44,277 | INFO     | total number of processed events: 400 (read)
[2025-10-12 22:47:51] 2025-10-12 22:46:44,278 | INFO     | executing command: lscpu
[2025-10-12 22:47:51] 2025-10-12 22:46:44,285 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 22:47:51] 2025-10-12 22:46:45,055 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 22:47:51] 2025-10-12 22:46:45,056 | INFO     | found 32 cores (32 cores per socket, 1 socket) , CPU MHz: 4299.979999999998
[2025-10-12 22:47:51] 2025-10-12 22:46:45,057 | INFO     | using path: /var/lib/boinc-client/slots/6/PanDA_Pilot-6839988460/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:47:51] 2025-10-12 22:46:45,057 | INFO     | extracted standard info from prmon json
[2025-10-12 22:47:51] 2025-10-12 22:46:45,057 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 22:47:51] 2025-10-12 22:46:45,057 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 22:47:51] 2025-10-12 22:46:45,057 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 22:47:51] 2025-10-12 22:46:45,057 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 22:47:51] 2025-10-12 22:46:45,057 | INFO     | fitting pss+swap vs Time
[2025-10-12 22:47:51] 2025-10-12 22:46:45,057 | INFO     | sum of square deviations: 2865170.0
[2025-10-12 22:47:51] 2025-10-12 22:46:45,057 | INFO     | sum of deviations: 462111905.0
[2025-10-12 22:47:51] 2025-10-12 22:46:45,057 | INFO     | mean x: 1760308453.0
[2025-10-12 22:47:51] 2025-10-12 22:46:45,057 | INFO     | mean y: 2856848.238095238
[2025-10-12 22:47:51] 2025-10-12 22:46:45,057 | INFO     | -- intersect: -283910311516.4429
[2025-10-12 22:47:51] 2025-10-12 22:46:45,057 | INFO     | intersect: -283910311516.4429
[2025-10-12 22:47:51] 2025-10-12 22:46:45,057 | INFO     | chi2: 0.027193237821012708
[2025-10-12 22:47:51] 2025-10-12 22:46:45,057 | INFO     | -- intersect: -283910311516.4429
[2025-10-12 22:47:51] 2025-10-12 22:46:45,057 | INFO     | current memory leak: 161.29 B/s (using 21 data points, chi2=0.03)
[2025-10-12 22:47:51] 2025-10-12 22:46:45,058 | INFO     | could have reported an average CPU frequency of 4299 MHz (4 samples)
[2025-10-12 22:47:51] 2025-10-12 22:46:45,058 | INFO     | ..............................
[2025-10-12 22:47:51] 2025-10-12 22:46:45,058 | INFO     | . Timing measurements:
[2025-10-12 22:47:51] 2025-10-12 22:46:45,058 | INFO     | . get job = 0 s
[2025-10-12 22:47:51] 2025-10-12 22:46:45,058 | INFO     | . initial setup = 3 s
[2025-10-12 22:47:51] 2025-10-12 22:46:45,058 | INFO     | . payload setup = 1 s
[2025-10-12 22:47:51] 2025-10-12 22:46:45,058 | INFO     | . stage-in = 0 s
[2025-10-12 22:47:51] 2025-10-12 22:46:45,058 | INFO     | . payload execution = 1660 s
[2025-10-12 22:47:51] 2025-10-12 22:46:45,058 | INFO     | . stage-out = 0 s
[2025-10-12 22:47:51] 2025-10-12 22:46:45,058 | INFO     | . log creation = 0 s
[2025-10-12 22:47:51] 2025-10-12 22:46:45,058 | INFO     | ..............................
[2025-10-12 22:47:51] 2025-10-12 22:46:45,075 | INFO     | 
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | job summary report
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | --------------------------------------------------
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | PanDA job id: 6839988460
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | task id: 46676269
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | errors: (none)
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | pilot state: finished 
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | transexitcode: 0
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | exeerrorcode: 0
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | exeerrordiag: 
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | exitcode: 0
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | exitmsg: OK
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | cpuconsumptiontime: 15476 s
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | nevents: 400
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | neventsw: 0
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | pid: 4152426
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | pgrp: 4152426
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | corecount: 12
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | event service: False
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | sizes: {0: 2348637, 1: 2348892, 2: 2349154, 11: 2349182, 1665: 2374036, 1666: 2383232, 1670: 2383370}
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | --------------------------------------------------
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | 
[2025-10-12 22:47:51] 2025-10-12 22:46:45,076 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/6
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | job 6839988460 has completed (purged errors)
[2025-10-12 22:47:51] 2025-10-12 22:46:45,081 | INFO     | overall cleanup function is called
[2025-10-12 22:47:51] 2025-10-12 22:46:46,087 | INFO     | --- collectZombieJob: --- 10, [4152426]
[2025-10-12 22:47:51] 2025-10-12 22:46:46,087 | INFO     | zombie collector waiting for pid 4152426
[2025-10-12 22:47:51] 2025-10-12 22:46:46,087 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:47:51] 2025-10-12 22:46:46,087 | INFO     | collected zombie processes
[2025-10-12 22:47:51] 2025-10-12 22:46:46,087 | INFO     | will attempt to kill all subprocesses of pid=4152426
[2025-10-12 22:47:51] 2025-10-12 22:46:46,100 | INFO     | process IDs to be killed: [4152426] (in reverse order)
[2025-10-12 22:47:51] 2025-10-12 22:46:46,110 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:47:51] 2025-10-12 22:46:46,110 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:47:51] 2025-10-12 22:46:46,111 | INFO     | did not find any defunct processes belonging to 4152426
[2025-10-12 22:47:51] 2025-10-12 22:46:46,111 | INFO     | did not find any defunct processes belonging to 4152426
[2025-10-12 22:47:51] 2025-10-12 22:46:46,111 | INFO     | ready for new job
[2025-10-12 22:47:51] 2025-10-12 22:46:46,111 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:47:51] 2025-10-12 22:46:46,112 | INFO     | ***************************************
[2025-10-12 22:47:51] 2025-10-12 22:46:46,112 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:47:51] 2025-10-12 22:46:46,112 | INFO     | ***************************************
[2025-10-12 22:47:51] 2025-10-12 22:46:46,112 | INFO     | 
[2025-10-12 22:47:51] 2025-10-12 22:46:46,112 | INFO     | pilot is running in a VM
[2025-10-12 22:47:51] 2025-10-12 22:46:46,112 | INFO     | architecture information:
[2025-10-12 22:47:51] 2025-10-12 22:46:46,112 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:47:51] 2025-10-12 22:46:46,114 | INFO     | cat /etc/os-release:
[2025-10-12 22:47:51] NAME="CentOS Linux"
[2025-10-12 22:47:51] VERSION="7 (Core)"
[2025-10-12 22:47:51] ID="centos"
[2025-10-12 22:47:51] ID_LIKE="rhel fedora"
[2025-10-12 22:47:51] VERSION_ID="7"
[2025-10-12 22:47:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:47:51] ANSI_COLOR="0;31"
[2025-10-12 22:47:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:47:51] HOME_URL="https://www.centos.org/"
[2025-10-12 22:47:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:47:51] 
[2025-10-12 22:47:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:47:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:47:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:47:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:47:51] 
[2025-10-12 22:47:51] 2025-10-12 22:46:46,114 | INFO     | ***************************************
[2025-10-12 22:47:51] 2025-10-12 22:46:46,617 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/6
[2025-10-12 22:47:51] 2025-10-12 22:46:46,622 | INFO     | sufficient remaining disk space (25430065152 B)
[2025-10-12 22:47:51] 2025-10-12 22:46:46,622 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:47:51] 2025-10-12 22:46:46,622 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:47:51] 2025-10-12 22:46:46,622 | INFO     | update_server=False
[2025-10-12 22:47:51] 2025-10-12 22:46:46,622 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:47:51] 2025-10-12 22:46:46,622 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:47:51] 2025-10-12 22:46:46,670 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 22:47:51] 2025-10-12 22:46:46,670 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 22:47:51] 2025-10-12 22:46:46,670 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:47:51] 2025-10-12 22:46:46,670 | INFO     | will abort loop
[2025-10-12 22:47:51] 2025-10-12 22:46:46,902 | INFO     | all payload control threads have been joined
[2025-10-12 22:47:51] 2025-10-12 22:46:47,208 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:47:51] 2025-10-12 22:46:47,482 | INFO     | all data control threads have been joined
[2025-10-12 22:47:51] 2025-10-12 22:46:47,627 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:47:51] 2025-10-12 22:46:47,627 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:47:51] 2025-10-12 22:46:47,631 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:47:51] 2025-10-12 22:46:47,675 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:47:51] 2025-10-12 22:46:47,721 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:47:51] 2025-10-12 22:46:47,907 | INFO     | [payload] control thread has finished
[2025-10-12 22:47:51] 2025-10-12 22:46:48,153 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:47:51] 2025-10-12 22:46:48,160 | INFO     | all job control threads have been joined
[2025-10-12 22:47:51] 2025-10-12 22:46:48,488 | INFO     | [data] control thread has finished
[2025-10-12 22:47:51] 2025-10-12 22:46:48,549 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:47:51] 2025-10-12 22:46:48,814 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:47:51] 2025-10-12 22:46:48,985 | INFO     | [job] validate thread has finished
[2025-10-12 22:47:51] 2025-10-12 22:46:49,082 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:47:51] 2025-10-12 22:46:49,092 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:47:51] 2025-10-12 22:46:49,165 | INFO     | [job] control thread has finished
[2025-10-12 22:47:51] 2025-10-12 22:46:49,213 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:47:51] 2025-10-12 22:46:51,726 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:47:51] 2025-10-12 22:46:56,951 | INFO     | job.realtimelogging is not enabled
[2025-10-12 22:47:51] 2025-10-12 22:46:57,956 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:47:51] 2025-10-12 22:47:16,844 | INFO     | PID=4139137 has CPU usage=0.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 22:47:51] 2025-10-12 22:47:16,845 | INFO     | .. there are 2 such processes running
[2025-10-12 22:47:51] 2025-10-12 22:47:16,845 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:47:51] 2025-10-12 22:47:16,845 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:47:51] 2025-10-12 22:47:16,845 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:47:51] 2025-10-12 22:47:45,969 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:47:51] 2025-10-12 22:47:46,833 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 133308674463552)>', '<ExcThread(monitor, started 133308176385792)>']
[2025-10-12 22:47:51] 2025-10-12 22:47:46,991 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:47:51] 2025-10-12 22:47:46,991 | INFO     | [monitor] control thread has ended
[2025-10-12 22:47:51] 2025-10-12 22:47:51,856 | INFO     | all workflow threads have been joined
[2025-10-12 22:47:51] 2025-10-12 22:47:51,856 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:47:51] 2025-10-12 22:47:51,856 | INFO     | traces error code: 0
[2025-10-12 22:47:51] 2025-10-12 22:47:51,856 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:47:51] 2025-10-12 22:47:51,885 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:47:51] 2025-10-12 22:47:51,887 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:47:51] 2025-10-12 22:47:51,888 [wrapper] pilotpid: 4139137
[2025-10-12 22:47:51] 2025-10-12 22:47:51,889 [wrapper] Pilot exit status: 0
[2025-10-12 22:47:51] 2025-10-12 22:47:51,892 [wrapper] pandaids: 6839988460
[2025-10-12 22:47:51] 2025-10-12 22:47:51,904 [wrapper] cleanup supervisor_pilot 4166009 4139139
[2025-10-12 22:47:51] 2025-10-12 22:47:51,905 [wrapper] Test setup, not cleaning
[2025-10-12 22:47:51] 2025-10-12 22:47:51,906 [wrapper] apfmon messages muted
[2025-10-12 22:47:51] 2025-10-12 22:47:51,907 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:47:51] 2025-10-12 22:47:51,908 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:47:51]  *** Error codes and diagnostics ***
[2025-10-12 22:47:51]     "exeErrorCode": 0,
[2025-10-12 22:47:51]     "exeErrorDiag": "",
[2025-10-12 22:47:51]     "pilotErrorCode": 0,
[2025-10-12 22:47:51]     "pilotErrorDiag": "",
[2025-10-12 22:47:51]  *** Listing of results directory ***
[2025-10-12 22:47:51] total 407212
[2025-10-12 22:47:51] -rw-r--r-- 1 boinc boinc    557409 Oct 12 12:35 pilot3.tar.gz
[2025-10-12 22:47:51] -rwx------ 1 boinc boinc     36292 Oct 12 12:45 runpilot2-wrapper.sh
[2025-10-12 22:47:51] -rw-r--r-- 1 boinc boinc      5112 Oct 12 12:45 queuedata.json
[2025-10-12 22:47:51] -rw-r--r-- 1 boinc boinc       100 Oct 12 22:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:47:51] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 22:18 run_atlas
[2025-10-12 22:47:51] -rw-r--r-- 1 boinc boinc       105 Oct 12 22:18 job.xml
[2025-10-12 22:47:51] -rw-r--r-- 2 boinc boinc     15120 Oct 12 22:18 start_atlas.sh
[2025-10-12 22:47:51] drwxrwx--x 2 boinc boinc      4096 Oct 12 22:18 shared
[2025-10-12 22:47:51] -rw-r--r-- 2 boinc boinc    569675 Oct 12 22:18 input.tar.gz
[2025-10-12 22:47:51] -rw-r--r-- 1 boinc boinc      6938 Oct 12 22:18 init_data.xml
[2025-10-12 22:47:51] -rw-r--r-- 2 boinc boinc 222810893 Oct 12 22:18 EVNT.46676267._003811.pool.root.1
[2025-10-12 22:47:51] -rw-r--r-- 1 boinc boinc         0 Oct 12 22:18 boinc_lockfile
[2025-10-12 22:47:51] -rw-r--r-- 1 boinc boinc      2550 Oct 12 22:18 pandaJob.out
[2025-10-12 22:47:51] -rw------- 1 boinc boinc    975603 Oct 12 22:18 agis_schedconf.cvmfs.json
[2025-10-12 22:47:51] -rw------- 1 boinc boinc   1560580 Oct 12 22:18 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:47:51] drwx------ 5 boinc boinc      4096 Oct 12 22:18 pilot3
[2025-10-12 22:47:51] -rw------- 1 boinc boinc 188975015 Oct 12 22:46 HITS.46676269._078553.pool.root.1
[2025-10-12 22:47:51] -rw-r--r-- 1 boinc boinc       529 Oct 12 22:46 boinc_task_state.xml
[2025-10-12 22:47:51] -rw------- 1 boinc boinc      1018 Oct 12 22:46 memory_monitor_summary.json
[2025-10-12 22:47:51] -rw------- 1 boinc boinc    354665 Oct 12 22:46 log.46676269._078553.job.log.tgz.1
[2025-10-12 22:47:51] -rw------- 1 boinc boinc      7736 Oct 12 22:46 heartbeat.json
[2025-10-12 22:47:51] -rw------- 1 boinc boinc        95 Oct 12 22:47 pilot_heartbeat.json
[2025-10-12 22:47:51] -rw-r--r-- 1 boinc boinc      8192 Oct 12 22:47 boinc_mmap_file
[2025-10-12 22:47:51] -rw-r--r-- 1 boinc boinc        27 Oct 12 22:47 wrapper_checkpoint.txt
[2025-10-12 22:47:51] -rw------- 1 boinc boinc      5150 Oct 12 22:47 pilotlog.txt
[2025-10-12 22:47:51] -rw------- 1 boinc boinc    289329 Oct 12 22:47 log.46676269._078553.job.log.1
[2025-10-12 22:47:51] -rw------- 1 boinc boinc       357 Oct 12 22:47 output.list
[2025-10-12 22:47:51] -rw-r--r-- 1 boinc boinc       620 Oct 12 22:47 runtime_log
[2025-10-12 22:47:51] -rw------- 1 boinc boinc    665600 Oct 12 22:47 result.tar.gz
[2025-10-12 22:47:51] -rw-r--r-- 1 boinc boinc      8762 Oct 12 22:47 runtime_log.err
[2025-10-12 22:47:51] -rw------- 1 boinc boinc       642 Oct 12 22:47 OmaLDmAdAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5qjNDmonXwAo.diag
[2025-10-12 22:47:51] -rw-r--r-- 1 boinc boinc     22010 Oct 12 22:47 stderr.txt
[2025-10-12 22:47:51] HITS file was successfully produced:
[2025-10-12 22:47:51] -rw------- 1 boinc boinc 188975015 Oct 12 22:46 shared/HITS.pool.root.1
[2025-10-12 22:47:51]  *** Contents of shared directory: ***
[2025-10-12 22:47:51] total 403376
[2025-10-12 22:47:51] -rw-r--r-- 2 boinc boinc     15120 Oct 12 22:18 start_atlas.sh
[2025-10-12 22:47:51] -rw-r--r-- 2 boinc boinc    569675 Oct 12 22:18 input.tar.gz
[2025-10-12 22:47:51] -rw-r--r-- 2 boinc boinc 222810893 Oct 12 22:18 ATLAS.root_0
[2025-10-12 22:47:51] -rw------- 1 boinc boinc 188975015 Oct 12 22:46 HITS.pool.root.1
[2025-10-12 22:47:51] -rw------- 1 boinc boinc    665600 Oct 12 22:47 result.tar.gz
22:47:53 (4132549): run_atlas exited; CPU time 15481.133919
22:47:53 (4132549): called boinc_finish(0)

</stderr_txt>
]]>

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