Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:40:39 (29713): wrapper (7.7.26015): starting
12:40:39 (29713): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 12:40:39] Arguments: --nthreads 12
[2025-10-12 12:40:39] Threads: 12
[2025-10-12 12:40:39] Checking for CVMFS
[2025-10-12 12:40:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:40:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:40:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:40:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:40:39] 2.11.2.0 25590 123815 93552 151627 1 56 15148458 20275201 1 130560 2 77878006 99.991 3965075 22040 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 12:40:39] CVMFS is ok
[2025-10-12 12:40:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:40:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:40:39] Further information can be found at the LHC@home message board.
[2025-10-12 12:40:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:40:39] Checking for apptainer binary...
[2025-10-12 12:40:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:40:39] Running /usr/bin/apptainer --version
[2025-10-12 12:40:39] apptainer version 1.3.2-1.el7
[2025-10-12 12:40:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:40:41] c-205-24.aglt2.org
[2025-10-12 12:40:41] apptainer works
[2025-10-12 12:40:41] Set ATHENA_PROC_NUMBER=12
[2025-10-12 12:40:41] Set ATHENA_CORE_NUMBER=12
[2025-10-12 12:40:41] Starting ATLAS job with PandaID=6839870912
[2025-10-12 12:40:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:52:09]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:52:09]  lfn=log.46676269._077149.job.log.tgz.1
[2025-10-12 13:52:09]  mtime=0
[2025-10-12 13:52:09]  protocol_id=None
[2025-10-12 13:52:09]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 13:52:09]  replicas=None
[2025-10-12 13:52:09]  scope=mc23_13p6TeV
[2025-10-12 13:52:09]  status=None
[2025-10-12 13:52:09]  status_code=0
[2025-10-12 13:52:09]  storage_token=
[2025-10-12 13:52:09]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839870912/log.46676269._077149.job.log.tgz.1
[2025-10-12 13:52:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6e/e4/log.46676269._077149.job.log.tgz.1
[2025-10-12 13:52:09]  workdir=None
[2025-10-12 13:52:09] ]
[2025-10-12 13:52:09] 2025-10-12 17:51:14,818 | INFO     | transferring file log.46676269._077149.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839870912/log.46676269._077149.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 13:52:09] 2025-10-12 17:51:14,818 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839870912/log.46676269._077149.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._077149.job
[2025-10-12 13:52:09] 2025-10-12 17:51:14,841 | INFO     | adding to output.list: log.46676269._077149.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6e/e4/log.46676269._077149.job.log.tg
[2025-10-12 13:52:09] 2025-10-12 17:51:14,842 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 13:52:09] 2025-10-12 17:51:14,842 | INFO     | summary of transferred files:
[2025-10-12 13:52:09] 2025-10-12 17:51:14,842 | INFO     |  -- lfn=log.46676269._077149.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 13:52:09] 2025-10-12 17:51:14,842 | INFO     | stage-out finished correctly
[2025-10-12 13:52:09] 2025-10-12 17:51:14,856 | INFO     | time since job start (4218s) is within the limit (172800.0s)
[2025-10-12 13:52:09] 2025-10-12 17:51:15,626 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 13:52:09] 2025-10-12 17:51:15,706 | INFO     | job 6839870912 has state=finished
[2025-10-12 13:52:09] 2025-10-12 17:51:15,706 | INFO     | preparing for final server update for job 6839870912 in state='finished'
[2025-10-12 13:52:09] 2025-10-12 17:51:15,707 | INFO     | this job has now completed (state=finished)
[2025-10-12 13:52:09] 2025-10-12 17:51:15,707 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 13:52:09] 2025-10-12 17:51:15,707 | INFO     | log transfer has been attempted: DONE
[2025-10-12 13:52:09] 2025-10-12 17:51:15,707 | INFO     | job 6839870912 has finished - writing final server update
[2025-10-12 13:52:09] 2025-10-12 17:51:15,708 | INFO     | total number of processed events: 400 (read)
[2025-10-12 13:52:09] 2025-10-12 17:51:15,708 | INFO     | executing command: lscpu
[2025-10-12 13:52:09] 2025-10-12 17:51:15,733 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 13:52:09] 2025-10-12 17:51:16,861 | INFO     | time since job start (4220s) is within the limit (172800.0s)
[2025-10-12 13:52:09] 2025-10-12 17:51:17,229 | INFO     | monitor loop #317: job 0:6839870912 is in state 'finished'
[2025-10-12 13:52:09] 2025-10-12 17:51:17,229 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:52:09] 2025-10-12 17:51:18,873 | INFO     | time since job start (4222s) is within the limit (172800.0s)
[2025-10-12 13:52:09] 2025-10-12 17:51:19,732 | INFO     | monitor loop #318: job 0:6839870912 is in state 'finished'
[2025-10-12 13:52:09] 2025-10-12 17:51:19,732 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:52:09] 2025-10-12 17:51:20,567 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 13:52:09] 2025-10-12 17:51:20,570 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.8333333333333
[2025-10-12 13:52:09] 2025-10-12 17:51:20,572 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839870912/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:52:09] 2025-10-12 17:51:20,573 | INFO     | extracted standard info from prmon json
[2025-10-12 13:52:09] 2025-10-12 17:51:20,573 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 13:52:09] 2025-10-12 17:51:20,573 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:52:09] 2025-10-12 17:51:20,573 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:52:09] 2025-10-12 17:51:20,573 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:52:09] 2025-10-12 17:51:20,575 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:52:09] 2025-10-12 17:51:20,575 | INFO     | sum of square deviations: 73882315.5
[2025-10-12 13:52:09] 2025-10-12 17:51:20,575 | INFO     | sum of deviations: -7245046371.999999
[2025-10-12 13:52:09] 2025-10-12 17:51:20,575 | INFO     | mean x: 1760289450.5
[2025-10-12 13:52:09] 2025-10-12 17:51:20,575 | INFO     | mean y: 2800174.806451613
[2025-10-12 13:52:09] 2025-10-12 17:51:20,576 | INFO     | -- intersect: 172620274474.38898
[2025-10-12 13:52:09] 2025-10-12 17:51:20,576 | INFO     | intersect: 172620274474.38898
[2025-10-12 13:52:09] 2025-10-12 17:51:20,576 | INFO     | chi2: 0.04593569768914708
[2025-10-12 13:52:09] 2025-10-12 17:51:20,576 | INFO     | -- intersect: 172620274474.38898
[2025-10-12 13:52:09] 2025-10-12 17:51:20,576 | INFO     | current memory leak: -98.06 B/s (using 62 data points, chi2=0.05)
[2025-10-12 13:52:09] 2025-10-12 17:51:20,576 | INFO     | could have reported an average CPU frequency of 2041 MHz (6 samples)
[2025-10-12 13:52:09] 2025-10-12 17:51:20,577 | INFO     | ..............................
[2025-10-12 13:52:09] 2025-10-12 17:51:20,577 | INFO     | . Timing measurements:
[2025-10-12 13:52:09] 2025-10-12 17:51:20,577 | INFO     | . get job = 0 s
[2025-10-12 13:52:09] 2025-10-12 17:51:20,577 | INFO     | . initial setup = 2 s
[2025-10-12 13:52:09] 2025-10-12 17:51:20,577 | INFO     | . payload setup = 7 s
[2025-10-12 13:52:09] 2025-10-12 17:51:20,577 | INFO     | . stage-in = 0 s
[2025-10-12 13:52:09] 2025-10-12 17:51:20,577 | INFO     | . payload execution = 4189 s
[2025-10-12 13:52:09] 2025-10-12 17:51:20,577 | INFO     | . stage-out = 0 s
[2025-10-12 13:52:09] 2025-10-12 17:51:20,577 | INFO     | . log creation = 0 s
[2025-10-12 13:52:09] 2025-10-12 17:51:20,577 | INFO     | ..............................
[2025-10-12 13:52:09] 2025-10-12 17:51:20,659 | INFO     | 
[2025-10-12 13:52:09] 2025-10-12 17:51:20,660 | INFO     | job summary report
[2025-10-12 13:52:09] 2025-10-12 17:51:20,660 | INFO     | --------------------------------------------------
[2025-10-12 13:52:09] 2025-10-12 17:51:20,660 | INFO     | PanDA job id: 6839870912
[2025-10-12 13:52:09] 2025-10-12 17:51:20,660 | INFO     | task id: 46676269
[2025-10-12 13:52:09] 2025-10-12 17:51:20,660 | INFO     | errors: (none)
[2025-10-12 13:52:09] 2025-10-12 17:51:20,661 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:52:09] 2025-10-12 17:51:20,661 | INFO     | pilot state: finished 
[2025-10-12 13:52:09] 2025-10-12 17:51:20,661 | INFO     | transexitcode: 0
[2025-10-12 13:52:09] 2025-10-12 17:51:20,661 | INFO     | exeerrorcode: 0
[2025-10-12 13:52:09] 2025-10-12 17:51:20,661 | INFO     | exeerrordiag: 
[2025-10-12 13:52:09] 2025-10-12 17:51:20,661 | INFO     | exitcode: 0
[2025-10-12 13:52:09] 2025-10-12 17:51:20,661 | INFO     | exitmsg: OK
[2025-10-12 13:52:09] 2025-10-12 17:51:20,662 | INFO     | cpuconsumptiontime: 45410 s
[2025-10-12 13:52:09] 2025-10-12 17:51:20,662 | INFO     | nevents: 400
[2025-10-12 13:52:09] 2025-10-12 17:51:20,662 | INFO     | neventsw: 0
[2025-10-12 13:52:09] 2025-10-12 17:51:20,662 | INFO     | pid: 7538
[2025-10-12 13:52:09] 2025-10-12 17:51:20,662 | INFO     | pgrp: 7538
[2025-10-12 13:52:09] 2025-10-12 17:51:20,662 | INFO     | corecount: 12
[2025-10-12 13:52:09] 2025-10-12 17:51:20,663 | INFO     | event service: False
[2025-10-12 13:52:09] 2025-10-12 17:51:20,663 | INFO     | sizes: {0: 2348856, 5: 2349118, 11: 2349174, 4200: 2375098, 4202: 2384096, 4203: 2384152, 4208: 2384474}
[2025-10-12 13:52:09] 2025-10-12 17:51:20,663 | INFO     | --------------------------------------------------
[2025-10-12 13:52:09] 2025-10-12 17:51:20,663 | INFO     | 
[2025-10-12 13:52:09] 2025-10-12 17:51:20,663 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 13:52:09] 2025-10-12 17:51:20,689 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:52:09] 2025-10-12 17:51:20,690 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:52:09] 2025-10-12 17:51:20,690 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:52:09] 2025-10-12 17:51:20,690 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:52:09] 2025-10-12 17:51:20,690 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:52:09] 2025-10-12 17:51:20,690 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:52:09] 2025-10-12 17:51:20,691 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:52:09] 2025-10-12 17:51:20,691 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:52:09] 2025-10-12 17:51:20,691 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:52:09] 2025-10-12 17:51:20,691 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:52:09] 2025-10-12 17:51:20,691 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:52:09] 2025-10-12 17:51:20,692 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:52:09] 2025-10-12 17:51:20,692 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:52:09] 2025-10-12 17:51:20,692 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:52:09] 2025-10-12 17:51:20,692 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:52:09] 2025-10-12 17:51:20,692 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:52:09] 2025-10-12 17:51:20,692 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:52:09] 2025-10-12 17:51:20,693 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:52:09] 2025-10-12 17:51:20,693 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:52:09] 2025-10-12 17:51:20,693 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:52:09] 2025-10-12 17:51:20,693 | INFO     | job 6839870912 has completed (purged errors)
[2025-10-12 13:52:09] 2025-10-12 17:51:20,693 | INFO     | overall cleanup function is called
[2025-10-12 13:52:09] 2025-10-12 17:51:21,702 | INFO     | --- collectZombieJob: --- 10, [7538]
[2025-10-12 13:52:09] 2025-10-12 17:51:21,702 | INFO     | zombie collector waiting for pid 7538
[2025-10-12 13:52:09] 2025-10-12 17:51:21,702 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:52:09] 2025-10-12 17:51:21,702 | INFO     | collected zombie processes
[2025-10-12 13:52:09] 2025-10-12 17:51:21,702 | INFO     | will attempt to kill all subprocesses of pid=7538
[2025-10-12 13:52:09] 2025-10-12 17:51:21,793 | INFO     | process IDs to be killed: [7538] (in reverse order)
[2025-10-12 13:52:09] 2025-10-12 17:51:21,846 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:52:09] 2025-10-12 17:51:21,846 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:52:09] 2025-10-12 17:51:21,850 | INFO     | did not find any defunct processes belonging to 7538
[2025-10-12 13:52:09] 2025-10-12 17:51:21,853 | INFO     | did not find any defunct processes belonging to 7538
[2025-10-12 13:52:09] 2025-10-12 17:51:21,853 | INFO     | ready for new job
[2025-10-12 13:52:09] 2025-10-12 17:51:21,853 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:52:09] 2025-10-12 17:51:21,854 | INFO     | ***************************************
[2025-10-12 13:52:09] 2025-10-12 17:51:21,854 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:52:09] 2025-10-12 17:51:21,855 | INFO     | ***************************************
[2025-10-12 13:52:09] 2025-10-12 17:51:21,855 | INFO     | 
[2025-10-12 13:52:09] 2025-10-12 17:51:21,855 | INFO     | architecture information:
[2025-10-12 13:52:09] 2025-10-12 17:51:21,856 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:52:09] 2025-10-12 17:51:21,872 | INFO     | cat /etc/os-release:
[2025-10-12 13:52:09] NAME="CentOS Linux"
[2025-10-12 13:52:09] VERSION="7 (Core)"
[2025-10-12 13:52:09] ID="centos"
[2025-10-12 13:52:09] ID_LIKE="rhel fedora"
[2025-10-12 13:52:09] VERSION_ID="7"
[2025-10-12 13:52:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:52:09] ANSI_COLOR="0;31"
[2025-10-12 13:52:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:52:09] HOME_URL="https://www.centos.org/"
[2025-10-12 13:52:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:52:09] 
[2025-10-12 13:52:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:52:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:52:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:52:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:52:09] 
[2025-10-12 13:52:09] 2025-10-12 17:51:21,873 | INFO     | ***************************************
[2025-10-12 13:52:09] 2025-10-12 17:51:22,380 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 13:52:09] 2025-10-12 17:51:22,397 | INFO     | sufficient remaining disk space (29371662336 B)
[2025-10-12 13:52:09] 2025-10-12 17:51:22,397 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:52:09] 2025-10-12 17:51:22,397 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:52:09] 2025-10-12 17:51:22,398 | INFO     | update_server=False
[2025-10-12 13:52:09] 2025-10-12 17:51:22,398 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:52:09] 2025-10-12 17:51:22,398 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:52:09] 2025-10-12 17:51:22,399 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:52:09] 2025-10-12 17:51:22,643 | INFO     | all payload control threads have been joined
[2025-10-12 13:52:09] 2025-10-12 17:51:22,939 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:52:09] 2025-10-12 17:51:23,210 | INFO     | all job control threads have been joined
[2025-10-12 13:52:09] 2025-10-12 17:51:23,241 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:52:09] 2025-10-12 17:51:23,241 | INFO     | aborting loop
[2025-10-12 13:52:09] 2025-10-12 17:51:23,401 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:52:09] 2025-10-12 17:51:23,404 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:52:09] 2025-10-12 17:51:23,405 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:52:09] 2025-10-12 17:51:23,417 | INFO     | all data control threads have been joined
[2025-10-12 13:52:09] 2025-10-12 17:51:23,577 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:52:09] 2025-10-12 17:51:23,614 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:52:09] 2025-10-12 17:51:23,649 | INFO     | [payload] control thread has finished
[2025-10-12 13:52:09] 2025-10-12 17:51:24,212 | INFO     | [job] control thread has finished
[2025-10-12 13:52:09] 2025-10-12 17:51:24,245 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:52:09] 2025-10-12 17:51:24,246 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:52:09] 2025-10-12 17:51:24,406 | INFO     | [job] validate thread has finished
[2025-10-12 13:52:09] 2025-10-12 17:51:24,423 | INFO     | [data] control thread has finished
[2025-10-12 13:52:09] 2025-10-12 17:51:24,585 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:52:09] 2025-10-12 17:51:24,720 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:52:09] 2025-10-12 17:51:24,731 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:52:09] 2025-10-12 17:51:24,944 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:52:09] 2025-10-12 17:51:26,401 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:52:09] 2025-10-12 17:51:52,081 | INFO     | PID=931 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-10-12 13:52:09] 2025-10-12 17:51:52,083 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:52:09] 2025-10-12 17:51:52,083 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:52:09] 2025-10-12 17:51:52,083 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:52:09] 2025-10-12 17:52:02,818 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:52:09] 2025-10-12 17:52:03,862 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140577752119104)>', '<ExcThread(monitor, started 140577089775360)>']
[2025-10-12 13:52:09] 2025-10-12 17:52:04,140 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:52:09] 2025-10-12 17:52:04,140 | INFO     | [monitor] control thread has ended
[2025-10-12 13:52:09] 2025-10-12 17:52:08,868 | INFO     | all workflow threads have been joined
[2025-10-12 13:52:09] 2025-10-12 17:52:08,868 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:52:09] 2025-10-12 17:52:08,869 | INFO     | traces error code: 0
[2025-10-12 13:52:09] 2025-10-12 17:52:08,869 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:52:09] 2025-10-12 17:52:08,971 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:52:09] 2025-10-12 17:52:08,975 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:52:09] 2025-10-12 17:52:08,979 [wrapper] pilotpid: 931
[2025-10-12 13:52:09] 2025-10-12 17:52:08,984 [wrapper] Pilot exit status: 0
[2025-10-12 13:52:09] 2025-10-12 17:52:09,001 [wrapper] pandaids: 6839870912
[2025-10-12 13:52:09] 2025-10-12 17:52:09,051 [wrapper] cleanup supervisor_pilot 24562 932
[2025-10-12 13:52:09] 2025-10-12 17:52:09,055 [wrapper] Test setup, not cleaning
[2025-10-12 13:52:09] 2025-10-12 17:52:09,060 [wrapper] apfmon messages muted
[2025-10-12 13:52:09] 2025-10-12 17:52:09,063 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:52:09] 2025-10-12 17:52:09,067 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:52:09]  *** Error codes and diagnostics ***
[2025-10-12 13:52:09]     "exeErrorCode": 0,
[2025-10-12 13:52:09]     "exeErrorDiag": "",
[2025-10-12 13:52:09]     "pilotErrorCode": 0,
[2025-10-12 13:52:09]     "pilotErrorDiag": "",
[2025-10-12 13:52:09]  *** Listing of results directory ***
[2025-10-12 13:52:09] total 406184
[2025-10-12 13:52:09] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 07:23 pilot3.tar.gz
[2025-10-12 13:52:09] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 07:27 queuedata.json
[2025-10-12 13:52:09] -rwx------ 1 boincer umatlas     36292 Oct 12 07:28 runpilot2-wrapper.sh
[2025-10-12 13:52:09] -rw-r--r-- 1 boincer umatlas       100 Oct 12 12:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:52:09] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 12:40 run_atlas
[2025-10-12 13:52:09] -rw-r--r-- 1 boincer umatlas       105 Oct 12 12:40 job.xml
[2025-10-12 13:52:09] -rw-r--r-- 2 boincer umatlas 219091866 Oct 12 12:40 EVNT.46676267._003680.pool.root.1
[2025-10-12 13:52:09] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:40 start_atlas.sh
[2025-10-12 13:52:09] drwxrwx--x 2 boincer umatlas      4096 Oct 12 12:40 shared
[2025-10-12 13:52:09] -rw-r--r-- 2 boincer umatlas    569687 Oct 12 12:40 input.tar.gz
[2025-10-12 13:52:09] -rw-r--r-- 1 boincer umatlas         0 Oct 12 12:40 boinc_lockfile
[2025-10-12 13:52:09] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 12:40 pandaJob.out
[2025-10-12 13:52:09] -rw------- 1 boincer umatlas    975528 Oct 12 12:40 agis_schedconf.cvmfs.json
[2025-10-12 13:52:09] -rw------- 1 boincer umatlas   1560580 Oct 12 12:40 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:52:09] drwx------ 5 boincer umatlas      4096 Oct 12 12:40 pilot3
[2025-10-12 13:52:09] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 13:45 init_data.xml
[2025-10-12 13:52:09] -rw------- 1 boincer umatlas 190951382 Oct 12 13:50 HITS.46676269._077149.pool.root.1
[2025-10-12 13:52:09] -rw-r--r-- 1 boincer umatlas       529 Oct 12 13:51 boinc_task_state.xml
[2025-10-12 13:52:09] -rw------- 1 boincer umatlas      1062 Oct 12 13:51 memory_monitor_summary.json
[2025-10-12 13:52:09] -rw------- 1 boincer umatlas    376313 Oct 12 13:51 log.46676269._077149.job.log.tgz.1
[2025-10-12 13:52:09] -rw------- 1 boincer umatlas      7856 Oct 12 13:51 heartbeat.json
[2025-10-12 13:52:09] -rw-r--r-- 1 boincer umatlas        27 Oct 12 13:51 wrapper_checkpoint.txt
[2025-10-12 13:52:09] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 13:51 boinc_mmap_file
[2025-10-12 13:52:09] -rw------- 1 boincer umatlas        95 Oct 12 13:51 pilot_heartbeat.json
[2025-10-12 13:52:09] -rw------- 1 boincer umatlas      4744 Oct 12 13:52 pilotlog.txt
[2025-10-12 13:52:09] -rw------- 1 boincer umatlas    616052 Oct 12 13:52 log.46676269._077149.job.log.1
[2025-10-12 13:52:09] -rw------- 1 boincer umatlas       357 Oct 12 13:52 output.list
[2025-10-12 13:52:09] -rw-r--r-- 1 boincer umatlas       620 Oct 12 13:52 runtime_log
[2025-10-12 13:52:09] -rw------- 1 boincer umatlas   1013760 Oct 12 13:52 result.tar.gz
[2025-10-12 13:52:09] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 13:52 runtime_log.err
[2025-10-12 13:52:09] -rw------- 1 boincer umatlas       659 Oct 12 13:52 MIKODm8Q9R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmLlTMDm9B1lfn.diag
[2025-10-12 13:52:09] -rw-r--r-- 1 boincer umatlas     21621 Oct 12 13:52 stderr.txt
[2025-10-12 13:52:09] HITS file was successfully produced:
[2025-10-12 13:52:09] -rw------- 1 boincer umatlas 190951382 Oct 12 13:50 shared/HITS.pool.root.1
[2025-10-12 13:52:09]  *** Contents of shared directory: ***
[2025-10-12 13:52:09] total 402008
[2025-10-12 13:52:09] -rw-r--r-- 2 boincer umatlas 219091866 Oct 12 12:40 ATLAS.root_0
[2025-10-12 13:52:09] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:40 start_atlas.sh
[2025-10-12 13:52:09] -rw-r--r-- 2 boincer umatlas    569687 Oct 12 12:40 input.tar.gz
[2025-10-12 13:52:09] -rw------- 1 boincer umatlas 190951382 Oct 12 13:50 HITS.pool.root.1
[2025-10-12 13:52:09] -rw------- 1 boincer umatlas   1013760 Oct 12 13:52 result.tar.gz
13:52:11 (29713): run_atlas exited; CPU time 45380.949144
13:52:11 (29713): called boinc_finish(0)

</stderr_txt>
]]>

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