Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:41:05 (22311): wrapper (7.7.26015): starting
12:41:05 (22311): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 12:41:05] Arguments: --nthreads 12
[2025-10-12 12:41:05] Threads: 12
[2025-10-12 12:41:05] Checking for CVMFS
[2025-10-12 12:41:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:41:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:41:05] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:41:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:41:05] 2.11.2.0 3103 13110 84460 151627 1 57 10889330 20275200 1 130560 0 13608675 99.993 438173 46089 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 12:41:05] CVMFS is ok
[2025-10-12 12:41:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:41:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:41:05] Further information can be found at the LHC@home message board.
[2025-10-12 12:41:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:41:05] Checking for apptainer binary...
[2025-10-12 12:41:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:41:05] Running /usr/bin/apptainer --version
[2025-10-12 12:41:05] apptainer version 1.3.2-1.el7
[2025-10-12 12:41:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:41:06] c-115-41.aglt2.org
[2025-10-12 12:41:06] apptainer works
[2025-10-12 12:41:06] Set ATHENA_PROC_NUMBER=12
[2025-10-12 12:41:06] Set ATHENA_CORE_NUMBER=12
[2025-10-12 12:41:07] Starting ATLAS job with PandaID=6839871099
[2025-10-12 12:41:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:46:34]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:46:34]  status=None
[2025-10-12 13:46:34]  status_code=0
[2025-10-12 13:46:34]  storage_token=
[2025-10-12 13:46:34]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839871099/log.46676269._077335.job.log.tgz.1
[2025-10-12 13:46:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/25/92/log.46676269._077335.job.log.tgz.1
[2025-10-12 13:46:34]  workdir=None
[2025-10-12 13:46:34] ]
[2025-10-12 13:46:34] 2025-10-12 17:45:51,257 | INFO     | transferring file log.46676269._077335.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839871099/log.46676269._077335.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 13:46:34] 2025-10-12 17:45:51,257 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839871099/log.46676269._077335.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._077335.job
[2025-10-12 13:46:34] 2025-10-12 17:45:51,265 | INFO     | time since job start (3870s) is within the limit (172800.0s)
[2025-10-12 13:46:34] 2025-10-12 17:45:51,279 | INFO     | adding to output.list: log.46676269._077335.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/25/92/log.46676269._077335.job.log.tg
[2025-10-12 13:46:34] 2025-10-12 17:45:51,279 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 13:46:34] 2025-10-12 17:45:51,280 | INFO     | summary of transferred files:
[2025-10-12 13:46:34] 2025-10-12 17:45:51,280 | INFO     |  -- lfn=log.46676269._077335.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 13:46:34] 2025-10-12 17:45:51,280 | INFO     | stage-out finished correctly
[2025-10-12 13:46:34] 2025-10-12 17:45:51,639 | WARNING  | process 32344 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 13:46:34] 2025-10-12 17:45:51,639 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839871099/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:46:34] 2025-10-12 17:45:51,723 | INFO     | number of running child processes to parent process 32344: 1
[2025-10-12 13:46:34] 2025-10-12 17:45:51,723 | INFO     | maximum number of monitored processes: 6
[2025-10-12 13:46:34] 2025-10-12 17:45:53,166 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 13:46:34] 2025-10-12 17:45:53,271 | INFO     | time since job start (3872s) is within the limit (172800.0s)
[2025-10-12 13:46:34] 2025-10-12 17:45:54,226 | INFO     | monitor loop #292: job 0:6839871099 is in state 'finished'
[2025-10-12 13:46:34] 2025-10-12 17:45:54,226 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:46:34] 2025-10-12 17:45:54,324 | INFO     | job 6839871099 has state=finished
[2025-10-12 13:46:34] 2025-10-12 17:45:54,324 | INFO     | preparing for final server update for job 6839871099 in state='finished'
[2025-10-12 13:46:34] 2025-10-12 17:45:54,331 | INFO     | this job has now completed (state=finished)
[2025-10-12 13:46:34] 2025-10-12 17:45:54,331 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 13:46:34] 2025-10-12 17:45:54,331 | INFO     | log transfer has been attempted: DONE
[2025-10-12 13:46:34] 2025-10-12 17:45:54,331 | INFO     | job 6839871099 has finished - writing final server update
[2025-10-12 13:46:34] 2025-10-12 17:45:54,331 | INFO     | total number of processed events: 400 (read)
[2025-10-12 13:46:34] 2025-10-12 17:45:54,332 | INFO     | executing command: lscpu
[2025-10-12 13:46:34] 2025-10-12 17:45:54,359 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 13:46:34] 2025-10-12 17:45:55,277 | INFO     | time since job start (3874s) is within the limit (172800.0s)
[2025-10-12 13:46:34] 2025-10-12 17:45:56,729 | INFO     | monitor loop #293: job 0:6839871099 is in state 'finished'
[2025-10-12 13:46:34] 2025-10-12 17:45:56,729 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:46:34] 2025-10-12 17:45:57,283 | INFO     | time since job start (3876s) is within the limit (172800.0s)
[2025-10-12 13:46:34] 2025-10-12 17:45:58,996 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 13:46:34] 2025-10-12 17:45:58,999 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-12 13:46:34] 2025-10-12 17:45:59,001 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839871099/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:46:34] 2025-10-12 17:45:59,001 | INFO     | extracted standard info from prmon json
[2025-10-12 13:46:34] 2025-10-12 17:45:59,002 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 13:46:34] 2025-10-12 17:45:59,002 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:46:34] 2025-10-12 17:45:59,002 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:46:34] 2025-10-12 17:45:59,002 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:46:34] 2025-10-12 17:45:59,003 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:46:34] 2025-10-12 17:45:59,004 | INFO     | sum of square deviations: 54438230.0
[2025-10-12 13:46:34] 2025-10-12 17:45:59,004 | INFO     | sum of deviations: -6328680460.0
[2025-10-12 13:46:34] 2025-10-12 17:45:59,004 | INFO     | mean x: 1760289292.5
[2025-10-12 13:46:34] 2025-10-12 17:45:59,004 | INFO     | mean y: 2833786.1428571427
[2025-10-12 13:46:34] 2025-10-12 17:45:59,004 | INFO     | -- intersect: 204644102420.18872
[2025-10-12 13:46:34] 2025-10-12 17:45:59,004 | INFO     | intersect: 204644102420.18872
[2025-10-12 13:46:34] 2025-10-12 17:45:59,004 | INFO     | chi2: 0.04468211505693722
[2025-10-12 13:46:34] 2025-10-12 17:45:59,005 | INFO     | -- intersect: 204644102420.18872
[2025-10-12 13:46:34] 2025-10-12 17:45:59,005 | INFO     | current memory leak: -116.25 B/s (using 56 data points, chi2=0.04)
[2025-10-12 13:46:34] 2025-10-12 17:45:59,005 | INFO     | could have reported an average CPU frequency of 2133 MHz (6 samples)
[2025-10-12 13:46:34] 2025-10-12 17:45:59,005 | INFO     | ..............................
[2025-10-12 13:46:34] 2025-10-12 17:45:59,005 | INFO     | . Timing measurements:
[2025-10-12 13:46:34] 2025-10-12 17:45:59,005 | INFO     | . get job = 0 s
[2025-10-12 13:46:34] 2025-10-12 17:45:59,005 | INFO     | . initial setup = 2 s
[2025-10-12 13:46:34] 2025-10-12 17:45:59,005 | INFO     | . payload setup = 6 s
[2025-10-12 13:46:34] 2025-10-12 17:45:59,006 | INFO     | . stage-in = 0 s
[2025-10-12 13:46:34] 2025-10-12 17:45:59,006 | INFO     | . payload execution = 3842 s
[2025-10-12 13:46:34] 2025-10-12 17:45:59,006 | INFO     | . stage-out = 0 s
[2025-10-12 13:46:34] 2025-10-12 17:45:59,006 | INFO     | . log creation = 0 s
[2025-10-12 13:46:34] 2025-10-12 17:45:59,006 | INFO     | ..............................
[2025-10-12 13:46:34] 2025-10-12 17:45:59,081 | INFO     | 
[2025-10-12 13:46:34] 2025-10-12 17:45:59,081 | INFO     | job summary report
[2025-10-12 13:46:34] 2025-10-12 17:45:59,082 | INFO     | --------------------------------------------------
[2025-10-12 13:46:34] 2025-10-12 17:45:59,082 | INFO     | PanDA job id: 6839871099
[2025-10-12 13:46:34] 2025-10-12 17:45:59,082 | INFO     | task id: 46676269
[2025-10-12 13:46:34] 2025-10-12 17:45:59,082 | INFO     | errors: (none)
[2025-10-12 13:46:34] 2025-10-12 17:45:59,082 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:46:34] 2025-10-12 17:45:59,082 | INFO     | pilot state: finished 
[2025-10-12 13:46:34] 2025-10-12 17:45:59,083 | INFO     | transexitcode: 0
[2025-10-12 13:46:34] 2025-10-12 17:45:59,083 | INFO     | exeerrorcode: 0
[2025-10-12 13:46:34] 2025-10-12 17:45:59,083 | INFO     | exeerrordiag: 
[2025-10-12 13:46:34] 2025-10-12 17:45:59,083 | INFO     | exitcode: 0
[2025-10-12 13:46:34] 2025-10-12 17:45:59,083 | INFO     | exitmsg: OK
[2025-10-12 13:46:34] 2025-10-12 17:45:59,083 | INFO     | cpuconsumptiontime: 41187 s
[2025-10-12 13:46:34] 2025-10-12 17:45:59,083 | INFO     | nevents: 400
[2025-10-12 13:46:34] 2025-10-12 17:45:59,084 | INFO     | neventsw: 0
[2025-10-12 13:46:34] 2025-10-12 17:45:59,084 | INFO     | pid: 32344
[2025-10-12 13:46:34] 2025-10-12 17:45:59,084 | INFO     | pgrp: 32344
[2025-10-12 13:46:34] 2025-10-12 17:45:59,084 | INFO     | corecount: 12
[2025-10-12 13:46:34] 2025-10-12 17:45:59,084 | INFO     | event service: False
[2025-10-12 13:46:34] 2025-10-12 17:45:59,085 | INFO     | sizes: {0: 2348686, 1: 2348885, 5: 2349147, 11: 2349203, 3853: 2374988, 3854: 2383986, 3856: 2384170, 3861: 2384364}
[2025-10-12 13:46:34] 2025-10-12 17:45:59,085 | INFO     | --------------------------------------------------
[2025-10-12 13:46:34] 2025-10-12 17:45:59,085 | INFO     | 
[2025-10-12 13:46:34] 2025-10-12 17:45:59,085 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 13:46:34] 2025-10-12 17:45:59,111 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:46:34] 2025-10-12 17:45:59,112 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:46:34] 2025-10-12 17:45:59,112 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:46:34] 2025-10-12 17:45:59,112 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:46:34] 2025-10-12 17:45:59,112 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:46:34] 2025-10-12 17:45:59,113 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:46:34] 2025-10-12 17:45:59,113 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:46:34] 2025-10-12 17:45:59,113 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:46:34] 2025-10-12 17:45:59,113 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:46:34] 2025-10-12 17:45:59,113 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:46:34] 2025-10-12 17:45:59,113 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:46:34] 2025-10-12 17:45:59,114 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:46:34] 2025-10-12 17:45:59,114 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:46:34] 2025-10-12 17:45:59,114 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:46:34] 2025-10-12 17:45:59,114 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:46:34] 2025-10-12 17:45:59,114 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:46:34] 2025-10-12 17:45:59,114 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:46:34] 2025-10-12 17:45:59,115 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:46:34] 2025-10-12 17:45:59,115 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:46:34] 2025-10-12 17:45:59,115 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:46:34] 2025-10-12 17:45:59,115 | INFO     | job 6839871099 has completed (purged errors)
[2025-10-12 13:46:34] 2025-10-12 17:45:59,115 | INFO     | overall cleanup function is called
[2025-10-12 13:46:34] 2025-10-12 17:46:00,124 | INFO     | --- collectZombieJob: --- 10, [32344]
[2025-10-12 13:46:34] 2025-10-12 17:46:00,124 | INFO     | zombie collector waiting for pid 32344
[2025-10-12 13:46:34] 2025-10-12 17:46:00,133 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:46:34] 2025-10-12 17:46:00,134 | INFO     | collected zombie processes
[2025-10-12 13:46:34] 2025-10-12 17:46:00,134 | INFO     | will attempt to kill all subprocesses of pid=32344
[2025-10-12 13:46:34] 2025-10-12 17:46:00,221 | INFO     | process IDs to be killed: [32344] (in reverse order)
[2025-10-12 13:46:34] 2025-10-12 17:46:00,274 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:46:34] 2025-10-12 17:46:00,274 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:46:34] 2025-10-12 17:46:00,278 | INFO     | did not find any defunct processes belonging to 32344
[2025-10-12 13:46:34] 2025-10-12 17:46:00,281 | INFO     | did not find any defunct processes belonging to 32344
[2025-10-12 13:46:34] 2025-10-12 17:46:00,281 | INFO     | ready for new job
[2025-10-12 13:46:34] 2025-10-12 17:46:00,281 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:46:34] 2025-10-12 17:46:00,282 | INFO     | ***************************************
[2025-10-12 13:46:34] 2025-10-12 17:46:00,282 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:46:34] 2025-10-12 17:46:00,282 | INFO     | ***************************************
[2025-10-12 13:46:34] 2025-10-12 17:46:00,282 | INFO     | 
[2025-10-12 13:46:34] 2025-10-12 17:46:00,283 | INFO     | architecture information:
[2025-10-12 13:46:34] 2025-10-12 17:46:00,283 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:46:34] 2025-10-12 17:46:00,300 | INFO     | cat /etc/os-release:
[2025-10-12 13:46:34] NAME="CentOS Linux"
[2025-10-12 13:46:34] VERSION="7 (Core)"
[2025-10-12 13:46:34] ID="centos"
[2025-10-12 13:46:34] ID_LIKE="rhel fedora"
[2025-10-12 13:46:34] VERSION_ID="7"
[2025-10-12 13:46:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:46:34] ANSI_COLOR="0;31"
[2025-10-12 13:46:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:46:34] HOME_URL="https://www.centos.org/"
[2025-10-12 13:46:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:46:34] 
[2025-10-12 13:46:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:46:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:46:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:46:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:46:34] 
[2025-10-12 13:46:34] 2025-10-12 17:46:00,301 | INFO     | ***************************************
[2025-10-12 13:46:34] 2025-10-12 17:46:00,803 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 13:46:34] 2025-10-12 17:46:00,823 | INFO     | sufficient remaining disk space (18589155328 B)
[2025-10-12 13:46:34] 2025-10-12 17:46:00,823 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:46:34] 2025-10-12 17:46:00,823 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:46:34] 2025-10-12 17:46:00,823 | INFO     | update_server=False
[2025-10-12 13:46:34] 2025-10-12 17:46:00,824 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:46:34] 2025-10-12 17:46:00,824 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:46:34] 2025-10-12 17:46:00,824 | INFO     | aborting loop
[2025-10-12 13:46:34] 2025-10-12 17:46:00,824 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:46:34] 2025-10-12 17:46:01,685 | INFO     | all data control threads have been joined
[2025-10-12 13:46:34] 2025-10-12 17:46:01,825 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:46:34] 2025-10-12 17:46:01,829 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:46:34] 2025-10-12 17:46:01,830 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:46:34] 2025-10-12 17:46:01,872 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:46:34] 2025-10-12 17:46:01,958 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:46:34] 2025-10-12 17:46:02,018 | INFO     | all payload control threads have been joined
[2025-10-12 13:46:34] 2025-10-12 17:46:02,095 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:46:34] 2025-10-12 17:46:02,228 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:46:34] 2025-10-12 17:46:02,292 | INFO     | all job control threads have been joined
[2025-10-12 13:46:34] 2025-10-12 17:46:02,690 | INFO     | [data] control thread has finished
[2025-10-12 13:46:34] 2025-10-12 17:46:02,801 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:46:34] 2025-10-12 17:46:03,024 | INFO     | [payload] control thread has finished
[2025-10-12 13:46:34] 2025-10-12 17:46:03,135 | INFO     | [job] validate thread has finished
[2025-10-12 13:46:34] 2025-10-12 17:46:03,135 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:46:34] 2025-10-12 17:46:03,230 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:46:34] 2025-10-12 17:46:03,297 | INFO     | [job] control thread has finished
[2025-10-12 13:46:34] 2025-10-12 17:46:03,747 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:46:34] 2025-10-12 17:46:03,877 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:46:34] 2025-10-12 17:46:07,753 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:46:34] 2025-10-12 17:46:11,682 | INFO     | job.realtimelogging is not enabled
[2025-10-12 13:46:34] 2025-10-12 17:46:12,687 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:46:34] 2025-10-12 17:46:27,419 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:46:34] 2025-10-12 17:46:29,206 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139733122017088)>', '<ExcThread(monitor, started 139731786524416)>']
[2025-10-12 13:46:34] 2025-10-12 17:46:30,481 | INFO     | PID=25994 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 13:46:34] 2025-10-12 17:46:30,482 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:46:34] 2025-10-12 17:46:30,482 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:46:34] 2025-10-12 17:46:30,482 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:46:34] 2025-10-12 17:46:30,482 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:46:34] 2025-10-12 17:46:30,482 | INFO     | [monitor] control thread has ended
[2025-10-12 13:46:34] 2025-10-12 17:46:34,223 | INFO     | all workflow threads have been joined
[2025-10-12 13:46:34] 2025-10-12 17:46:34,223 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:46:34] 2025-10-12 17:46:34,223 | INFO     | traces error code: 0
[2025-10-12 13:46:34] 2025-10-12 17:46:34,224 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:46:34] 2025-10-12 17:46:34,326 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:46:34] 2025-10-12 17:46:34,330 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:46:34] 2025-10-12 17:46:34,334 [wrapper] pilotpid: 25994
[2025-10-12 13:46:34] 2025-10-12 17:46:34,338 [wrapper] Pilot exit status: 0
[2025-10-12 13:46:34] 2025-10-12 17:46:34,354 [wrapper] pandaids: 6839871099
[2025-10-12 13:46:34] 2025-10-12 17:46:34,395 [wrapper] cleanup supervisor_pilot   687 25995
[2025-10-12 13:46:34] 2025-10-12 17:46:34,399 [wrapper] Test setup, not cleaning
[2025-10-12 13:46:34] 2025-10-12 17:46:34,403 [wrapper] apfmon messages muted
[2025-10-12 13:46:34] 2025-10-12 17:46:34,406 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:46:34] 2025-10-12 17:46:34,410 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:46:34]  *** Error codes and diagnostics ***
[2025-10-12 13:46:34]     "exeErrorCode": 0,
[2025-10-12 13:46:34]     "exeErrorDiag": "",
[2025-10-12 13:46:34]     "pilotErrorCode": 0,
[2025-10-12 13:46:34]     "pilotErrorDiag": "",
[2025-10-12 13:46:34]  *** Listing of results directory ***
[2025-10-12 13:46:34] total 408476
[2025-10-12 13:46:34] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 07:23 pilot3.tar.gz
[2025-10-12 13:46:34] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 07:45 queuedata.json
[2025-10-12 13:46:34] -rwx------ 1 boincer umatlas     36292 Oct 12 07:46 runpilot2-wrapper.sh
[2025-10-12 13:46:34] -rw-r--r-- 1 boincer umatlas       100 Oct 12 12:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:46:34] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 12:41 run_atlas
[2025-10-12 13:46:34] -rw-r--r-- 1 boincer umatlas       105 Oct 12 12:41 job.xml
[2025-10-12 13:46:34] drwxrwx--x 2 boincer umatlas      4096 Oct 12 12:41 shared
[2025-10-12 13:46:34] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 12:41 input.tar.gz
[2025-10-12 13:46:34] -rw-r--r-- 2 boincer umatlas 221468579 Oct 12 12:41 EVNT.46676267._003705.pool.root.1
[2025-10-12 13:46:34] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:41 start_atlas.sh
[2025-10-12 13:46:34] -rw-r--r-- 1 boincer umatlas         0 Oct 12 12:41 boinc_lockfile
[2025-10-12 13:46:34] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 12:41 pandaJob.out
[2025-10-12 13:46:34] -rw------- 1 boincer umatlas    975528 Oct 12 12:41 agis_schedconf.cvmfs.json
[2025-10-12 13:46:34] -rw------- 1 boincer umatlas   1560580 Oct 12 12:41 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:46:34] drwx------ 5 boincer umatlas      4096 Oct 12 12:41 pilot3
[2025-10-12 13:46:34] -rw-r--r-- 1 boincer umatlas      5954 Oct 12 13:45 init_data.xml
[2025-10-12 13:46:34] -rw-r--r-- 1 boincer umatlas       529 Oct 12 13:45 boinc_task_state.xml
[2025-10-12 13:46:34] -rw------- 1 boincer umatlas 190980264 Oct 12 13:45 HITS.46676269._077335.pool.root.1
[2025-10-12 13:46:34] -rw------- 1 boincer umatlas      1048 Oct 12 13:45 memory_monitor_summary.json
[2025-10-12 13:46:34] -rw------- 1 boincer umatlas    385998 Oct 12 13:45 log.46676269._077335.job.log.tgz.1
[2025-10-12 13:46:34] -rw------- 1 boincer umatlas      7857 Oct 12 13:45 heartbeat.json
[2025-10-12 13:46:34] -rw-r--r-- 1 boincer umatlas        27 Oct 12 13:46 wrapper_checkpoint.txt
[2025-10-12 13:46:34] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 13:46 boinc_mmap_file
[2025-10-12 13:46:34] -rw------- 1 boincer umatlas        95 Oct 12 13:46 pilot_heartbeat.json
[2025-10-12 13:46:34] -rw------- 1 boincer umatlas      4818 Oct 12 13:46 pilotlog.txt
[2025-10-12 13:46:34] -rw------- 1 boincer umatlas    573490 Oct 12 13:46 log.46676269._077335.job.log.1
[2025-10-12 13:46:34] -rw------- 1 boincer umatlas       357 Oct 12 13:46 output.list
[2025-10-12 13:46:34] -rw-r--r-- 1 boincer umatlas       620 Oct 12 13:46 runtime_log
[2025-10-12 13:46:34] -rw------- 1 boincer umatlas    983040 Oct 12 13:46 result.tar.gz
[2025-10-12 13:46:34] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 13:46 runtime_log.err
[2025-10-12 13:46:34] -rw------- 1 boincer umatlas       659 Oct 12 13:46 HatMDmwh9R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmGmTMDmNC8Rrn.diag
[2025-10-12 13:46:34] -rw-r--r-- 1 boincer umatlas     22006 Oct 12 13:46 stderr.txt
[2025-10-12 13:46:34] HITS file was successfully produced:
[2025-10-12 13:46:34] -rw------- 1 boincer umatlas 190980264 Oct 12 13:45 shared/HITS.pool.root.1
[2025-10-12 13:46:34]  *** Contents of shared directory: ***
[2025-10-12 13:46:34] total 404328
[2025-10-12 13:46:34] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 12:41 input.tar.gz
[2025-10-12 13:46:34] -rw-r--r-- 2 boincer umatlas 221468579 Oct 12 12:41 ATLAS.root_0
[2025-10-12 13:46:34] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:41 start_atlas.sh
[2025-10-12 13:46:34] -rw------- 1 boincer umatlas 190980264 Oct 12 13:45 HITS.pool.root.1
[2025-10-12 13:46:34] -rw------- 1 boincer umatlas    983040 Oct 12 13:46 result.tar.gz
13:46:36 (22311): run_atlas exited; CPU time 41178.328461
13:46:36 (22311): called boinc_finish(0)

</stderr_txt>
]]>

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