Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:44:22 (9613): wrapper (7.7.26015): starting
12:44:22 (9613): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 12:44:22] Arguments: --nthreads 8
[2025-10-12 12:44:22] Threads: 8
[2025-10-12 12:44:22] Checking for CVMFS
[2025-10-12 12:44:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:44:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:44:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:44:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:44:23] 2.11.2.0 8318 53206 111116 151627 2 188 10049428 18432001 1569 130560 0 48311006 99.973 2525580 38934 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 12:44:23] CVMFS is ok
[2025-10-12 12:44:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:44:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:44:23] Further information can be found at the LHC@home message board.
[2025-10-12 12:44:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:44:23] Checking for apptainer binary...
[2025-10-12 12:44:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:44:23] Running /usr/bin/apptainer --version
[2025-10-12 12:44:23] apptainer version 1.3.2-1.el7
[2025-10-12 12:44:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:44:23] c-206-28.aglt2.org
[2025-10-12 12:44:23] apptainer works
[2025-10-12 12:44:23] Set ATHENA_PROC_NUMBER=8
[2025-10-12 12:44:23] Set ATHENA_CORE_NUMBER=8
[2025-10-12 12:44:23] Starting ATLAS job with PandaID=6839990779
[2025-10-12 12:44:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 15:52:59]  *** The last 200 lines of the pilot log: ***
[2025-10-12 15:52:59] 2025-10-12 19:52:20,833 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 15:52:59] 2025-10-12 19:52:20,833 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 15:52:59] 2025-10-12 19:52:20,833 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 15:52:59] 2025-10-12 19:52:20,836 | INFO     | fitting pss+swap vs Time
[2025-10-12 15:52:59] 2025-10-12 19:52:20,836 | INFO     | sum of square deviations: 1963274020.0
[2025-10-12 15:52:59] 2025-10-12 19:52:20,837 | INFO     | sum of deviations: 8575831216.999996
[2025-10-12 15:52:59] 2025-10-12 19:52:20,837 | INFO     | mean x: 1760293113.0
[2025-10-12 15:52:59] 2025-10-12 19:52:20,837 | INFO     | mean y: 2459910.1135135135
[2025-10-12 15:52:59] 2025-10-12 19:52:20,838 | INFO     | -- intersect: -7686724827.091689
[2025-10-12 15:52:59] 2025-10-12 19:52:20,838 | INFO     | intersect: -7686724827.091689
[2025-10-12 15:52:59] 2025-10-12 19:52:20,838 | INFO     | chi2: 2.117921691581187
[2025-10-12 15:52:59] 2025-10-12 19:52:20,838 | INFO     | sum of square deviations: 1808350185.0
[2025-10-12 15:52:59] 2025-10-12 19:52:20,839 | INFO     | sum of deviations: 20654751554.500008
[2025-10-12 15:52:59] 2025-10-12 19:52:20,839 | INFO     | mean x: 1760292960.5
[2025-10-12 15:52:59] 2025-10-12 19:52:20,839 | INFO     | mean y: 2471529.172222222
[2025-10-12 15:52:59] 2025-10-12 19:52:20,839 | INFO     | -- intersect: -20103376366.79976
[2025-10-12 15:52:59] 2025-10-12 19:52:20,840 | INFO     | intersect: -20103376366.79976
[2025-10-12 15:52:59] 2025-10-12 19:52:20,840 | INFO     | chi2: 1.2918793746821537
[2025-10-12 15:52:59] 2025-10-12 19:52:20,840 | INFO     | current chi2=1.2918793746821537 (change=39.00249570994907 %)
[2025-10-12 15:52:59] 2025-10-12 19:52:20,840 | INFO     | sum of square deviations: 1661798600.0
[2025-10-12 15:52:59] 2025-10-12 19:52:20,841 | INFO     | sum of deviations: 19972189706.0
[2025-10-12 15:52:59] 2025-10-12 19:52:20,841 | INFO     | mean x: 1760292808.0
[2025-10-12 15:52:59] 2025-10-12 19:52:20,841 | INFO     | mean y: 2470819.36
[2025-10-12 15:52:59] 2025-10-12 19:52:20,841 | INFO     | -- intersect: -21153463419.291683
[2025-10-12 15:52:59] 2025-10-12 19:52:20,841 | INFO     | intersect: -21153463419.291683
[2025-10-12 15:52:59] 2025-10-12 19:52:20,842 | INFO     | chi2: 1.2927996575032412
[2025-10-12 15:52:59] 2025-10-12 19:52:20,842 | INFO     | current chi2=1.2927996575032412 (change=-0.0712359713393436 %)
[2025-10-12 15:52:59] 2025-10-12 19:52:20,842 | INFO     | right removable region: 174
[2025-10-12 15:52:59] 2025-10-12 19:52:20,842 | INFO     | sum of square deviations: 1808350185.0
[2025-10-12 15:52:59] 2025-10-12 19:52:20,843 | INFO     | sum of deviations: -17212329374.0
[2025-10-12 15:52:59] 2025-10-12 19:52:20,843 | INFO     | mean x: 1760293265.5
[2025-10-12 15:52:59] 2025-10-12 19:52:20,843 | INFO     | mean y: 2484996.466666667
[2025-10-12 15:52:59] 2025-10-12 19:52:20,843 | INFO     | -- intersect: 16757396590.439838
[2025-10-12 15:52:59] 2025-10-12 19:52:20,843 | INFO     | intersect: 16757396590.439838
[2025-10-12 15:52:59] 2025-10-12 19:52:20,844 | INFO     | chi2: 0.8619263559359588
[2025-10-12 15:52:59] 2025-10-12 19:52:20,844 | INFO     | current chi2=0.8619263559359588 (change=59.303199954835605 %)
[2025-10-12 15:52:59] 2025-10-12 19:52:20,844 | INFO     | sum of square deviations: 1661798600.0
[2025-10-12 15:52:59] 2025-10-12 19:52:20,845 | INFO     | sum of deviations: -16895227218.0
[2025-10-12 15:52:59] 2025-10-12 19:52:20,845 | INFO     | mean x: 1760293418.0
[2025-10-12 15:52:59] 2025-10-12 19:52:20,845 | INFO     | mean y: 2484658.3314285716
[2025-10-12 15:52:59] 2025-10-12 19:52:20,845 | INFO     | -- intersect: 17899092145.8211
[2025-10-12 15:52:59] 2025-10-12 19:52:20,845 | INFO     | intersect: 17899092145.8211
[2025-10-12 15:52:59] 2025-10-12 19:52:20,846 | INFO     | chi2: 0.8618652697332643
[2025-10-12 15:52:59] 2025-10-12 19:52:20,846 | INFO     | current chi2=0.8618652697332643 (change=0.007087171922963511 %)
[2025-10-12 15:52:59] 2025-10-12 19:52:20,846 | INFO     | left removable region: 20
[2025-10-12 15:52:59] 2025-10-12 19:52:20,846 | INFO     | sum of square deviations: 1132458442.5
[2025-10-12 15:52:59] 2025-10-12 19:52:20,847 | INFO     | sum of deviations: -2199206495.500001
[2025-10-12 15:52:59] 2025-10-12 19:52:20,847 | INFO     | mean x: 1760293387.5
[2025-10-12 15:52:59] 2025-10-12 19:52:20,847 | INFO     | mean y: 2494419.6558441557
[2025-10-12 15:52:59] 2025-10-12 19:52:20,847 | INFO     | -- intersect: 3420940966.1177025
[2025-10-12 15:52:59] 2025-10-12 19:52:20,847 | INFO     | intersect: 3420940966.1177025
[2025-10-12 15:52:59] 2025-10-12 19:52:20,847 | INFO     | chi2: 0.010605233600891273
[2025-10-12 15:52:59] 2025-10-12 19:52:20,847 | INFO     | -- intersect: 3420940966.1177025
[2025-10-12 15:52:59] 2025-10-12 19:52:20,848 | INFO     | current memory leak: -1.94 B/s (using 154 data points, chi2=0.01)
[2025-10-12 15:52:59] 2025-10-12 19:52:20,848 | INFO     | could have reported an average CPU frequency of 2222 MHz (10 samples)
[2025-10-12 15:52:59] 2025-10-12 19:52:20,848 | INFO     | ..............................
[2025-10-12 15:52:59] 2025-10-12 19:52:20,848 | INFO     | . Timing measurements:
[2025-10-12 15:52:59] 2025-10-12 19:52:20,848 | INFO     | . get job = 0 s
[2025-10-12 15:52:59] 2025-10-12 19:52:20,848 | INFO     | . initial setup = 2 s
[2025-10-12 15:52:59] 2025-10-12 19:52:20,848 | INFO     | . payload setup = 5 s
[2025-10-12 15:52:59] 2025-10-12 19:52:20,849 | INFO     | . stage-in = 0 s
[2025-10-12 15:52:59] 2025-10-12 19:52:20,849 | INFO     | . payload execution = 11231 s
[2025-10-12 15:52:59] 2025-10-12 19:52:20,849 | INFO     | . stage-out = 1 s
[2025-10-12 15:52:59] 2025-10-12 19:52:20,849 | INFO     | . log creation = 0 s
[2025-10-12 15:52:59] 2025-10-12 19:52:20,849 | INFO     | ..............................
[2025-10-12 15:52:59] 2025-10-12 19:52:20,925 | INFO     | 
[2025-10-12 15:52:59] 2025-10-12 19:52:20,925 | INFO     | job summary report
[2025-10-12 15:52:59] 2025-10-12 19:52:20,925 | INFO     | --------------------------------------------------
[2025-10-12 15:52:59] 2025-10-12 19:52:20,925 | INFO     | PanDA job id: 6839990779
[2025-10-12 15:52:59] 2025-10-12 19:52:20,925 | INFO     | task id: 46676269
[2025-10-12 15:52:59] 2025-10-12 19:52:20,925 | INFO     | errors: (none)
[2025-10-12 15:52:59] 2025-10-12 19:52:20,925 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 15:52:59] 2025-10-12 19:52:20,926 | INFO     | pilot state: finished 
[2025-10-12 15:52:59] 2025-10-12 19:52:20,926 | INFO     | transexitcode: 0
[2025-10-12 15:52:59] 2025-10-12 19:52:20,926 | INFO     | exeerrorcode: 0
[2025-10-12 15:52:59] 2025-10-12 19:52:20,926 | INFO     | exeerrordiag: 
[2025-10-12 15:52:59] 2025-10-12 19:52:20,926 | INFO     | exitcode: 0
[2025-10-12 15:52:59] 2025-10-12 19:52:20,926 | INFO     | exitmsg: OK
[2025-10-12 15:52:59] 2025-10-12 19:52:20,926 | INFO     | cpuconsumptiontime: 85346 s
[2025-10-12 15:52:59] 2025-10-12 19:52:20,926 | INFO     | nevents: 400
[2025-10-12 15:52:59] 2025-10-12 19:52:20,926 | INFO     | neventsw: 0
[2025-10-12 15:52:59] 2025-10-12 19:52:20,926 | INFO     | pid: 19737
[2025-10-12 15:52:59] 2025-10-12 19:52:20,926 | INFO     | pgrp: 19737
[2025-10-12 15:52:59] 2025-10-12 19:52:20,927 | INFO     | corecount: 8
[2025-10-12 15:52:59] 2025-10-12 19:52:20,927 | INFO     | event service: False
[2025-10-12 15:52:59] 2025-10-12 19:52:20,927 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 11241: 2378477, 11243: 2387475, 11245: 2387531, 11250: 2387853}
[2025-10-12 15:52:59] 2025-10-12 19:52:20,927 | INFO     | --------------------------------------------------
[2025-10-12 15:52:59] 2025-10-12 19:52:20,927 | INFO     | 
[2025-10-12 15:52:59] 2025-10-12 19:52:20,927 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 15:52:59] 2025-10-12 19:52:20,945 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 15:52:59] 2025-10-12 19:52:20,946 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 15:52:59] 2025-10-12 19:52:20,946 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 15:52:59] 2025-10-12 19:52:20,946 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 15:52:59] 2025-10-12 19:52:20,946 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 15:52:59] 2025-10-12 19:52:20,946 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 15:52:59] 2025-10-12 19:52:20,946 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 15:52:59] 2025-10-12 19:52:20,946 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 15:52:59] 2025-10-12 19:52:20,946 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 15:52:59] 2025-10-12 19:52:20,947 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 15:52:59] 2025-10-12 19:52:20,947 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 15:52:59] 2025-10-12 19:52:20,947 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 15:52:59] 2025-10-12 19:52:20,947 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 15:52:59] 2025-10-12 19:52:20,947 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 15:52:59] 2025-10-12 19:52:20,947 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 15:52:59] 2025-10-12 19:52:20,947 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 15:52:59] 2025-10-12 19:52:20,947 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 15:52:59] 2025-10-12 19:52:20,947 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 15:52:59] 2025-10-12 19:52:20,948 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 15:52:59] 2025-10-12 19:52:20,948 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 15:52:59] 2025-10-12 19:52:20,948 | INFO     | job 6839990779 has completed (purged errors)
[2025-10-12 15:52:59] 2025-10-12 19:52:20,948 | INFO     | overall cleanup function is called
[2025-10-12 15:52:59] 2025-10-12 19:52:21,955 | INFO     | --- collectZombieJob: --- 10, [19737]
[2025-10-12 15:52:59] 2025-10-12 19:52:21,955 | INFO     | zombie collector waiting for pid 19737
[2025-10-12 15:52:59] 2025-10-12 19:52:21,956 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 15:52:59] 2025-10-12 19:52:21,956 | INFO     | collected zombie processes
[2025-10-12 15:52:59] 2025-10-12 19:52:21,956 | INFO     | will attempt to kill all subprocesses of pid=19737
[2025-10-12 15:52:59] 2025-10-12 19:52:22,061 | INFO     | process IDs to be killed: [19737] (in reverse order)
[2025-10-12 15:52:59] 2025-10-12 19:52:22,105 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 15:52:59] 2025-10-12 19:52:22,105 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 15:52:59] 2025-10-12 19:52:22,108 | INFO     | did not find any defunct processes belonging to 19737
[2025-10-12 15:52:59] 2025-10-12 19:52:22,110 | INFO     | did not find any defunct processes belonging to 19737
[2025-10-12 15:52:59] 2025-10-12 19:52:22,110 | INFO     | ready for new job
[2025-10-12 15:52:59] 2025-10-12 19:52:22,110 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 15:52:59] 2025-10-12 19:52:22,112 | INFO     | ***************************************
[2025-10-12 15:52:59] 2025-10-12 19:52:22,112 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 15:52:59] 2025-10-12 19:52:22,112 | INFO     | ***************************************
[2025-10-12 15:52:59] 2025-10-12 19:52:22,112 | INFO     | 
[2025-10-12 15:52:59] 2025-10-12 19:52:22,113 | INFO     | architecture information:
[2025-10-12 15:52:59] 2025-10-12 19:52:22,113 | INFO     | executing command: cat /etc/os-release
[2025-10-12 15:52:59] 2025-10-12 19:52:22,125 | INFO     | cat /etc/os-release:
[2025-10-12 15:52:59] NAME="CentOS Linux"
[2025-10-12 15:52:59] VERSION="7 (Core)"
[2025-10-12 15:52:59] ID="centos"
[2025-10-12 15:52:59] ID_LIKE="rhel fedora"
[2025-10-12 15:52:59] VERSION_ID="7"
[2025-10-12 15:52:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 15:52:59] ANSI_COLOR="0;31"
[2025-10-12 15:52:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 15:52:59] HOME_URL="https://www.centos.org/"
[2025-10-12 15:52:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 15:52:59] 
[2025-10-12 15:52:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 15:52:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 15:52:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 15:52:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 15:52:59] 
[2025-10-12 15:52:59] 2025-10-12 19:52:22,125 | INFO     | ***************************************
[2025-10-12 15:52:59] 2025-10-12 19:52:22,628 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 15:52:59] 2025-10-12 19:52:22,650 | INFO     | sufficient remaining disk space (27645706240 B)
[2025-10-12 15:52:59] 2025-10-12 19:52:22,651 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 15:52:59] 2025-10-12 19:52:22,651 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 15:52:59] 2025-10-12 19:52:22,651 | INFO     | update_server=False
[2025-10-12 15:52:59] 2025-10-12 19:52:22,651 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 15:52:59] 2025-10-12 19:52:22,651 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 15:52:59] 2025-10-12 19:52:22,652 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 15:52:59] 2025-10-12 19:52:22,652 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:52:59] 2025-10-12 19:52:23,092 | INFO     | all job control threads have been joined
[2025-10-12 15:52:59] 2025-10-12 19:52:23,159 | INFO     | all data control threads have been joined
[2025-10-12 15:52:59] 2025-10-12 19:52:23,642 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:52:59] 2025-10-12 19:52:23,642 | INFO     | aborting loop
[2025-10-12 15:52:59] 2025-10-12 19:52:23,657 | INFO     | [job] retrieve thread has finished
[2025-10-12 15:52:59] 2025-10-12 19:52:23,657 | INFO     | [job] queue monitor thread has finished
[2025-10-12 15:52:59] 2025-10-12 19:52:23,695 | INFO     | [data] copytool_in thread has finished
[2025-10-12 15:52:59] 2025-10-12 19:52:23,705 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 15:52:59] 2025-10-12 19:52:23,993 | INFO     | [payload] validate_post thread has finished
[2025-10-12 15:52:59] 2025-10-12 19:52:24,040 | INFO     | all payload control threads have been joined
[2025-10-12 15:52:59] 2025-10-12 19:52:24,091 | INFO     | [payload] failed_post thread has finished
[2025-10-12 15:52:59] 2025-10-12 19:52:24,097 | INFO     | [job] control thread has finished
[2025-10-12 15:52:59] 2025-10-12 19:52:24,165 | INFO     | [data] control thread has finished
[2025-10-12 15:52:59] 2025-10-12 19:52:24,648 | INFO     | [job] job monitor thread has finished
[2025-10-12 15:52:59] 2025-10-12 19:52:24,657 | INFO     | [data] copytool_out thread has finished
[2025-10-12 15:52:59] 2025-10-12 19:52:24,711 | INFO     | [job] validate thread has finished
[2025-10-12 15:52:59] 2025-10-12 19:52:24,715 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 15:52:59] 2025-10-12 19:52:24,939 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 15:52:59] 2025-10-12 19:52:25,040 | INFO     | [payload] control thread has finished
[2025-10-12 15:52:59] 2025-10-12 19:52:25,045 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 15:52:59] 2025-10-12 19:52:26,657 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 15:52:59] 2025-10-12 19:52:53,006 | INFO     | PID=13340 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 15:52:59] 2025-10-12 19:52:53,007 | INFO     | .. there are 3 such processes running
[2025-10-12 15:52:59] 2025-10-12 19:52:53,007 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 15:52:59] 2025-10-12 19:52:53,007 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 15:52:59] 2025-10-12 19:52:53,008 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 15:52:59] 2025-10-12 19:52:53,508 | INFO     | [monitor] cgroup control has ended
[2025-10-12 15:52:59] 2025-10-12 19:52:54,235 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140066685732672)>', '<ExcThread(monitor, started 140065653122816)>']
[2025-10-12 15:52:59] 2025-10-12 19:52:55,018 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 15:52:59] 2025-10-12 19:52:55,018 | INFO     | [monitor] control thread has ended
[2025-10-12 15:52:59] 2025-10-12 19:52:59,260 | INFO     | all workflow threads have been joined
[2025-10-12 15:52:59] 2025-10-12 19:52:59,261 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 15:52:59] 2025-10-12 19:52:59,261 | INFO     | traces error code: 0
[2025-10-12 15:52:59] 2025-10-12 19:52:59,261 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 15:52:59] 2025-10-12 19:52:59,346 [wrapper] ==== pilot stdout END ====
[2025-10-12 15:52:59] 2025-10-12 19:52:59,348 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 15:52:59] 2025-10-12 19:52:59,351 [wrapper] pilotpid: 13340
[2025-10-12 15:52:59] 2025-10-12 19:52:59,353 [wrapper] Pilot exit status: 0
[2025-10-12 15:52:59] 2025-10-12 19:52:59,364 [wrapper] pandaids: 6839990779
[2025-10-12 15:52:59] 2025-10-12 19:52:59,397 [wrapper] cleanup supervisor_pilot 31827 13341
[2025-10-12 15:52:59] 2025-10-12 19:52:59,400 [wrapper] Test setup, not cleaning
[2025-10-12 15:52:59] 2025-10-12 19:52:59,402 [wrapper] apfmon messages muted
[2025-10-12 15:52:59] 2025-10-12 19:52:59,405 [wrapper] ==== wrapper stdout END ====
[2025-10-12 15:52:59] 2025-10-12 19:52:59,407 [wrapper] ==== wrapper stderr END ====
[2025-10-12 15:52:59]  *** Error codes and diagnostics ***
[2025-10-12 15:52:59]     "exeErrorCode": 0,
[2025-10-12 15:52:59]     "exeErrorDiag": "",
[2025-10-12 15:52:59]     "pilotErrorCode": 0,
[2025-10-12 15:52:59]     "pilotErrorDiag": "",
[2025-10-12 15:52:59]  *** Listing of results directory ***
[2025-10-12 15:52:59] total 417240
[2025-10-12 15:52:59] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 09:05 pilot3.tar.gz
[2025-10-12 15:52:59] -rwx------ 1 boincer umatlas     36292 Oct 12 09:11 runpilot2-wrapper.sh
[2025-10-12 15:52:59] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 09:11 queuedata.json
[2025-10-12 15:52:59] -rw-r--r-- 1 boincer umatlas       100 Oct 12 12:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 15:52:59] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 12:44 run_atlas
[2025-10-12 15:52:59] -rw-r--r-- 1 boincer umatlas       105 Oct 12 12:44 job.xml
[2025-10-12 15:52:59] -rw-r--r-- 2 boincer umatlas 222206756 Oct 12 12:44 EVNT.46676267._003856.pool.root.1
[2025-10-12 15:52:59] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:44 start_atlas.sh
[2025-10-12 15:52:59] drwxrwx--x 2 boincer umatlas      4096 Oct 12 12:44 shared
[2025-10-12 15:52:59] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 12:44 input.tar.gz
[2025-10-12 15:52:59] -rw-r--r-- 1 boincer umatlas         0 Oct 12 12:44 boinc_lockfile
[2025-10-12 15:52:59] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 12:44 pandaJob.out
[2025-10-12 15:52:59] -rw------- 1 boincer umatlas    975528 Oct 12 12:44 agis_schedconf.cvmfs.json
[2025-10-12 15:52:59] drwx------ 5 boincer umatlas      4096 Oct 12 12:44 pilot3
[2025-10-12 15:52:59] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 15:47 init_data.xml
[2025-10-12 15:52:59] -rw------- 1 boincer umatlas 197144500 Oct 12 15:51 HITS.46676269._079215.pool.root.1
[2025-10-12 15:52:59] -rw-r--r-- 1 boincer umatlas       530 Oct 12 15:52 boinc_task_state.xml
[2025-10-12 15:52:59] -rw------- 1 boincer umatlas      1052 Oct 12 15:52 memory_monitor_summary.json
[2025-10-12 15:52:59] -rw------- 1 boincer umatlas   1560580 Oct 12 15:52 agis_ddmendpoints.agis.ALL.json
[2025-10-12 15:52:59] -rw------- 1 boincer umatlas    418078 Oct 12 15:52 log.46676269._079215.job.log.tgz.1
[2025-10-12 15:52:59] -rw------- 1 boincer umatlas      7848 Oct 12 15:52 heartbeat.json
[2025-10-12 15:52:59] -rw------- 1 boincer umatlas        95 Oct 12 15:52 pilot_heartbeat.json
[2025-10-12 15:52:59] -rw-r--r-- 1 boincer umatlas        28 Oct 12 15:52 wrapper_checkpoint.txt
[2025-10-12 15:52:59] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 15:52 boinc_mmap_file
[2025-10-12 15:52:59] -rw------- 1 boincer umatlas      4821 Oct 12 15:52 pilotlog.txt
[2025-10-12 15:52:59] -rw------- 1 boincer umatlas   1578443 Oct 12 15:52 log.46676269._079215.job.log.1
[2025-10-12 15:52:59] -rw------- 1 boincer umatlas       357 Oct 12 15:52 output.list
[2025-10-12 15:52:59] -rw-r--r-- 1 boincer umatlas       620 Oct 12 15:52 runtime_log
[2025-10-12 15:52:59] -rw------- 1 boincer umatlas   2017280 Oct 12 15:52 result.tar.gz
[2025-10-12 15:52:59] -rw-r--r-- 1 boincer umatlas      8704 Oct 12 15:52 runtime_log.err
[2025-10-12 15:52:59] -rw------- 1 boincer umatlas       661 Oct 12 15:52 Go6KDmK2AS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPyjNDmQjrQ4n.diag
[2025-10-12 15:52:59] -rw-r--r-- 1 boincer umatlas     20856 Oct 12 15:52 stderr.txt
[2025-10-12 15:52:59] HITS file was successfully produced:
[2025-10-12 15:52:59] -rw------- 1 boincer umatlas 197144500 Oct 12 15:51 shared/HITS.pool.root.1
[2025-10-12 15:52:59]  *** Contents of shared directory: ***
[2025-10-12 15:52:59] total 412080
[2025-10-12 15:52:59] -rw-r--r-- 2 boincer umatlas 222206756 Oct 12 12:44 ATLAS.root_0
[2025-10-12 15:52:59] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:44 start_atlas.sh
[2025-10-12 15:52:59] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 12:44 input.tar.gz
[2025-10-12 15:52:59] -rw------- 1 boincer umatlas 197144500 Oct 12 15:51 HITS.pool.root.1
[2025-10-12 15:52:59] -rw------- 1 boincer umatlas   2017280 Oct 12 15:52 result.tar.gz
15:53:00 (9613): run_atlas exited; CPU time 85451.943798
15:53:00 (9613): called boinc_finish(0)

</stderr_txt>
]]>

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