Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:33:11 (18974): wrapper (7.7.26015): starting
12:33:11 (18974): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 12:33:11] Arguments: --nthreads 12
[2025-10-12 12:33:11] Threads: 12
[2025-10-12 12:33:11] Checking for CVMFS
[2025-10-12 12:33:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:33:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:33:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:33:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:33:11] 2.11.2.0 2979 223127 105320 151627 3 56 15654697 20275200 1 130560 2 108841508 99.984 13050439 12013 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 12:33:11] CVMFS is ok
[2025-10-12 12:33:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:33:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:33:11] Further information can be found at the LHC@home message board.
[2025-10-12 12:33:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:33:11] Checking for apptainer binary...
[2025-10-12 12:33:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:33:11] Running /usr/bin/apptainer --version
[2025-10-12 12:33:11] apptainer version 1.3.2-1.el7
[2025-10-12 12:33:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:33:13] c-205-7.aglt2.org
[2025-10-12 12:33:13] apptainer works
[2025-10-12 12:33:13] Set ATHENA_PROC_NUMBER=12
[2025-10-12 12:33:13] Set ATHENA_CORE_NUMBER=12
[2025-10-12 12:33:13] Starting ATLAS job with PandaID=6839866221
[2025-10-12 12:33:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:47:40]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:47:40]  status=None
[2025-10-12 13:47:40]  status_code=0
[2025-10-12 13:47:40]  storage_token=
[2025-10-12 13:47:40]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839866221/log.46676269._075939.job.log.tgz.1
[2025-10-12 13:47:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/de/d6/log.46676269._075939.job.log.tgz.1
[2025-10-12 13:47:40]  workdir=None
[2025-10-12 13:47:40] ]
[2025-10-12 13:47:40] 2025-10-12 17:46:56,450 | INFO     | transferring file log.46676269._075939.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839866221/log.46676269._075939.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 13:47:40] 2025-10-12 17:46:56,451 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839866221/log.46676269._075939.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._075939.job
[2025-10-12 13:47:40] 2025-10-12 17:46:56,473 | INFO     | adding to output.list: log.46676269._075939.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/de/d6/log.46676269._075939.job.log.tg
[2025-10-12 13:47:40] 2025-10-12 17:46:56,474 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 13:47:40] 2025-10-12 17:46:56,474 | INFO     | summary of transferred files:
[2025-10-12 13:47:40] 2025-10-12 17:46:56,475 | INFO     |  -- lfn=log.46676269._075939.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 13:47:40] 2025-10-12 17:46:56,475 | INFO     | stage-out finished correctly
[2025-10-12 13:47:40] 2025-10-12 17:46:56,559 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 13:47:40] 2025-10-12 17:46:56,965 | INFO     | time since job start (4408s) is within the limit (172800.0s)
[2025-10-12 13:47:40] 2025-10-12 17:46:57,808 | INFO     | monitor loop #329: job 0:6839866221 is in state 'finished'
[2025-10-12 13:47:40] 2025-10-12 17:46:57,808 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:47:40] 2025-10-12 17:46:58,494 | INFO     | job 6839866221 has state=finished
[2025-10-12 13:47:40] 2025-10-12 17:46:58,494 | INFO     | preparing for final server update for job 6839866221 in state='finished'
[2025-10-12 13:47:40] 2025-10-12 17:46:58,495 | INFO     | this job has now completed (state=finished)
[2025-10-12 13:47:40] 2025-10-12 17:46:58,495 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 13:47:40] 2025-10-12 17:46:58,495 | INFO     | log transfer has been attempted: DONE
[2025-10-12 13:47:40] 2025-10-12 17:46:58,495 | INFO     | job 6839866221 has finished - writing final server update
[2025-10-12 13:47:40] 2025-10-12 17:46:58,496 | INFO     | total number of processed events: 400 (read)
[2025-10-12 13:47:40] 2025-10-12 17:46:58,498 | INFO     | executing command: lscpu
[2025-10-12 13:47:40] 2025-10-12 17:46:58,527 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 13:47:40] 2025-10-12 17:46:58,971 | INFO     | time since job start (4410s) is within the limit (172800.0s)
[2025-10-12 13:47:40] 2025-10-12 17:47:00,311 | INFO     | monitor loop #330: job 0:6839866221 is in state 'finished'
[2025-10-12 13:47:40] 2025-10-12 17:47:00,311 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:47:40] 2025-10-12 17:47:00,976 | INFO     | time since job start (4412s) is within the limit (172800.0s)
[2025-10-12 13:47:40] 2025-10-12 17:47:02,814 | INFO     | monitor loop #331: job 0:6839866221 is in state 'finished'
[2025-10-12 13:47:40] 2025-10-12 17:47:02,815 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:47:40] 2025-10-12 17:47:02,981 | INFO     | time since job start (4414s) is within the limit (172800.0s)
[2025-10-12 13:47:40] 2025-10-12 17:47:03,342 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 13:47:40] 2025-10-12 17:47:03,346 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-12 13:47:40] 2025-10-12 17:47:03,348 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839866221/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:47:40] 2025-10-12 17:47:03,349 | INFO     | extracted standard info from prmon json
[2025-10-12 13:47:40] 2025-10-12 17:47:03,349 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 13:47:40] 2025-10-12 17:47:03,349 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:47:40] 2025-10-12 17:47:03,349 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:47:40] 2025-10-12 17:47:03,349 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:47:40] 2025-10-12 17:47:03,351 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:47:40] 2025-10-12 17:47:03,351 | INFO     | sum of square deviations: 85136480.0
[2025-10-12 13:47:40] 2025-10-12 17:47:03,351 | INFO     | sum of deviations: -7144013109.000004
[2025-10-12 13:47:40] 2025-10-12 17:47:03,351 | INFO     | mean x: 1760289094.0
[2025-10-12 13:47:40] 2025-10-12 17:47:03,351 | INFO     | mean y: 2834957.876923077
[2025-10-12 13:47:40] 2025-10-12 17:47:03,352 | INFO     | -- intersect: 147713056982.1577
[2025-10-12 13:47:40] 2025-10-12 17:47:03,352 | INFO     | intersect: 147713056982.1577
[2025-10-12 13:47:40] 2025-10-12 17:47:03,352 | INFO     | chi2: 0.09337423416356368
[2025-10-12 13:47:40] 2025-10-12 17:47:03,352 | INFO     | -- intersect: 147713056982.1577
[2025-10-12 13:47:40] 2025-10-12 17:47:03,352 | INFO     | current memory leak: -83.91 B/s (using 65 data points, chi2=0.09)
[2025-10-12 13:47:40] 2025-10-12 17:47:03,352 | INFO     | could have reported an average CPU frequency of 2054 MHz (6 samples)
[2025-10-12 13:47:40] 2025-10-12 17:47:03,353 | INFO     | ..............................
[2025-10-12 13:47:40] 2025-10-12 17:47:03,353 | INFO     | . Timing measurements:
[2025-10-12 13:47:40] 2025-10-12 17:47:03,353 | INFO     | . get job = 0 s
[2025-10-12 13:47:40] 2025-10-12 17:47:03,353 | INFO     | . initial setup = 2 s
[2025-10-12 13:47:40] 2025-10-12 17:47:03,353 | INFO     | . payload setup = 7 s
[2025-10-12 13:47:40] 2025-10-12 17:47:03,353 | INFO     | . stage-in = 0 s
[2025-10-12 13:47:40] 2025-10-12 17:47:03,353 | INFO     | . payload execution = 4380 s
[2025-10-12 13:47:40] 2025-10-12 17:47:03,353 | INFO     | . stage-out = 0 s
[2025-10-12 13:47:40] 2025-10-12 17:47:03,353 | INFO     | . log creation = 0 s
[2025-10-12 13:47:40] 2025-10-12 17:47:03,353 | INFO     | ..............................
[2025-10-12 13:47:40] 2025-10-12 17:47:03,435 | INFO     | 
[2025-10-12 13:47:40] 2025-10-12 17:47:03,435 | INFO     | job summary report
[2025-10-12 13:47:40] 2025-10-12 17:47:03,435 | INFO     | --------------------------------------------------
[2025-10-12 13:47:40] 2025-10-12 17:47:03,435 | INFO     | PanDA job id: 6839866221
[2025-10-12 13:47:40] 2025-10-12 17:47:03,436 | INFO     | task id: 46676269
[2025-10-12 13:47:40] 2025-10-12 17:47:03,436 | INFO     | errors: (none)
[2025-10-12 13:47:40] 2025-10-12 17:47:03,436 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:47:40] 2025-10-12 17:47:03,436 | INFO     | pilot state: finished 
[2025-10-12 13:47:40] 2025-10-12 17:47:03,436 | INFO     | transexitcode: 0
[2025-10-12 13:47:40] 2025-10-12 17:47:03,436 | INFO     | exeerrorcode: 0
[2025-10-12 13:47:40] 2025-10-12 17:47:03,437 | INFO     | exeerrordiag: 
[2025-10-12 13:47:40] 2025-10-12 17:47:03,437 | INFO     | exitcode: 0
[2025-10-12 13:47:40] 2025-10-12 17:47:03,437 | INFO     | exitmsg: OK
[2025-10-12 13:47:40] 2025-10-12 17:47:03,437 | INFO     | cpuconsumptiontime: 45537 s
[2025-10-12 13:47:40] 2025-10-12 17:47:03,437 | INFO     | nevents: 400
[2025-10-12 13:47:40] 2025-10-12 17:47:03,437 | INFO     | neventsw: 0
[2025-10-12 13:47:40] 2025-10-12 17:47:03,438 | INFO     | pid: 29021
[2025-10-12 13:47:40] 2025-10-12 17:47:03,438 | INFO     | pgrp: 29021
[2025-10-12 13:47:40] 2025-10-12 17:47:03,438 | INFO     | corecount: 12
[2025-10-12 13:47:40] 2025-10-12 17:47:03,438 | INFO     | event service: False
[2025-10-12 13:47:40] 2025-10-12 17:47:03,438 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 4390: 2375223, 4392: 2384277, 4399: 2384415}
[2025-10-12 13:47:40] 2025-10-12 17:47:03,438 | INFO     | --------------------------------------------------
[2025-10-12 13:47:40] 2025-10-12 17:47:03,438 | INFO     | 
[2025-10-12 13:47:40] 2025-10-12 17:47:03,439 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 13:47:40] 2025-10-12 17:47:03,463 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:47:40] 2025-10-12 17:47:03,463 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:47:40] 2025-10-12 17:47:03,463 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:47:40] 2025-10-12 17:47:03,463 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:47:40] 2025-10-12 17:47:03,464 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:47:40] 2025-10-12 17:47:03,464 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:47:40] 2025-10-12 17:47:03,464 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:47:40] 2025-10-12 17:47:03,464 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:47:40] 2025-10-12 17:47:03,464 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:47:40] 2025-10-12 17:47:03,464 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:47:40] 2025-10-12 17:47:03,465 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:47:40] 2025-10-12 17:47:03,465 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:47:40] 2025-10-12 17:47:03,465 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:47:40] 2025-10-12 17:47:03,465 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:47:40] 2025-10-12 17:47:03,465 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:47:40] 2025-10-12 17:47:03,465 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:47:40] 2025-10-12 17:47:03,466 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:47:40] 2025-10-12 17:47:03,466 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:47:40] 2025-10-12 17:47:03,466 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:47:40] 2025-10-12 17:47:03,466 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:47:40] 2025-10-12 17:47:03,466 | INFO     | job 6839866221 has completed (purged errors)
[2025-10-12 13:47:40] 2025-10-12 17:47:03,467 | INFO     | overall cleanup function is called
[2025-10-12 13:47:40] 2025-10-12 17:47:04,103 | INFO     | PID=22647 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 13:47:40] 2025-10-12 17:47:04,471 | INFO     | --- collectZombieJob: --- 10, [29021]
[2025-10-12 13:47:40] 2025-10-12 17:47:04,471 | INFO     | zombie collector waiting for pid 29021
[2025-10-12 13:47:40] 2025-10-12 17:47:04,471 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:47:40] 2025-10-12 17:47:04,471 | INFO     | collected zombie processes
[2025-10-12 13:47:40] 2025-10-12 17:47:04,471 | INFO     | will attempt to kill all subprocesses of pid=29021
[2025-10-12 13:47:40] 2025-10-12 17:47:04,560 | INFO     | process IDs to be killed: [29021] (in reverse order)
[2025-10-12 13:47:40] 2025-10-12 17:47:04,613 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:47:40] 2025-10-12 17:47:04,614 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:47:40] 2025-10-12 17:47:04,617 | INFO     | did not find any defunct processes belonging to 29021
[2025-10-12 13:47:40] 2025-10-12 17:47:04,620 | INFO     | did not find any defunct processes belonging to 29021
[2025-10-12 13:47:40] 2025-10-12 17:47:04,620 | INFO     | ready for new job
[2025-10-12 13:47:40] 2025-10-12 17:47:04,620 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:47:40] 2025-10-12 17:47:04,621 | INFO     | ***************************************
[2025-10-12 13:47:40] 2025-10-12 17:47:04,621 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:47:40] 2025-10-12 17:47:04,621 | INFO     | ***************************************
[2025-10-12 13:47:40] 2025-10-12 17:47:04,621 | INFO     | 
[2025-10-12 13:47:40] 2025-10-12 17:47:04,622 | INFO     | architecture information:
[2025-10-12 13:47:40] 2025-10-12 17:47:04,622 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:47:40] 2025-10-12 17:47:04,637 | INFO     | cat /etc/os-release:
[2025-10-12 13:47:40] NAME="CentOS Linux"
[2025-10-12 13:47:40] VERSION="7 (Core)"
[2025-10-12 13:47:40] ID="centos"
[2025-10-12 13:47:40] ID_LIKE="rhel fedora"
[2025-10-12 13:47:40] VERSION_ID="7"
[2025-10-12 13:47:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:47:40] ANSI_COLOR="0;31"
[2025-10-12 13:47:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:47:40] HOME_URL="https://www.centos.org/"
[2025-10-12 13:47:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:47:40] 
[2025-10-12 13:47:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:47:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:47:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:47:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:47:40] 
[2025-10-12 13:47:40] 2025-10-12 17:47:04,638 | INFO     | ***************************************
[2025-10-12 13:47:40] 2025-10-12 17:47:05,141 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 13:47:40] 2025-10-12 17:47:05,157 | INFO     | sufficient remaining disk space (29372710912 B)
[2025-10-12 13:47:40] 2025-10-12 17:47:05,158 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:47:40] 2025-10-12 17:47:05,158 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:47:40] 2025-10-12 17:47:05,158 | INFO     | update_server=False
[2025-10-12 13:47:40] 2025-10-12 17:47:05,158 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:47:40] 2025-10-12 17:47:05,159 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:47:40] 2025-10-12 17:47:05,159 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:47:40] 2025-10-12 17:47:05,318 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 13:47:40] 2025-10-12 17:47:05,318 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 13:47:40] 2025-10-12 17:47:05,326 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:47:40] 2025-10-12 17:47:05,326 | INFO     | will abort loop
[2025-10-12 13:47:40] 2025-10-12 17:47:06,096 | INFO     | all data control threads have been joined
[2025-10-12 13:47:40] 2025-10-12 17:47:06,160 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:47:40] 2025-10-12 17:47:06,164 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:47:40] 2025-10-12 17:47:06,248 | INFO     | all payload control threads have been joined
[2025-10-12 13:47:40] 2025-10-12 17:47:06,332 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:47:40] 2025-10-12 17:47:06,730 | INFO     | all job control threads have been joined
[2025-10-12 13:47:40] 2025-10-12 17:47:06,756 | INFO     | [job] validate thread has finished
[2025-10-12 13:47:40] 2025-10-12 17:47:06,783 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:47:40] 2025-10-12 17:47:06,821 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:47:40] 2025-10-12 17:47:06,918 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:47:40] 2025-10-12 17:47:07,101 | INFO     | [data] control thread has finished
[2025-10-12 13:47:40] 2025-10-12 17:47:07,149 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:47:40] 2025-10-12 17:47:07,164 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:47:40] 2025-10-12 17:47:07,254 | INFO     | [payload] control thread has finished
[2025-10-12 13:47:40] 2025-10-12 17:47:07,283 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:47:40] 2025-10-12 17:47:07,415 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:47:40] 2025-10-12 17:47:07,632 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:47:40] 2025-10-12 17:47:07,633 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:47:40] 2025-10-12 17:47:07,736 | INFO     | [job] control thread has finished
[2025-10-12 13:47:40] 2025-10-12 17:47:11,155 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:47:40] 2025-10-12 17:47:34,789 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:47:40] 2025-10-12 17:47:34,967 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139635738986304)>', '<ExcThread(monitor, started 139635040687872)>']
[2025-10-12 13:47:40] 2025-10-12 17:47:36,297 | INFO     | PID=22647 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 13:47:40] 2025-10-12 17:47:36,298 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:47:40] 2025-10-12 17:47:36,298 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:47:40] 2025-10-12 17:47:36,298 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:47:40] 2025-10-12 17:47:36,298 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:47:40] 2025-10-12 17:47:36,298 | INFO     | [monitor] control thread has ended
[2025-10-12 13:47:40] 2025-10-12 17:47:39,979 | INFO     | all workflow threads have been joined
[2025-10-12 13:47:40] 2025-10-12 17:47:39,993 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:47:40] 2025-10-12 17:47:39,994 | INFO     | traces error code: 0
[2025-10-12 13:47:40] 2025-10-12 17:47:39,994 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:47:40] 2025-10-12 17:47:40,081 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:47:40] 2025-10-12 17:47:40,085 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:47:40] 2025-10-12 17:47:40,089 [wrapper] pilotpid: 22647
[2025-10-12 13:47:40] 2025-10-12 17:47:40,093 [wrapper] Pilot exit status: 0
[2025-10-12 13:47:40] 2025-10-12 17:47:40,107 [wrapper] pandaids: 6839866221
[2025-10-12 13:47:40] 2025-10-12 17:47:40,148 [wrapper] cleanup supervisor_pilot  9904 22648
[2025-10-12 13:47:40] 2025-10-12 17:47:40,152 [wrapper] Test setup, not cleaning
[2025-10-12 13:47:40] 2025-10-12 17:47:40,156 [wrapper] apfmon messages muted
[2025-10-12 13:47:40] 2025-10-12 17:47:40,160 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:47:40] 2025-10-12 17:47:40,164 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:47:40]  *** Error codes and diagnostics ***
[2025-10-12 13:47:40]     "exeErrorCode": 0,
[2025-10-12 13:47:40]     "exeErrorDiag": "",
[2025-10-12 13:47:40]     "pilotErrorCode": 0,
[2025-10-12 13:47:40]     "pilotErrorDiag": "",
[2025-10-12 13:47:40]  *** Listing of results directory ***
[2025-10-12 13:47:40] total 406040
[2025-10-12 13:47:40] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 06:16 pilot3.tar.gz
[2025-10-12 13:47:40] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 06:18 queuedata.json
[2025-10-12 13:47:40] -rwx------ 1 boincer umatlas     36292 Oct 12 06:18 runpilot2-wrapper.sh
[2025-10-12 13:47:40] -rw-r--r-- 1 boincer umatlas       100 Oct 12 12:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:47:40] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 12:33 run_atlas
[2025-10-12 13:47:40] -rw-r--r-- 1 boincer umatlas       105 Oct 12 12:33 job.xml
[2025-10-12 13:47:40] -rw-r--r-- 2 boincer umatlas 219341025 Oct 12 12:33 EVNT.46676267._003615.pool.root.1
[2025-10-12 13:47:40] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:33 start_atlas.sh
[2025-10-12 13:47:40] drwxrwx--x 2 boincer umatlas      4096 Oct 12 12:33 shared
[2025-10-12 13:47:40] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 12:33 input.tar.gz
[2025-10-12 13:47:40] -rw-r--r-- 1 boincer umatlas         0 Oct 12 12:33 boinc_lockfile
[2025-10-12 13:47:40] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 12:33 pandaJob.out
[2025-10-12 13:47:40] -rw------- 1 boincer umatlas    975528 Oct 12 12:33 agis_schedconf.cvmfs.json
[2025-10-12 13:47:40] -rw------- 1 boincer umatlas   1560580 Oct 12 12:33 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:47:40] drwx------ 5 boincer umatlas      4096 Oct 12 12:33 pilot3
[2025-10-12 13:47:40] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 13:37 init_data.xml
[2025-10-12 13:47:40] -rw------- 1 boincer umatlas 190465468 Oct 12 13:46 HITS.46676269._075939.pool.root.1
[2025-10-12 13:47:40] -rw-r--r-- 1 boincer umatlas       529 Oct 12 13:46 boinc_task_state.xml
[2025-10-12 13:47:40] -rw------- 1 boincer umatlas      1048 Oct 12 13:46 memory_monitor_summary.json
[2025-10-12 13:47:40] -rw------- 1 boincer umatlas    397876 Oct 12 13:46 log.46676269._075939.job.log.tgz.1
[2025-10-12 13:47:40] -rw------- 1 boincer umatlas      7860 Oct 12 13:47 heartbeat.json
[2025-10-12 13:47:40] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 13:47 boinc_mmap_file
[2025-10-12 13:47:40] -rw-r--r-- 1 boincer umatlas        27 Oct 12 13:47 wrapper_checkpoint.txt
[2025-10-12 13:47:40] -rw------- 1 boincer umatlas        95 Oct 12 13:47 pilot_heartbeat.json
[2025-10-12 13:47:40] -rw------- 1 boincer umatlas      4932 Oct 12 13:47 pilotlog.txt
[2025-10-12 13:47:40] -rw------- 1 boincer umatlas    641384 Oct 12 13:47 log.46676269._075939.job.log.1
[2025-10-12 13:47:40] -rw------- 1 boincer umatlas       357 Oct 12 13:47 output.list
[2025-10-12 13:47:40] -rw-r--r-- 1 boincer umatlas       620 Oct 12 13:47 runtime_log
[2025-10-12 13:47:40] -rw------- 1 boincer umatlas   1054720 Oct 12 13:47 result.tar.gz
[2025-10-12 13:47:40] -rw-r--r-- 1 boincer umatlas      8700 Oct 12 13:47 runtime_log.err
[2025-10-12 13:47:40] -rw------- 1 boincer umatlas       658 Oct 12 13:47 oKNLDmBL8R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQRjNDmouyoom.diag
[2025-10-12 13:47:40] -rw-r--r-- 1 boincer umatlas     22083 Oct 12 13:47 stderr.txt
[2025-10-12 13:47:40] HITS file was successfully produced:
[2025-10-12 13:47:40] -rw------- 1 boincer umatlas 190465468 Oct 12 13:46 shared/HITS.pool.root.1
[2025-10-12 13:47:40]  *** Contents of shared directory: ***
[2025-10-12 13:47:40] total 401816
[2025-10-12 13:47:40] -rw-r--r-- 2 boincer umatlas 219341025 Oct 12 12:33 ATLAS.root_0
[2025-10-12 13:47:40] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:33 start_atlas.sh
[2025-10-12 13:47:40] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 12:33 input.tar.gz
[2025-10-12 13:47:40] -rw------- 1 boincer umatlas 190465468 Oct 12 13:46 HITS.pool.root.1
[2025-10-12 13:47:40] -rw------- 1 boincer umatlas   1054720 Oct 12 13:47 result.tar.gz
13:47:42 (18974): run_atlas exited; CPU time 45517.707710
13:47:42 (18974): called boinc_finish(0)

</stderr_txt>
]]>

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