Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:39:27 (1500876): wrapper (7.7.26015): starting
09:39:27 (1500876): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 09:39:27] Arguments: --nthreads 8
[2025-10-12 09:39:27] Threads: 8
[2025-10-12 09:39:27] Checking for CVMFS
[2025-10-12 09:39:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 09:39:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 09:39:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 09:39:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 09:39:29] 2.11.3.0 1872 30171 211596 151627 3 209 37078175 45568001 14695 130560 0 189641129 99.867 74425445 22924 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-12 09:39:29] CVMFS is ok
[2025-10-12 09:39:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 09:39:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 09:39:29] Further information can be found at the LHC@home message board.
[2025-10-12 09:39:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 09:39:29] Checking for apptainer binary...
[2025-10-12 09:39:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 09:39:29] Running /usr/bin/apptainer --version
[2025-10-12 09:39:29] apptainer version 1.4.1-1.el9
[2025-10-12 09:39:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 09:39:29] wns0012.triumf.lcg
[2025-10-12 09:39:29] apptainer works
[2025-10-12 09:39:29] Set ATHENA_PROC_NUMBER=8
[2025-10-12 09:39:29] Set ATHENA_CORE_NUMBER=8
[2025-10-12 09:39:29] Starting ATLAS job with PandaID=6840223461
[2025-10-12 09:39:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 09:45:21]  *** The last 200 lines of the pilot log: ***
[2025-10-12 09:45:21] 2025-10-12 16:44:48,408 | WARNING  | wrong length of table data, x=[1760287288.0, 1760287349.0], y=[24733.0, 465767.0] (must be same and length>=4)
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | ..............................
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . Timing measurements:
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . get job = 0 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . initial setup = 4 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . payload setup = 30 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . stage-in = 0 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . payload execution = 83 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . stage-out = 0 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . log creation = 0 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | ..............................
[2025-10-12 09:45:21] 2025-10-12 16:44:48,410 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 09:45:21] 2025-10-12 16:44:48,410 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6840223461/pilotlog.txt
[2025-10-12 09:45:21] 2025-10-12 16:44:48,429 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-12 09:45:21] - Log from pilotlog.txt -
[2025-10-12 09:45:21] 2025-10-12 16:44:48,406 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6840223461/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:45:21] 2025-10-12 16:44:48,407 | INFO     | extracted standard info from prmon json
[2025-10-12 09:45:21] 2025-10-12 16:44:48,407 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 09:45:21] 2025-10-12 16:44:48,407 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 09:45:21] 2025-10-12 16:44:48,408 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 09:45:21] 2025-10-12 16:44:48,408 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 09:45:21] 2025-10-12 16:44:48,408 | WARNING  | wrong length of table data, x=[1760287288.0, 1760287349.0], y=[24733.0, 465767.0] (must be same and length>=4)
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | ..............................
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . Timing measurements:
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . get job = 0 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . initial setup = 4 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . payload setup = 30 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . stage-in = 0 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . payload execution = 83 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . stage-out = 0 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . log creation = 0 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | ..............................
[2025-10-12 09:45:21] 2025-10-12 16:44:48,410 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 09:45:21] 2025-10-12 16:44:48,410 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6840223461/pilotlog.txt
[2025-10-12 09:45:21] 2025-10-12 16:44:48,430 | WARNING  | 
[2025-10-12 09:45:21] [begin log extracts]
[2025-10-12 09:45:21] - Log from pilotlog.txt -
[2025-10-12 09:45:21] 2025-10-12 16:44:48,406 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6840223461/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:45:21] 2025-10-12 16:44:48,407 | INFO     | extracted standard info from prmon json
[2025-10-12 09:45:21] 2025-10-12 16:44:48,407 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 09:45:21] 2025-10-12 16:44:48,407 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 09:45:21] 2025-10-12 16:44:48,408 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 09:45:21] 2025-10-12 16:44:48,408 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 09:45:21] 2025-10-12 16:44:48,408 | WARNING  | wrong length of table data, x=[1760287288.0, 1760287349.0], y=[24733.0, 465767.0] (must be same and length>=4)
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | ..............................
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . Timing measurements:
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . get job = 0 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . initial setup = 4 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . payload setup = 30 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . stage-in = 0 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . payload execution = 83 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . stage-out = 0 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | . log creation = 0 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,409 | INFO     | ..............................
[2025-10-12 09:45:21] 2025-10-12 16:44:48,410 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 09:45:21] 2025-10-12 16:44:48,410 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6840223461/pilotlog.txt
[2025-10-12 09:45:21] [end log extracts]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,430 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-12 09:45:21] 2025-10-12 16:44:48,435 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-12 09:45:21] 2025-10-12 16:44:48,863 | INFO     | 
[2025-10-12 09:45:21] 2025-10-12 16:44:48,863 | INFO     | job summary report
[2025-10-12 09:45:21] 2025-10-12 16:44:48,863 | INFO     | --------------------------------------------------
[2025-10-12 09:45:21] 2025-10-12 16:44:48,863 | INFO     | PanDA job id: 6840223461
[2025-10-12 09:45:21] 2025-10-12 16:44:48,863 | INFO     | task id: 46676269
[2025-10-12 09:45:21] 2025-10-12 16:44:48,864 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-12 09:42:21,253 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-12 09:45:21] 2025-10-12 16:44:48,864 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 09:45:21] 2025-10-12 16:44:48,864 | INFO     | pilot state: failed 
[2025-10-12 09:45:21] 2025-10-12 16:44:48,864 | INFO     | transexitcode: 65
[2025-10-12 09:45:21] 2025-10-12 16:44:48,864 | INFO     | exeerrorcode: 65
[2025-10-12 09:45:21] 2025-10-12 16:44:48,864 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 09:45:21] 2025-10-12 16:44:48,864 | INFO     | exitcode: 65
[2025-10-12 09:45:21] 2025-10-12 16:44:48,864 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 09:45:21] 2025-10-12 16:44:48,864 | INFO     | cpuconsumptiontime: 21 s
[2025-10-12 09:45:21] 2025-10-12 16:44:48,864 | INFO     | nevents: 0
[2025-10-12 09:45:21] 2025-10-12 16:44:48,864 | INFO     | neventsw: 0
[2025-10-12 09:45:21] 2025-10-12 16:44:48,864 | INFO     | pid: 1511511
[2025-10-12 09:45:21] 2025-10-12 16:44:48,864 | INFO     | pgrp: 1511511
[2025-10-12 09:45:21] 2025-10-12 16:44:48,864 | INFO     | corecount: 8
[2025-10-12 09:45:21] 2025-10-12 16:44:48,864 | INFO     | event service: False
[2025-10-12 09:45:21] 2025-10-12 16:44:48,865 | INFO     | sizes: {0: 2348854, 1: 2348882, 11: 2348882, 15: 2349172, 22: 2349200, 118: 2372526, 119: 2376818, 121: 2376846, 253: 2377012}
[2025-10-12 09:45:21] 2025-10-12 16:44:48,865 | INFO     | --------------------------------------------------
[2025-10-12 09:45:21] 2025-10-12 16:44:48,865 | INFO     | 
[2025-10-12 09:45:21] 2025-10-12 16:44:48,865 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-12 09:45:21] 2025-10-12 16:44:48,931 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,932 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,932 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,932 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,932 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,932 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,932 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,932 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,932 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,932 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,932 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,932 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,932 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,932 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,933 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,933 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,933 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,933 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 09:45:21] 2025-10-12 16:44:48,933 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,933 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 09:45:21] 2025-10-12 16:44:48,933 | INFO     | job 6840223461 has completed (purged errors)
[2025-10-12 09:45:21] 2025-10-12 16:44:48,933 | INFO     | overall cleanup function is called
[2025-10-12 09:45:21] 2025-10-12 16:44:49,940 | INFO     | --- collectZombieJob: --- 10, [1511511]
[2025-10-12 09:45:21] 2025-10-12 16:44:49,940 | INFO     | zombie collector waiting for pid 1511511
[2025-10-12 09:45:21] 2025-10-12 16:44:49,940 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 09:45:21] 2025-10-12 16:44:49,940 | INFO     | collected zombie processes
[2025-10-12 09:45:21] 2025-10-12 16:44:49,940 | INFO     | will attempt to kill all subprocesses of pid=1511511
[2025-10-12 09:45:21] 2025-10-12 16:44:50,506 | INFO     | process IDs to be killed: [1511511] (in reverse order)
[2025-10-12 09:45:21] 2025-10-12 16:44:50,628 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 09:45:21] 2025-10-12 16:44:50,629 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 09:45:21] 2025-10-12 16:44:50,660 | INFO     | did not find any defunct processes belonging to 1511511
[2025-10-12 09:45:21] 2025-10-12 16:44:50,718 | INFO     | did not find any defunct processes belonging to 1511511
[2025-10-12 09:45:21] 2025-10-12 16:44:50,718 | INFO     | ready for new job
[2025-10-12 09:45:21] 2025-10-12 16:44:50,718 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 09:45:21] 2025-10-12 16:44:50,726 | INFO     | ***************************************
[2025-10-12 09:45:21] 2025-10-12 16:44:50,727 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 09:45:21] 2025-10-12 16:44:50,727 | INFO     | ***************************************
[2025-10-12 09:45:21] 2025-10-12 16:44:50,727 | INFO     | 
[2025-10-12 09:45:21] 2025-10-12 16:44:50,752 | INFO     | architecture information:
[2025-10-12 09:45:21] 2025-10-12 16:44:50,758 | INFO     | executing command: cat /etc/os-release
[2025-10-12 09:45:21] 2025-10-12 16:44:50,829 | INFO     | cat /etc/os-release:
[2025-10-12 09:45:21] NAME="CentOS Linux"
[2025-10-12 09:45:21] VERSION="7 (Core)"
[2025-10-12 09:45:21] ID="centos"
[2025-10-12 09:45:21] ID_LIKE="rhel fedora"
[2025-10-12 09:45:21] VERSION_ID="7"
[2025-10-12 09:45:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 09:45:21] ANSI_COLOR="0;31"
[2025-10-12 09:45:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 09:45:21] HOME_URL="https://www.centos.org/"
[2025-10-12 09:45:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 09:45:21] 
[2025-10-12 09:45:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 09:45:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 09:45:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 09:45:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 09:45:21] 
[2025-10-12 09:45:21] 2025-10-12 16:44:50,829 | INFO     | ***************************************
[2025-10-12 09:45:21] 2025-10-12 16:44:51,333 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-12 09:45:21] 2025-10-12 16:44:51,400 | INFO     | sufficient remaining disk space (1323320737792 B)
[2025-10-12 09:45:21] 2025-10-12 16:44:51,401 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 09:45:21] 2025-10-12 16:44:51,401 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 09:45:21] 2025-10-12 16:44:51,401 | INFO     | update_server=False
[2025-10-12 09:45:21] 2025-10-12 16:44:51,401 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 09:45:21] 2025-10-12 16:44:51,480 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 09:45:21] 2025-10-12 16:44:51,480 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 09:45:21] 2025-10-12 16:44:51,481 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:45:21] 2025-10-12 16:44:51,481 | INFO     | will abort loop
[2025-10-12 09:45:21] 2025-10-12 16:44:51,803 | INFO     | all payload control threads have been joined
[2025-10-12 09:45:21] 2025-10-12 16:44:52,068 | INFO     | all data control threads have been joined
[2025-10-12 09:45:21] 2025-10-12 16:44:52,393 | INFO     | all job control threads have been joined
[2025-10-12 09:45:21] 2025-10-12 16:44:52,411 | INFO     | [job] retrieve thread has finished
[2025-10-12 09:45:21] 2025-10-12 16:44:52,487 | INFO     | [job] job monitor thread has finished
[2025-10-12 09:45:21] 2025-10-12 16:44:52,561 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 09:45:21] 2025-10-12 16:44:52,658 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 09:45:21] 2025-10-12 16:44:52,721 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 09:45:21] 2025-10-12 16:44:52,753 | INFO     | [payload] validate_post thread has finished
[2025-10-12 09:45:21] 2025-10-12 16:44:52,809 | INFO     | [payload] control thread has finished
[2025-10-12 09:45:21] 2025-10-12 16:44:52,872 | INFO     | [payload] failed_post thread has finished
[2025-10-12 09:45:21] 2025-10-12 16:44:53,074 | INFO     | [data] control thread has finished
[2025-10-12 09:45:21] 2025-10-12 16:44:53,082 | INFO     | [job] validate thread has finished
[2025-10-12 09:45:21] 2025-10-12 16:44:53,190 | INFO     | [data] copytool_in thread has finished
[2025-10-12 09:45:21] 2025-10-12 16:44:53,295 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 09:45:21] 2025-10-12 16:44:53,357 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 09:45:21] 2025-10-12 16:44:53,405 | INFO     | [job] control thread has finished
[2025-10-12 09:45:21] 2025-10-12 16:44:53,537 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:45:21] 2025-10-12 16:44:53,562 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 09:45:21] 2025-10-12 16:44:54,543 | INFO     | [job] queue monitor thread has finished
[2025-10-12 09:45:21] 2025-10-12 16:44:54,567 | INFO     | [data] copytool_out thread has finished
[2025-10-12 09:45:21] 2025-10-12 16:44:57,377 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 09:45:21] 2025-10-12 16:45:00,744 | INFO     | [monitor] cgroup control has ended
[2025-10-12 09:45:21] 2025-10-12 16:45:01,288 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139903302989632)>', '<ExcThread(monitor, started 139902779909888)>']
[2025-10-12 09:45:21] 2025-10-12 16:45:06,314 | INFO     | all workflow threads have been joined
[2025-10-12 09:45:21] 2025-10-12 16:45:06,314 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 09:45:21] 2025-10-12 16:45:06,315 | INFO     | traces error code: 0
[2025-10-12 09:45:21] 2025-10-12 16:45:06,315 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 09:45:21] 2025-10-12 16:45:21,039 | INFO     | PID=1504579 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 09:45:21] 2025-10-12 16:45:21,040 | INFO     | .. there are 26 such processes running
[2025-10-12 09:45:21] 2025-10-12 16:45:21,040 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 09:45:21] 2025-10-12 16:45:21,041 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 09:45:21] 2025-10-12 16:45:21,041 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 09:45:21] 2025-10-12 16:45:21,041 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 09:45:21] 2025-10-12 16:45:21,041 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 09:45:21] 2025-10-12 16:45:21,041 | INFO     | [monitor] control thread has ended
[2025-10-12 09:45:21] 2025-10-12 16:45:21,358 [wrapper] ==== pilot stdout END ====
[2025-10-12 09:45:21] 2025-10-12 16:45:21,377 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 09:45:21] 2025-10-12 16:45:21,393 [wrapper] pilotpid: 1504579
[2025-10-12 09:45:21] 2025-10-12 16:45:21,406 [wrapper] Pilot exit status: 0
[2025-10-12 09:45:21] 2025-10-12 16:45:21,445 [wrapper] pandaids: 6840223461
[2025-10-12 09:45:21] 2025-10-12 16:45:21,609 [wrapper] cleanup supervisor_pilot 1504585 1504580
[2025-10-12 09:45:21] 2025-10-12 16:45:21,619 [wrapper] Test setup, not cleaning
[2025-10-12 09:45:21] 2025-10-12 16:45:21,627 [wrapper] apfmon messages muted
[2025-10-12 09:45:21] 2025-10-12 16:45:21,636 [wrapper] ==== wrapper stdout END ====
[2025-10-12 09:45:21] 2025-10-12 16:45:21,649 [wrapper] ==== wrapper stderr END ====
[2025-10-12 09:45:21]  *** Error codes and diagnostics ***
[2025-10-12 09:45:21]     "exeErrorCode": 65,
[2025-10-12 09:45:21]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 09:45:21]     "pilotErrorCode": 1305,
[2025-10-12 09:45:21]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 09:45:21]  *** Listing of results directory ***
[2025-10-12 09:45:21] total 217820
[2025-10-12 09:45:21] -rw-r--r--. 1 boinc boinc    557409 Oct 12 08:00 pilot3.tar.gz
[2025-10-12 09:45:21] -rw-r--r--. 1 boinc boinc      5112 Oct 12 08:04 queuedata.json
[2025-10-12 09:45:21] -rwx------. 1 boinc boinc     36292 Oct 12 08:04 runpilot2-wrapper.sh
[2025-10-12 09:45:21] -rw-r--r--. 1 boinc boinc       100 Oct 12 09:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 09:45:21] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 09:39 run_atlas
[2025-10-12 09:45:21] -rw-r--r--. 1 boinc boinc       105 Oct 12 09:39 job.xml
[2025-10-12 09:45:21] -rw-r--r--. 1 boinc boinc      6444 Oct 12 09:39 init_data.xml
[2025-10-12 09:45:21] -rw-r--r--. 2 boinc boinc 218909948 Oct 12 09:39 EVNT.46676267._004545.pool.root.1
[2025-10-12 09:45:21] -rw-r--r--. 2 boinc boinc     15120 Oct 12 09:39 start_atlas.sh
[2025-10-12 09:45:21] drwxrwx--x. 2 boinc boinc      4096 Oct 12 09:39 shared
[2025-10-12 09:45:21] -rw-r--r--. 2 boinc boinc    569685 Oct 12 09:39 input.tar.gz
[2025-10-12 09:45:21] -rw-r--r--. 1 boinc boinc         0 Oct 12 09:39 boinc_lockfile
[2025-10-12 09:45:21] -rw-r--r--. 1 boinc boinc      2550 Oct 12 09:39 pandaJob.out
[2025-10-12 09:45:21] -rw-------. 1 boinc boinc    975528 Oct 12 09:39 agis_schedconf.cvmfs.json
[2025-10-12 09:45:21] -rw-------. 1 boinc boinc   1560580 Oct 12 09:39 agis_ddmendpoints.agis.ALL.json
[2025-10-12 09:45:21] drwx------. 5 boinc boinc      4096 Oct 12 09:40 pilot3
[2025-10-12 09:45:21] -rw-r--r--. 1 boinc boinc       524 Oct 12 09:42 boinc_task_state.xml
[2025-10-12 09:45:21] -rw-------. 1 boinc boinc       986 Oct 12 09:42 memory_monitor_summary.json
[2025-10-12 09:45:21] -rw-------. 1 boinc boinc     22688 Oct 12 09:42 log.46676269._081570.job.log.tgz.1
[2025-10-12 09:45:21] -rw-------. 1 boinc boinc      8400 Oct 12 09:44 heartbeat.json
[2025-10-12 09:45:21] -rw-r--r--. 1 boinc boinc      8192 Oct 12 09:45 boinc_mmap_file
[2025-10-12 09:45:21] -rw-r--r--. 1 boinc boinc        23 Oct 12 09:45 wrapper_checkpoint.txt
[2025-10-12 09:45:21] -rw-------. 1 boinc boinc        95 Oct 12 09:45 pilot_heartbeat.json
[2025-10-12 09:45:21] -rw-------. 1 boinc boinc       893 Oct 12 09:45 pilotlog.txt
[2025-10-12 09:45:21] -rw-------. 1 boinc boinc     96096 Oct 12 09:45 log.46676269._081570.job.log.1
[2025-10-12 09:45:21] -rw-------. 1 boinc boinc       188 Oct 12 09:45 output.list
[2025-10-12 09:45:21] -rw-r--r--. 1 boinc boinc       620 Oct 12 09:45 runtime_log
[2025-10-12 09:45:21] -rw-------. 1 boinc boinc    143360 Oct 12 09:45 result.tar.gz
[2025-10-12 09:45:21] -rw-------. 1 boinc boinc       646 Oct 12 09:45 ILANDmknCS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm1BUMDm6puOSm.diag
[2025-10-12 09:45:21] -rw-r--r--. 1 boinc boinc      8526 Oct 12 09:45 runtime_log.err
[2025-10-12 09:45:21] -rw-r--r--. 1 boinc boinc     21895 Oct 12 09:45 stderr.txt
[2025-10-12 09:45:21] No HITS result produced
[2025-10-12 09:45:21]  *** Contents of shared directory: ***
[2025-10-12 09:45:21] total 214496
[2025-10-12 09:45:21] -rw-r--r--. 2 boinc boinc 218909948 Oct 12 09:39 ATLAS.root_0
[2025-10-12 09:45:21] -rw-r--r--. 2 boinc boinc     15120 Oct 12 09:39 start_atlas.sh
[2025-10-12 09:45:21] -rw-r--r--. 2 boinc boinc    569685 Oct 12 09:39 input.tar.gz
[2025-10-12 09:45:21] -rw-------. 1 boinc boinc    143360 Oct 12 09:45 result.tar.gz
09:45:23 (1500876): run_atlas exited; CPU time 30.640531
09:45:23 (1500876): called boinc_finish(0)

</stderr_txt>
]]>

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