Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:23:30 (1434): wrapper (7.7.26015): starting
12:23:30 (1434): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 12:23:30] Arguments: --nthreads 12
[2025-10-12 12:23:30] Threads: 12
[2025-10-12 12:23:30] Checking for CVMFS
[2025-10-12 12:23:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:23:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:23:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:23:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:23:30] 2.11.2.0 3165 8738 81740 151625 3 188 11842682 20275201 1 130560 0 8442264 99.993 288214 42920 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 12:23:30] CVMFS is ok
[2025-10-12 12:23:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:23:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:23:30] Further information can be found at the LHC@home message board.
[2025-10-12 12:23:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:23:30] Checking for apptainer binary...
[2025-10-12 12:23:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:23:30] Running /usr/bin/apptainer --version
[2025-10-12 12:23:30] apptainer version 1.3.2-1.el7
[2025-10-12 12:23:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:23:32] c-115-40.aglt2.org
[2025-10-12 12:23:32] apptainer works
[2025-10-12 12:23:32] Set ATHENA_PROC_NUMBER=12
[2025-10-12 12:23:32] Set ATHENA_CORE_NUMBER=12
[2025-10-12 12:23:32] Starting ATLAS job with PandaID=6839870911
[2025-10-12 12:23:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:29:59]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:29:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/c9/log.46676269._077148.job.log.tgz.1
[2025-10-12 13:29:59]  workdir=None
[2025-10-12 13:29:59] ]
[2025-10-12 13:29:59] 2025-10-12 17:28:44,111 | INFO     | transferring file log.46676269._077148.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839870911/log.46676269._077148.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 13:29:59] 2025-10-12 17:28:44,111 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839870911/log.46676269._077148.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._077148.job
[2025-10-12 13:29:59] 2025-10-12 17:28:44,133 | INFO     | adding to output.list: log.46676269._077148.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/c9/log.46676269._077148.job.log.tg
[2025-10-12 13:29:59] 2025-10-12 17:28:44,134 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 13:29:59] 2025-10-12 17:28:44,134 | INFO     | summary of transferred files:
[2025-10-12 13:29:59] 2025-10-12 17:28:44,134 | INFO     |  -- lfn=log.46676269._077148.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 13:29:59] 2025-10-12 17:28:44,134 | INFO     | stage-out finished correctly
[2025-10-12 13:29:59] 2025-10-12 17:28:44,670 | WARNING  | process 11803 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 13:29:59] 2025-10-12 17:28:44,670 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839870911/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:29:59] 2025-10-12 17:28:44,767 | INFO     | number of running child processes to parent process 11803: 1
[2025-10-12 13:29:59] 2025-10-12 17:28:44,767 | INFO     | maximum number of monitored processes: 6
[2025-10-12 13:29:59] 2025-10-12 17:28:45,440 | INFO     | time since job start (3898s) is within the limit (172800.0s)
[2025-10-12 13:29:59] 2025-10-12 17:28:45,671 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 13:29:59] 2025-10-12 17:28:47,270 | INFO     | monitor loop #293: job 0:6839870911 is in state 'finished'
[2025-10-12 13:29:59] 2025-10-12 17:28:47,270 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:29:59] 2025-10-12 17:28:47,446 | INFO     | time since job start (3900s) is within the limit (172800.0s)
[2025-10-12 13:29:59] 2025-10-12 17:28:48,012 | INFO     | job 6839870911 has state=finished
[2025-10-12 13:29:59] 2025-10-12 17:28:48,012 | INFO     | preparing for final server update for job 6839870911 in state='finished'
[2025-10-12 13:29:59] 2025-10-12 17:28:48,013 | INFO     | this job has now completed (state=finished)
[2025-10-12 13:29:59] 2025-10-12 17:28:48,013 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 13:29:59] 2025-10-12 17:28:48,013 | INFO     | log transfer has been attempted: DONE
[2025-10-12 13:29:59] 2025-10-12 17:28:48,014 | INFO     | job 6839870911 has finished - writing final server update
[2025-10-12 13:29:59] 2025-10-12 17:28:48,014 | INFO     | total number of processed events: 400 (read)
[2025-10-12 13:29:59] 2025-10-12 17:28:48,015 | INFO     | executing command: lscpu
[2025-10-12 13:29:59] 2025-10-12 17:28:48,052 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 13:29:59] 2025-10-12 17:28:48,560 | INFO     | PID=5304 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 13:29:59] 2025-10-12 17:28:49,561 | INFO     | time since job start (3902s) is within the limit (172800.0s)
[2025-10-12 13:29:59] 2025-10-12 17:28:49,773 | INFO     | monitor loop #294: job 0:6839870911 is in state 'finished'
[2025-10-12 13:29:59] 2025-10-12 17:28:49,773 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:29:59] 2025-10-12 17:28:51,567 | INFO     | time since job start (3904s) is within the limit (172800.0s)
[2025-10-12 13:29:59] 2025-10-12 17:28:52,276 | INFO     | monitor loop #295: job 0:6839870911 is in state 'finished'
[2025-10-12 13:29:59] 2025-10-12 17:28:52,277 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:29:59] 2025-10-12 17:28:52,559 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 13:29:59] 2025-10-12 17:28:52,561 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1817.75
[2025-10-12 13:29:59] 2025-10-12 17:28:52,563 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839870911/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:29:59] 2025-10-12 17:28:52,563 | INFO     | extracted standard info from prmon json
[2025-10-12 13:29:59] 2025-10-12 17:28:52,564 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 13:29:59] 2025-10-12 17:28:52,564 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:29:59] 2025-10-12 17:28:52,564 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:29:59] 2025-10-12 17:28:52,564 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:29:59] 2025-10-12 17:28:52,565 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:29:59] 2025-10-12 17:28:52,566 | INFO     | sum of square deviations: 57407588.0
[2025-10-12 13:29:59] 2025-10-12 17:28:52,566 | INFO     | sum of deviations: 129520080.00000003
[2025-10-12 13:29:59] 2025-10-12 17:28:52,566 | INFO     | mean x: 1760288268.0
[2025-10-12 13:29:59] 2025-10-12 17:28:52,566 | INFO     | mean y: 2708732.6666666665
[2025-10-12 13:29:59] 2025-10-12 17:28:52,566 | INFO     | -- intersect: -3968764120.267366
[2025-10-12 13:29:59] 2025-10-12 17:28:52,566 | INFO     | intersect: -3968764120.267366
[2025-10-12 13:29:59] 2025-10-12 17:28:52,567 | INFO     | chi2: 0.015409847032271612
[2025-10-12 13:29:59] 2025-10-12 17:28:52,567 | INFO     | -- intersect: -3968764120.267366
[2025-10-12 13:29:59] 2025-10-12 17:28:52,567 | INFO     | current memory leak: 2.26 B/s (using 57 data points, chi2=0.02)
[2025-10-12 13:29:59] 2025-10-12 17:28:52,567 | INFO     | could have reported an average CPU frequency of 2163 MHz (6 samples)
[2025-10-12 13:29:59] 2025-10-12 17:28:52,567 | INFO     | ..............................
[2025-10-12 13:29:59] 2025-10-12 17:28:52,567 | INFO     | . Timing measurements:
[2025-10-12 13:29:59] 2025-10-12 17:28:52,567 | INFO     | . get job = 0 s
[2025-10-12 13:29:59] 2025-10-12 17:28:52,568 | INFO     | . initial setup = 2 s
[2025-10-12 13:29:59] 2025-10-12 17:28:52,568 | INFO     | . payload setup = 7 s
[2025-10-12 13:29:59] 2025-10-12 17:28:52,568 | INFO     | . stage-in = 0 s
[2025-10-12 13:29:59] 2025-10-12 17:28:52,568 | INFO     | . payload execution = 3869 s
[2025-10-12 13:29:59] 2025-10-12 17:28:52,568 | INFO     | . stage-out = 0 s
[2025-10-12 13:29:59] 2025-10-12 17:28:52,568 | INFO     | . log creation = 0 s
[2025-10-12 13:29:59] 2025-10-12 17:28:52,568 | INFO     | ..............................
[2025-10-12 13:29:59] 2025-10-12 17:28:52,898 | INFO     | 
[2025-10-12 13:29:59] 2025-10-12 17:28:52,898 | INFO     | job summary report
[2025-10-12 13:29:59] 2025-10-12 17:28:52,898 | INFO     | --------------------------------------------------
[2025-10-12 13:29:59] 2025-10-12 17:28:52,898 | INFO     | PanDA job id: 6839870911
[2025-10-12 13:29:59] 2025-10-12 17:28:52,898 | INFO     | task id: 46676269
[2025-10-12 13:29:59] 2025-10-12 17:28:52,899 | INFO     | errors: (none)
[2025-10-12 13:29:59] 2025-10-12 17:28:52,899 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:29:59] 2025-10-12 17:28:52,899 | INFO     | pilot state: finished 
[2025-10-12 13:29:59] 2025-10-12 17:28:52,899 | INFO     | transexitcode: 0
[2025-10-12 13:29:59] 2025-10-12 17:28:52,899 | INFO     | exeerrorcode: 0
[2025-10-12 13:29:59] 2025-10-12 17:28:52,899 | INFO     | exeerrordiag: 
[2025-10-12 13:29:59] 2025-10-12 17:28:52,900 | INFO     | exitcode: 0
[2025-10-12 13:29:59] 2025-10-12 17:28:52,900 | INFO     | exitmsg: OK
[2025-10-12 13:29:59] 2025-10-12 17:28:52,900 | INFO     | cpuconsumptiontime: 41949 s
[2025-10-12 13:29:59] 2025-10-12 17:28:52,900 | INFO     | nevents: 400
[2025-10-12 13:29:59] 2025-10-12 17:28:52,900 | INFO     | neventsw: 0
[2025-10-12 13:29:59] 2025-10-12 17:28:52,900 | INFO     | pid: 11803
[2025-10-12 13:29:59] 2025-10-12 17:28:52,901 | INFO     | pgrp: 11803
[2025-10-12 13:29:59] 2025-10-12 17:28:52,901 | INFO     | corecount: 12
[2025-10-12 13:29:59] 2025-10-12 17:28:52,901 | INFO     | event service: False
[2025-10-12 13:29:59] 2025-10-12 17:28:52,901 | INFO     | sizes: {0: 2348856, 5: 2349118, 11: 2349174, 3880: 2374959, 3882: 2383957, 3883: 2384013, 3890: 2384335}
[2025-10-12 13:29:59] 2025-10-12 17:28:52,901 | INFO     | --------------------------------------------------
[2025-10-12 13:29:59] 2025-10-12 17:28:52,901 | INFO     | 
[2025-10-12 13:29:59] 2025-10-12 17:28:52,902 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 13:29:59] 2025-10-12 17:28:52,926 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:29:59] 2025-10-12 17:28:52,926 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:29:59] 2025-10-12 17:28:52,926 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:29:59] 2025-10-12 17:28:52,926 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:29:59] 2025-10-12 17:28:52,926 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:29:59] 2025-10-12 17:28:52,927 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:29:59] 2025-10-12 17:28:52,927 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:29:59] 2025-10-12 17:28:52,927 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:29:59] 2025-10-12 17:28:52,927 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:29:59] 2025-10-12 17:28:52,927 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:29:59] 2025-10-12 17:28:52,927 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:29:59] 2025-10-12 17:28:52,928 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:29:59] 2025-10-12 17:28:52,928 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:29:59] 2025-10-12 17:28:52,928 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:29:59] 2025-10-12 17:28:52,928 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:29:59] 2025-10-12 17:28:52,928 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:29:59] 2025-10-12 17:28:52,928 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:29:59] 2025-10-12 17:28:52,928 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:29:59] 2025-10-12 17:28:52,929 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:29:59] 2025-10-12 17:28:52,929 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:29:59] 2025-10-12 17:28:52,929 | INFO     | job 6839870911 has completed (purged errors)
[2025-10-12 13:29:59] 2025-10-12 17:28:52,929 | INFO     | overall cleanup function is called
[2025-10-12 13:29:59] 2025-10-12 17:28:53,937 | INFO     | --- collectZombieJob: --- 10, [11803]
[2025-10-12 13:29:59] 2025-10-12 17:28:53,938 | INFO     | zombie collector waiting for pid 11803
[2025-10-12 13:29:59] 2025-10-12 17:28:53,938 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:29:59] 2025-10-12 17:28:53,938 | INFO     | collected zombie processes
[2025-10-12 13:29:59] 2025-10-12 17:28:53,938 | INFO     | will attempt to kill all subprocesses of pid=11803
[2025-10-12 13:29:59] 2025-10-12 17:28:54,025 | INFO     | process IDs to be killed: [11803] (in reverse order)
[2025-10-12 13:29:59] 2025-10-12 17:28:54,073 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:29:59] 2025-10-12 17:28:54,073 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:29:59] 2025-10-12 17:28:54,077 | INFO     | did not find any defunct processes belonging to 11803
[2025-10-12 13:29:59] 2025-10-12 17:28:54,080 | INFO     | did not find any defunct processes belonging to 11803
[2025-10-12 13:29:59] 2025-10-12 17:28:54,081 | INFO     | ready for new job
[2025-10-12 13:29:59] 2025-10-12 17:28:54,081 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:29:59] 2025-10-12 17:28:54,083 | INFO     | ***************************************
[2025-10-12 13:29:59] 2025-10-12 17:28:54,083 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:29:59] 2025-10-12 17:28:54,083 | INFO     | ***************************************
[2025-10-12 13:29:59] 2025-10-12 17:28:54,083 | INFO     | 
[2025-10-12 13:29:59] 2025-10-12 17:28:54,084 | INFO     | architecture information:
[2025-10-12 13:29:59] 2025-10-12 17:28:54,084 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:29:59] 2025-10-12 17:28:54,099 | INFO     | cat /etc/os-release:
[2025-10-12 13:29:59] NAME="CentOS Linux"
[2025-10-12 13:29:59] VERSION="7 (Core)"
[2025-10-12 13:29:59] ID="centos"
[2025-10-12 13:29:59] ID_LIKE="rhel fedora"
[2025-10-12 13:29:59] VERSION_ID="7"
[2025-10-12 13:29:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:29:59] ANSI_COLOR="0;31"
[2025-10-12 13:29:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:29:59] HOME_URL="https://www.centos.org/"
[2025-10-12 13:29:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:29:59] 
[2025-10-12 13:29:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:29:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:29:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:29:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:29:59] 
[2025-10-12 13:29:59] 2025-10-12 17:28:54,099 | INFO     | ***************************************
[2025-10-12 13:29:59] 2025-10-12 17:28:54,602 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 13:29:59] 2025-10-12 17:28:54,620 | INFO     | sufficient remaining disk space (18704498688 B)
[2025-10-12 13:29:59] 2025-10-12 17:28:54,620 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:29:59] 2025-10-12 17:28:54,621 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:29:59] 2025-10-12 17:28:54,621 | INFO     | update_server=False
[2025-10-12 13:29:59] 2025-10-12 17:28:54,621 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:29:59] 2025-10-12 17:28:54,621 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:29:59] 2025-10-12 17:28:54,662 | INFO     | all data control threads have been joined
[2025-10-12 13:29:59] 2025-10-12 17:28:54,732 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:29:59] 2025-10-12 17:28:54,780 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 13:29:59] 2025-10-12 17:28:54,780 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 13:29:59] 2025-10-12 17:28:54,780 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:29:59] 2025-10-12 17:28:54,780 | INFO     | will abort loop
[2025-10-12 13:29:59] 2025-10-12 17:28:55,452 | INFO     | all payload control threads have been joined
[2025-10-12 13:29:59] 2025-10-12 17:28:55,480 | INFO     | all job control threads have been joined
[2025-10-12 13:29:59] 2025-10-12 17:28:55,627 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:29:59] 2025-10-12 17:28:55,627 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:29:59] 2025-10-12 17:28:55,668 | INFO     | [data] control thread has finished
[2025-10-12 13:29:59] 2025-10-12 17:28:55,782 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:29:59] 2025-10-12 17:28:55,971 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:29:59] 2025-10-12 17:28:55,976 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:29:59] 2025-10-12 17:28:56,002 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:29:59] 2025-10-12 17:28:56,256 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:29:59] 2025-10-12 17:28:56,382 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:29:59] 2025-10-12 17:28:56,458 | INFO     | [payload] control thread has finished
[2025-10-12 13:29:59] 2025-10-12 17:28:56,485 | INFO     | [job] control thread has finished
[2025-10-12 13:29:59] 2025-10-12 17:28:56,707 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:29:59] 2025-10-12 17:28:56,738 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:29:59] 2025-10-12 17:28:56,982 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:29:59] 2025-10-12 17:28:56,999 | INFO     | [job] validate thread has finished
[2025-10-12 13:29:59] 2025-10-12 17:28:57,074 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:29:59] 2025-10-12 17:29:00,262 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:29:59] 2025-10-12 17:29:24,757 | INFO     | PID=5304 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 13:29:59] 2025-10-12 17:29:24,757 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:29:59] 2025-10-12 17:29:24,757 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:29:59] 2025-10-12 17:29:24,757 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:29:59] 2025-10-12 17:29:52,742 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:29:59] 2025-10-12 17:29:54,009 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140386975729472)>', '<ExcThread(monitor, started 140386542532352)>']
[2025-10-12 13:29:59] 2025-10-12 17:29:54,877 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:29:59] 2025-10-12 17:29:54,877 | INFO     | [monitor] control thread has ended
[2025-10-12 13:29:59] 2025-10-12 17:29:59,035 | INFO     | all workflow threads have been joined
[2025-10-12 13:29:59] 2025-10-12 17:29:59,035 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:29:59] 2025-10-12 17:29:59,035 | INFO     | traces error code: 0
[2025-10-12 13:29:59] 2025-10-12 17:29:59,036 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:29:59] 2025-10-12 17:29:59,131 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:29:59] 2025-10-12 17:29:59,134 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:29:59] 2025-10-12 17:29:59,138 [wrapper] pilotpid: 5304
[2025-10-12 13:29:59] 2025-10-12 17:29:59,142 [wrapper] Pilot exit status: 0
[2025-10-12 13:29:59] 2025-10-12 17:29:59,158 [wrapper] pandaids: 6839870911
[2025-10-12 13:29:59] 2025-10-12 17:29:59,202 [wrapper] cleanup supervisor_pilot  9889 5305
[2025-10-12 13:29:59] 2025-10-12 17:29:59,206 [wrapper] Test setup, not cleaning
[2025-10-12 13:29:59] 2025-10-12 17:29:59,210 [wrapper] apfmon messages muted
[2025-10-12 13:29:59] 2025-10-12 17:29:59,213 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:29:59] 2025-10-12 17:29:59,217 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:29:59]  *** Error codes and diagnostics ***
[2025-10-12 13:29:59]     "exeErrorCode": 0,
[2025-10-12 13:29:59]     "exeErrorDiag": "",
[2025-10-12 13:29:59]     "pilotErrorCode": 0,
[2025-10-12 13:29:59]     "pilotErrorDiag": "",
[2025-10-12 13:29:59]  *** Listing of results directory ***
[2025-10-12 13:29:59] total 413088
[2025-10-12 13:29:59] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 07:23 pilot3.tar.gz
[2025-10-12 13:29:59] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 07:27 queuedata.json
[2025-10-12 13:29:59] -rwx------ 1 boincer umatlas     36292 Oct 12 07:28 runpilot2-wrapper.sh
[2025-10-12 13:29:59] -rw-r--r-- 1 boincer umatlas       100 Oct 12 12:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:29:59] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 12:23 run_atlas
[2025-10-12 13:29:59] -rw-r--r-- 1 boincer umatlas       105 Oct 12 12:23 job.xml
[2025-10-12 13:29:59] -rw-r--r-- 2 boincer umatlas 219091866 Oct 12 12:23 EVNT.46676267._003680.pool.root.1
[2025-10-12 13:29:59] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:23 start_atlas.sh
[2025-10-12 13:29:59] drwxrwx--x 2 boincer umatlas      4096 Oct 12 12:23 shared
[2025-10-12 13:29:59] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 12:23 input.tar.gz
[2025-10-12 13:29:59] -rw-r--r-- 1 boincer umatlas         0 Oct 12 12:23 boinc_lockfile
[2025-10-12 13:29:59] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 12:23 pandaJob.out
[2025-10-12 13:29:59] -rw------- 1 boincer umatlas    975528 Oct 12 12:23 agis_schedconf.cvmfs.json
[2025-10-12 13:29:59] -rw------- 1 boincer umatlas   1560580 Oct 12 12:23 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:29:59] drwx------ 5 boincer umatlas      4096 Oct 12 12:23 pilot3
[2025-10-12 13:29:59] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 13:27 init_data.xml
[2025-10-12 13:29:59] -rw------- 1 boincer umatlas 198103063 Oct 12 13:28 HITS.46676269._077148.pool.root.1
[2025-10-12 13:29:59] -rw-r--r-- 1 boincer umatlas       529 Oct 12 13:28 boinc_task_state.xml
[2025-10-12 13:29:59] -rw------- 1 boincer umatlas        95 Oct 12 13:28 pilot_heartbeat.json
[2025-10-12 13:29:59] -rw------- 1 boincer umatlas      1047 Oct 12 13:28 memory_monitor_summary.json
[2025-10-12 13:29:59] -rw------- 1 boincer umatlas    373059 Oct 12 13:28 log.46676269._077148.job.log.tgz.1
[2025-10-12 13:29:59] -rw------- 1 boincer umatlas      7846 Oct 12 13:28 heartbeat.json
[2025-10-12 13:29:59] -rw-r--r-- 1 boincer umatlas        27 Oct 12 13:29 wrapper_checkpoint.txt
[2025-10-12 13:29:59] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 13:29 boinc_mmap_file
[2025-10-12 13:29:59] -rw------- 1 boincer umatlas      4931 Oct 12 13:29 pilotlog.txt
[2025-10-12 13:29:59] -rw------- 1 boincer umatlas    576452 Oct 12 13:29 log.46676269._077148.job.log.1
[2025-10-12 13:29:59] -rw------- 1 boincer umatlas       357 Oct 12 13:29 output.list
[2025-10-12 13:29:59] -rw-r--r-- 1 boincer umatlas       620 Oct 12 13:29 runtime_log
[2025-10-12 13:29:59] -rw------- 1 boincer umatlas    972800 Oct 12 13:29 result.tar.gz
[2025-10-12 13:29:59] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 13:29 runtime_log.err
[2025-10-12 13:29:59] -rw------- 1 boincer umatlas       659 Oct 12 13:29 quIODm8Q9R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmKlTMDmJfbK8m.diag
[2025-10-12 13:29:59] -rw-r--r-- 1 boincer umatlas     22378 Oct 12 13:29 stderr.txt
[2025-10-12 13:29:59] HITS file was successfully produced:
[2025-10-12 13:29:59] -rw------- 1 boincer umatlas 198103063 Oct 12 13:28 shared/HITS.pool.root.1
[2025-10-12 13:29:59]  *** Contents of shared directory: ***
[2025-10-12 13:29:59] total 408952
[2025-10-12 13:29:59] -rw-r--r-- 2 boincer umatlas 219091866 Oct 12 12:23 ATLAS.root_0
[2025-10-12 13:29:59] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:23 start_atlas.sh
[2025-10-12 13:29:59] -rw-r--r-- 2 boincer umatlas    569684 Oct 12 12:23 input.tar.gz
[2025-10-12 13:29:59] -rw------- 1 boincer umatlas 198103063 Oct 12 13:28 HITS.pool.root.1
[2025-10-12 13:29:59] -rw------- 1 boincer umatlas    972800 Oct 12 13:29 result.tar.gz
13:30:01 (1434): run_atlas exited; CPU time 41943.015982
13:30:01 (1434): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN