Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:58:17 (3875205): wrapper (7.7.26015): starting
12:58:17 (3875205): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 12:58:17] Arguments: --nthreads 8
[2025-10-12 12:58:17] Threads: 8
[2025-10-12 12:58:17] Checking for CVMFS
[2025-10-12 12:58:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:58:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:58:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:58:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:58:19] 2.13.2.0 79137 135173 627128 151627 1 729 28527552 40960001 73657 16776704 0 466673945 99.816 221420062 32305 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 12:58:19] CVMFS is ok
[2025-10-12 12:58:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:58:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:58:19] Further information can be found at the LHC@home message board.
[2025-10-12 12:58:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:58:19] Checking for apptainer binary...
[2025-10-12 12:58:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:58:19] Running /usr/bin/apptainer --version
[2025-10-12 12:58:19] apptainer version 1.4.3-1.el9
[2025-10-12 12:58:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:58:20] c8-7-6.aglt2.org
[2025-10-12 12:58:20] apptainer works
[2025-10-12 12:58:20] Set ATHENA_PROC_NUMBER=8
[2025-10-12 12:58:20] Set ATHENA_CORE_NUMBER=8
[2025-10-12 12:58:20] Starting ATLAS job with PandaID=6839990018
[2025-10-12 12:58:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 14:41:05]  *** The last 200 lines of the pilot log: ***
[2025-10-12 14:41:05] 2025-10-12 18:39:54,319 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 14:41:05] 2025-10-12 18:39:54,545 | INFO     | time since job start (6008s) is within the limit (172800.0s)
[2025-10-12 14:41:05] 2025-10-12 18:39:56,552 | INFO     | time since job start (6010s) is within the limit (172800.0s)
[2025-10-12 14:41:05] 2025-10-12 18:39:57,206 | WARNING  | process 3910096 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 14:41:05] 2025-10-12 18:39:57,207 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6839990018/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 14:41:05] 2025-10-12 18:39:57,211 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6839990018/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 14:41:05] 2025-10-12 18:39:57,211 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 14:41:05] 2025-10-12 18:39:57,211 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 14:41:05] 2025-10-12 18:39:57,212 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3579180 B
[2025-10-12 14:41:05] 2025-10-12 18:39:57,212 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15783 B
[2025-10-12 14:41:05] 2025-10-12 18:39:57,212 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-10-12 14:41:05] 2025-10-12 18:39:58,559 | INFO     | time since job start (6012s) is within the limit (172800.0s)
[2025-10-12 14:41:05] 2025-10-12 18:40:00,583 | INFO     | time since job start (6014s) is within the limit (172800.0s)
[2025-10-12 14:41:05] 2025-10-12 18:40:02,590 | INFO     | time since job start (6016s) is within the limit (172800.0s)
[2025-10-12 14:41:05] 2025-10-12 18:40:04,610 | INFO     | time since job start (6018s) is within the limit (172800.0s)
[2025-10-12 14:41:05] 2025-10-12 18:40:06,617 | INFO     | time since job start (6020s) is within the limit (172800.0s)
[2025-10-12 14:41:05] 2025-10-12 18:40:08,630 | INFO     | time since job start (6022s) is within the limit (172800.0s)
[2025-10-12 14:41:05] 2025-10-12 18:40:13,234 | INFO     | PID=3884946 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 14:41:05] 2025-10-12 18:40:13,234 | INFO     | .. there are 101 such processes running
[2025-10-12 14:41:05] 2025-10-12 18:40:14,235 | INFO     | time since job start (6028s) is within the limit (172800.0s)
[2025-10-12 14:41:05] 2025-10-12 18:40:16,242 | INFO     | time since job start (6030s) is within the limit (172800.0s)
[2025-10-12 14:41:05] 2025-10-12 18:40:18,249 | INFO     | time since job start (6032s) is within the limit (172800.0s)
[2025-10-12 14:41:05] 2025-10-12 18:40:20,256 | INFO     | time since job start (6034s) is within the limit (172800.0s)
[2025-10-12 14:41:05] 2025-10-12 18:40:22,263 | INFO     | time since job start (6036s) is within the limit (172800.0s)
[2025-10-12 14:41:05] 2025-10-12 18:40:24,269 | INFO     | time since job start (6038s) is within the limit (172800.0s)
[2025-10-12 14:41:05] 2025-10-12 18:40:26,276 | INFO     | time since job start (6040s) is within the limit (172800.0s)
[2025-10-12 14:41:05] 2025-10-12 18:40:27,705 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 14:41:05] 2025-10-12 18:40:27,734 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.1361484374975
[2025-10-12 14:41:05] 2025-10-12 18:40:27,771 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6839990018/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 14:41:05] 2025-10-12 18:40:27,772 | INFO     | extracted standard info from prmon json
[2025-10-12 14:41:05] 2025-10-12 18:40:27,772 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 14:41:05] 2025-10-12 18:40:27,772 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 14:41:05] 2025-10-12 18:40:27,772 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 14:41:05] 2025-10-12 18:40:27,772 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 14:41:05] 2025-10-12 18:40:27,774 | INFO     | fitting pss+swap vs Time
[2025-10-12 14:41:05] 2025-10-12 18:40:27,778 | INFO     | sum of square deviations: 218559957.280899
[2025-10-12 14:41:05] 2025-10-12 18:40:27,778 | INFO     | sum of deviations: 3032614716.11236
[2025-10-12 14:41:05] 2025-10-12 18:40:27,778 | INFO     | mean x: 1760291551.0898876
[2025-10-12 14:41:05] 2025-10-12 18:40:27,778 | INFO     | mean y: 2264269.2359550563
[2025-10-12 14:41:05] 2025-10-12 18:40:27,778 | INFO     | -- intersect: -24422548623.743065
[2025-10-12 14:41:05] 2025-10-12 18:40:27,778 | INFO     | intersect: -24422548623.743065
[2025-10-12 14:41:05] 2025-10-12 18:40:27,779 | INFO     | chi2: 0.1815651277294156
[2025-10-12 14:41:05] 2025-10-12 18:40:27,779 | INFO     | -- intersect: -24422548623.743065
[2025-10-12 14:41:05] 2025-10-12 18:40:27,794 | INFO     | current memory leak: 13.88 B/s (using 89 data points, chi2=0.18)
[2025-10-12 14:41:05] 2025-10-12 18:40:27,794 | INFO     | could have reported an average CPU frequency of 3798 MHz (7 samples)
[2025-10-12 14:41:05] 2025-10-12 18:40:27,795 | INFO     | ..............................
[2025-10-12 14:41:05] 2025-10-12 18:40:27,795 | INFO     | . Timing measurements:
[2025-10-12 14:41:05] 2025-10-12 18:40:27,795 | INFO     | . get job = 0 s
[2025-10-12 14:41:05] 2025-10-12 18:40:27,795 | INFO     | . initial setup = 8 s
[2025-10-12 14:41:05] 2025-10-12 18:40:27,795 | INFO     | . payload setup = 54 s
[2025-10-12 14:41:05] 2025-10-12 18:40:27,795 | INFO     | . stage-in = 0 s
[2025-10-12 14:41:05] 2025-10-12 18:40:27,795 | INFO     | . payload execution = 5864 s
[2025-10-12 14:41:05] 2025-10-12 18:40:27,795 | INFO     | . stage-out = 1 s
[2025-10-12 14:41:05] 2025-10-12 18:40:27,795 | INFO     | . log creation = 0 s
[2025-10-12 14:41:05] 2025-10-12 18:40:27,795 | INFO     | ..............................
[2025-10-12 14:41:05] 2025-10-12 18:40:27,815 | INFO     | sufficient remaining disk space (169254846464 B)
[2025-10-12 14:41:05] 2025-10-12 18:40:27,815 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 14:41:05] 2025-10-12 18:40:27,816 | INFO     | size of work directory /tmp/boinchome/slots/7/PanDA_Pilot-6839990018: 3885941 B (within 2537553920 B limit)
[2025-10-12 14:41:05] 2025-10-12 18:40:27,816 | INFO     | pfn file=/tmp/boinchome/slots/7/PanDA_Pilot-6839990018/HITS.46676269._079176.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 14:41:05] 2025-10-12 18:40:27,816 | INFO     | total size of present files: 0 B (workdir size: 3885941 B)
[2025-10-12 14:41:05] 2025-10-12 18:40:27,816 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/7/PanDA_Pilot-6839990018/HITS.46676269._079176.pool.root.1 since it does not exist
[2025-10-12 14:41:05] 2025-10-12 18:40:27,924 | INFO     | 
[2025-10-12 14:41:05] 2025-10-12 18:40:27,925 | INFO     | job summary report
[2025-10-12 14:41:05] 2025-10-12 18:40:27,925 | INFO     | --------------------------------------------------
[2025-10-12 14:41:05] 2025-10-12 18:40:27,925 | INFO     | PanDA job id: 6839990018
[2025-10-12 14:41:05] 2025-10-12 18:40:27,925 | INFO     | task id: 46676269
[2025-10-12 14:41:05] 2025-10-12 18:40:27,925 | INFO     | errors: (none)
[2025-10-12 14:41:05] 2025-10-12 18:40:27,925 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 14:41:05] 2025-10-12 18:40:27,925 | INFO     | pilot state: finished 
[2025-10-12 14:41:05] 2025-10-12 18:40:27,925 | INFO     | transexitcode: 0
[2025-10-12 14:41:05] 2025-10-12 18:40:27,925 | INFO     | exeerrorcode: 0
[2025-10-12 14:41:05] 2025-10-12 18:40:27,925 | INFO     | exeerrordiag: 
[2025-10-12 14:41:05] 2025-10-12 18:40:27,925 | INFO     | exitcode: 0
[2025-10-12 14:41:05] 2025-10-12 18:40:27,926 | INFO     | exitmsg: OK
[2025-10-12 14:41:05] 2025-10-12 18:40:27,926 | INFO     | cpuconsumptiontime: 22028 s
[2025-10-12 14:41:05] 2025-10-12 18:40:27,926 | INFO     | nevents: 400
[2025-10-12 14:41:05] 2025-10-12 18:40:27,926 | INFO     | neventsw: 0
[2025-10-12 14:41:05] 2025-10-12 18:40:27,926 | INFO     | pid: 3910096
[2025-10-12 14:41:05] 2025-10-12 18:40:27,926 | INFO     | pgrp: 3910096
[2025-10-12 14:41:05] 2025-10-12 18:40:27,926 | INFO     | corecount: 8
[2025-10-12 14:41:05] 2025-10-12 18:40:27,926 | INFO     | event service: False
[2025-10-12 14:41:05] 2025-10-12 18:40:27,926 | INFO     | sizes: {0: 2348630, 1: 2348885, 12: 2348885, 23: 2348913, 34: 2348941, 36: 2349231, 45: 2349387, 5924: 2375977, 5925: 2375976, 5927: 2385030, 5928: 2385086, 5962: 
[2025-10-12 14:41:05] 2025-10-12 18:40:27,926 | INFO     | --------------------------------------------------
[2025-10-12 14:41:05] 2025-10-12 18:40:27,926 | INFO     | 
[2025-10-12 14:41:05] 2025-10-12 18:40:27,926 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-10-12 14:41:05] 2025-10-12 18:40:28,090 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 14:41:05] 2025-10-12 18:40:28,090 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | job 6839990018 has completed (purged errors)
[2025-10-12 14:41:05] 2025-10-12 18:40:28,091 | INFO     | overall cleanup function is called
[2025-10-12 14:41:05] 2025-10-12 18:40:29,107 | INFO     | --- collectZombieJob: --- 10, [3910096]
[2025-10-12 14:41:05] 2025-10-12 18:40:29,107 | INFO     | zombie collector waiting for pid 3910096
[2025-10-12 14:41:05] 2025-10-12 18:40:29,107 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 14:41:05] 2025-10-12 18:40:29,108 | INFO     | collected zombie processes
[2025-10-12 14:41:05] 2025-10-12 18:40:29,108 | INFO     | will attempt to kill all subprocesses of pid=3910096
[2025-10-12 14:41:05] 2025-10-12 18:40:29,847 | INFO     | number of running child processes to parent process 3910096: 1
[2025-10-12 14:41:05] 2025-10-12 18:40:29,847 | INFO     | maximum number of monitored processes: 6
[2025-10-12 14:41:05] 2025-10-12 18:40:29,847 | INFO     | aborting job monitoring since job object (job id=6839990018) has expired
[2025-10-12 14:41:05] 2025-10-12 18:40:31,457 | INFO     | process IDs to be killed: [3910096] (in reverse order)
[2025-10-12 14:41:05] 2025-10-12 18:40:31,896 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 14:41:05] 2025-10-12 18:40:31,896 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 14:41:05] 2025-10-12 18:40:32,247 | INFO     | did not find any defunct processes belonging to 3910096
[2025-10-12 14:41:05] 2025-10-12 18:40:32,404 | INFO     | did not find any defunct processes belonging to 3910096
[2025-10-12 14:41:05] 2025-10-12 18:40:32,405 | INFO     | ready for new job
[2025-10-12 14:41:05] 2025-10-12 18:40:32,405 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 14:41:05] 2025-10-12 18:40:32,410 | INFO     | ***************************************
[2025-10-12 14:41:05] 2025-10-12 18:40:32,410 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 14:41:05] 2025-10-12 18:40:32,410 | INFO     | ***************************************
[2025-10-12 14:41:05] 2025-10-12 18:40:32,410 | INFO     | 
[2025-10-12 14:41:05] 2025-10-12 18:40:32,434 | INFO     | architecture information:
[2025-10-12 14:41:05] 2025-10-12 18:40:32,434 | INFO     | executing command: cat /etc/os-release
[2025-10-12 14:41:05] 2025-10-12 18:40:32,531 | INFO     | cat /etc/os-release:
[2025-10-12 14:41:05] NAME="CentOS Linux"
[2025-10-12 14:41:05] VERSION="7 (Core)"
[2025-10-12 14:41:05] ID="centos"
[2025-10-12 14:41:05] ID_LIKE="rhel fedora"
[2025-10-12 14:41:05] VERSION_ID="7"
[2025-10-12 14:41:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 14:41:05] ANSI_COLOR="0;31"
[2025-10-12 14:41:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 14:41:05] HOME_URL="https://www.centos.org/"
[2025-10-12 14:41:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 14:41:05] 
[2025-10-12 14:41:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 14:41:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 14:41:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 14:41:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 14:41:05] 
[2025-10-12 14:41:05] 2025-10-12 18:40:32,531 | INFO     | ***************************************
[2025-10-12 14:41:05] 2025-10-12 18:40:33,034 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-10-12 14:41:05] 2025-10-12 18:40:33,099 | INFO     | sufficient remaining disk space (169259040768 B)
[2025-10-12 14:41:05] 2025-10-12 18:40:33,099 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 14:41:05] 2025-10-12 18:40:33,100 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 14:41:05] 2025-10-12 18:40:33,100 | INFO     | update_server=False
[2025-10-12 14:41:05] 2025-10-12 18:40:33,100 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 14:41:05] 2025-10-12 18:40:33,117 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:41:05] 2025-10-12 18:40:33,202 | INFO     | all payload control threads have been joined
[2025-10-12 14:41:05] 2025-10-12 18:40:33,384 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:41:05] 2025-10-12 18:40:33,384 | INFO     | aborting loop
[2025-10-12 14:41:05] 2025-10-12 18:40:33,438 | INFO     | all data control threads have been joined
[2025-10-12 14:41:05] 2025-10-12 18:40:33,735 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 14:41:05] 2025-10-12 18:40:34,106 | INFO     | [job] retrieve thread has finished
[2025-10-12 14:41:05] 2025-10-12 18:40:34,126 | INFO     | [job] queue monitor thread has finished
[2025-10-12 14:41:05] 2025-10-12 18:40:34,176 | INFO     | [data] copytool_in thread has finished
[2025-10-12 14:41:05] 2025-10-12 18:40:34,208 | INFO     | [payload] control thread has finished
[2025-10-12 14:41:05] 2025-10-12 18:40:34,371 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 14:41:05] 2025-10-12 18:40:34,390 | INFO     | [job] job monitor thread has finished
[2025-10-12 14:41:05] 2025-10-12 18:40:34,445 | INFO     | [data] control thread has finished
[2025-10-12 14:41:05] 2025-10-12 18:40:34,519 | INFO     | [payload] failed_post thread has finished
[2025-10-12 14:41:05] 2025-10-12 18:40:34,669 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 14:41:05] 2025-10-12 18:40:34,732 | INFO     | all job control threads have been joined
[2025-10-12 14:41:05] 2025-10-12 18:40:34,994 | INFO     | [job] validate thread has finished
[2025-10-12 14:41:05] 2025-10-12 18:40:35,146 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 14:41:05] 2025-10-12 18:40:35,224 | INFO     | [payload] validate_post thread has finished
[2025-10-12 14:41:05] 2025-10-12 18:40:35,742 | INFO     | [data] copytool_out thread has finished
[2025-10-12 14:41:05] 2025-10-12 18:40:35,745 | INFO     | [job] control thread has finished
[2025-10-12 14:41:05] 2025-10-12 18:40:35,993 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 14:41:05] 2025-10-12 18:40:40,056 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 14:41:05] 2025-10-12 18:40:43,318 | INFO     | job.realtimelogging is not enabled
[2025-10-12 14:41:05] 2025-10-12 18:40:44,324 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 14:41:05] 2025-10-12 18:40:55,688 | INFO     | [monitor] cgroup control has ended
[2025-10-12 14:41:05] 2025-10-12 18:40:57,123 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140335984195392)>', '<ExcThread(monitor, started 140335481079552)>']
[2025-10-12 14:41:05] 2025-10-12 18:41:01,153 | INFO     | PID=3884946 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 14:41:05] 2025-10-12 18:41:01,153 | INFO     | .. there are 101 such processes running
[2025-10-12 14:41:05] 2025-10-12 18:41:01,154 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 14:41:05] 2025-10-12 18:41:01,154 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 14:41:05] 2025-10-12 18:41:01,154 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 14:41:05] 2025-10-12 18:41:01,154 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 14:41:05] 2025-10-12 18:41:01,154 | INFO     | [monitor] control thread has ended
[2025-10-12 14:41:05] 2025-10-12 18:41:02,151 | INFO     | all workflow threads have been joined
[2025-10-12 14:41:05] 2025-10-12 18:41:02,151 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 14:41:05] 2025-10-12 18:41:02,151 | INFO     | traces error code: 0
[2025-10-12 14:41:05] 2025-10-12 18:41:02,151 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 14:41:05] 2025-10-12 18:41:02,317 [wrapper] ==== pilot stdout END ====
[2025-10-12 14:41:05] 2025-10-12 18:41:02,395 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 14:41:05] 2025-10-12 18:41:02,479 [wrapper] pilotpid: 3884946
[2025-10-12 14:41:05] 2025-10-12 18:41:02,552 [wrapper] Pilot exit status: 0
[2025-10-12 14:41:05] 2025-10-12 18:41:02,881 [wrapper] pandaids: 6839990018
[2025-10-12 14:41:05] 2025-10-12 18:41:04,003 [wrapper] cleanup supervisor_pilot  757777 3884948
[2025-10-12 14:41:05] 2025-10-12 18:41:04,032 [wrapper] Test setup, not cleaning
[2025-10-12 14:41:05] 2025-10-12 18:41:04,077 [wrapper] apfmon messages muted
[2025-10-12 14:41:05] 2025-10-12 18:41:04,097 [wrapper] ==== wrapper stdout END ====
[2025-10-12 14:41:05] 2025-10-12 18:41:04,326 [wrapper] ==== wrapper stderr END ====
[2025-10-12 14:41:05]  *** Error codes and diagnostics ***
[2025-10-12 14:41:05]     "exeErrorCode": 0,
[2025-10-12 14:41:05]     "exeErrorDiag": "",
[2025-10-12 14:41:05]     "pilotErrorCode": 0,
[2025-10-12 14:41:05]     "pilotErrorDiag": "",
[2025-10-12 14:41:05]  *** Listing of results directory ***
[2025-10-12 14:41:05] total 405132
[2025-10-12 14:41:05] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 09:05 pilot3.tar.gz
[2025-10-12 14:41:05] -rwx------. 1 boincer umatlas     36292 Oct 12 09:08 runpilot2-wrapper.sh
[2025-10-12 14:41:05] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 09:08 queuedata.json
[2025-10-12 14:41:05] -rw-r--r--. 1 boincer umatlas       100 Oct 12 12:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 14:41:05] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 12:58 run_atlas
[2025-10-12 14:41:05] -rw-r--r--. 1 boincer umatlas       105 Oct 12 12:58 job.xml
[2025-10-12 14:41:05] -rw-r--r--. 2 boincer umatlas 218910766 Oct 12 12:58 EVNT.46676267._003854.pool.root.1
[2025-10-12 14:41:05] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 12:58 start_atlas.sh
[2025-10-12 14:41:05] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 12:58 shared
[2025-10-12 14:41:05] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 12:58 input.tar.gz
[2025-10-12 14:41:05] -rw-r--r--. 1 boincer umatlas         0 Oct 12 12:58 boinc_lockfile
[2025-10-12 14:41:05] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 12:58 pandaJob.out
[2025-10-12 14:41:05] -rw-------. 1 boincer umatlas    975528 Oct 12 12:59 agis_schedconf.cvmfs.json
[2025-10-12 14:41:05] -rw-------. 1 boincer umatlas   1560580 Oct 12 12:59 agis_ddmendpoints.agis.ALL.json
[2025-10-12 14:41:05] drwx------. 5 boincer umatlas      4096 Oct 12 12:59 pilot3
[2025-10-12 14:41:05] -rw-r--r--. 1 boincer umatlas      7161 Oct 12 14:37 init_data.xml
[2025-10-12 14:41:05] -rw-------. 1 boincer umatlas 189827604 Oct 12 14:39 HITS.46676269._079176.pool.root.1
[2025-10-12 14:41:05] -rw-r--r--. 1 boincer umatlas       529 Oct 12 14:39 boinc_task_state.xml
[2025-10-12 14:41:05] -rw-------. 1 boincer umatlas      1037 Oct 12 14:39 memory_monitor_summary.json
[2025-10-12 14:41:05] -rw-------. 1 boincer umatlas    345231 Oct 12 14:39 log.46676269._079176.job.log.tgz.1
[2025-10-12 14:41:05] -rw-------. 1 boincer umatlas      7779 Oct 12 14:40 heartbeat.json
[2025-10-12 14:41:05] -rw-------. 1 boincer umatlas        95 Oct 12 14:41 pilot_heartbeat.json
[2025-10-12 14:41:05] -rw-------. 1 boincer umatlas      4898 Oct 12 14:41 pilotlog.txt
[2025-10-12 14:41:05] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 14:41 boinc_mmap_file
[2025-10-12 14:41:05] -rw-r--r--. 1 boincer umatlas        27 Oct 12 14:41 wrapper_checkpoint.txt
[2025-10-12 14:41:05] -rw-------. 1 boincer umatlas    757714 Oct 12 14:41 log.46676269._079176.job.log.1
[2025-10-12 14:41:05] -rw-------. 1 boincer umatlas       357 Oct 12 14:41 output.list
[2025-10-12 14:41:05] -rw-r--r--. 1 boincer umatlas       620 Oct 12 14:41 runtime_log
[2025-10-12 14:41:05] -rw-------. 1 boincer umatlas   1126400 Oct 12 14:41 result.tar.gz
[2025-10-12 14:41:05] -rw-r--r--. 1 boincer umatlas      8693 Oct 12 14:41 runtime_log.err
[2025-10-12 14:41:05] -rw-------. 1 boincer umatlas       650 Oct 12 14:41 DrJMDmOzAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhxjNDmpVv63n.diag
[2025-10-12 14:41:05] -rw-r--r--. 1 boincer umatlas     22387 Oct 12 14:41 stderr.txt
[2025-10-12 14:41:05] HITS file was successfully produced:
[2025-10-12 14:41:05] -rw-------. 1 boincer umatlas 189827604 Oct 12 14:39 shared/HITS.pool.root.1
[2025-10-12 14:41:05]  *** Contents of shared directory: ***
[2025-10-12 14:41:05] total 400848
[2025-10-12 14:41:05] -rw-r--r--. 2 boincer umatlas 218910766 Oct 12 12:58 ATLAS.root_0
[2025-10-12 14:41:05] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 12:58 start_atlas.sh
[2025-10-12 14:41:05] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 12:58 input.tar.gz
[2025-10-12 14:41:05] -rw-------. 1 boincer umatlas 189827604 Oct 12 14:39 HITS.pool.root.1
[2025-10-12 14:41:05] -rw-------. 1 boincer umatlas   1126400 Oct 12 14:41 result.tar.gz
14:41:06 (3875205): run_atlas exited; CPU time 22215.416314
14:41:06 (3875205): called boinc_finish(0)

</stderr_txt>
]]>

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