Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:26:22 (462405): wrapper (7.7.26015): starting
09:26:22 (462405): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 09:26:22] Arguments: --nthreads 8
[2025-10-12 09:26:22] Threads: 8
[2025-10-12 09:26:22] Checking for CVMFS
[2025-10-12 09:26:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 09:26:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 09:26:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 09:26:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 09:26:24] 2.11.3.0 2018 31685 213152 151625 1 557 42780408 45568001 9945 130560 0 189326621 99.860 75928046 14572 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-12 09:26:24] CVMFS is ok
[2025-10-12 09:26:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 09:26:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 09:26:24] Further information can be found at the LHC@home message board.
[2025-10-12 09:26:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 09:26:24] Checking for apptainer binary...
[2025-10-12 09:26:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 09:26:24] Running /usr/bin/apptainer --version
[2025-10-12 09:26:24] apptainer version 1.4.1-1.el9
[2025-10-12 09:26:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 09:26:24] wns0002.triumf.lcg
[2025-10-12 09:26:24] apptainer works
[2025-10-12 09:26:24] Set ATHENA_PROC_NUMBER=8
[2025-10-12 09:26:24] Set ATHENA_CORE_NUMBER=8
[2025-10-12 09:26:24] Starting ATLAS job with PandaID=6840223403
[2025-10-12 09:26:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 09:33:31]  *** The last 200 lines of the pilot log: ***
[2025-10-12 09:33:31] 2025-10-12 16:32:57,347 | WARNING  | wrong length of table data, x=[1760286537.0, 1760286598.0], y=[1999.0, 483288.0] (must be same and length>=4)
[2025-10-12 09:33:31] 2025-10-12 16:32:57,347 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-12 09:33:31] 2025-10-12 16:32:57,347 | INFO     | ..............................
[2025-10-12 09:33:31] 2025-10-12 16:32:57,347 | INFO     | . Timing measurements:
[2025-10-12 09:33:31] 2025-10-12 16:32:57,347 | INFO     | . get job = 0 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,347 | INFO     | . initial setup = 7 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | . payload setup = 32 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | . stage-in = 0 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | . payload execution = 119 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | . stage-out = 0 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | . log creation = 0 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | ..............................
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6840223403/pilotlog.txt
[2025-10-12 09:33:31] 2025-10-12 16:32:57,421 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-12 09:33:31] - Log from pilotlog.txt -
[2025-10-12 09:33:31] 2025-10-12 16:32:57,332 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6840223403/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:33:31] 2025-10-12 16:32:57,332 | INFO     | extracted standard info from prmon json
[2025-10-12 09:33:31] 2025-10-12 16:32:57,333 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 09:33:31] 2025-10-12 16:32:57,333 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 09:33:31] 2025-10-12 16:32:57,345 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 09:33:31] 2025-10-12 16:32:57,346 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 09:33:31] 2025-10-12 16:32:57,347 | WARNING  | wrong length of table data, x=[1760286537.0, 1760286598.0], y=[1999.0, 483288.0] (must be same and length>=4)
[2025-10-12 09:33:31] 2025-10-12 16:32:57,347 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-12 09:33:31] 2025-10-12 16:32:57,347 | INFO     | ..............................
[2025-10-12 09:33:31] 2025-10-12 16:32:57,347 | INFO     | . Timing measurements:
[2025-10-12 09:33:31] 2025-10-12 16:32:57,347 | INFO     | . get job = 0 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,347 | INFO     | . initial setup = 7 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | . payload setup = 32 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | . stage-in = 0 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | . payload execution = 119 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | . stage-out = 0 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | . log creation = 0 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | ..............................
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6840223403/pilotlog.txt
[2025-10-12 09:33:31] 2025-10-12 16:32:57,421 | WARNING  | 
[2025-10-12 09:33:31] [begin log extracts]
[2025-10-12 09:33:31] - Log from pilotlog.txt -
[2025-10-12 09:33:31] 2025-10-12 16:32:57,332 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6840223403/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 09:33:31] 2025-10-12 16:32:57,332 | INFO     | extracted standard info from prmon json
[2025-10-12 09:33:31] 2025-10-12 16:32:57,333 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 09:33:31] 2025-10-12 16:32:57,333 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 09:33:31] 2025-10-12 16:32:57,345 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 09:33:31] 2025-10-12 16:32:57,346 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 09:33:31] 2025-10-12 16:32:57,347 | WARNING  | wrong length of table data, x=[1760286537.0, 1760286598.0], y=[1999.0, 483288.0] (must be same and length>=4)
[2025-10-12 09:33:31] 2025-10-12 16:32:57,347 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-12 09:33:31] 2025-10-12 16:32:57,347 | INFO     | ..............................
[2025-10-12 09:33:31] 2025-10-12 16:32:57,347 | INFO     | . Timing measurements:
[2025-10-12 09:33:31] 2025-10-12 16:32:57,347 | INFO     | . get job = 0 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,347 | INFO     | . initial setup = 7 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | . payload setup = 32 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | . stage-in = 0 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | . payload execution = 119 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | . stage-out = 0 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | . log creation = 0 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | ..............................
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 09:33:31] 2025-10-12 16:32:57,367 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6840223403/pilotlog.txt
[2025-10-12 09:33:31] [end log extracts]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,421 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-12 09:33:31] 2025-10-12 16:32:57,422 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-12 09:33:31] 2025-10-12 16:32:57,583 | INFO     | 
[2025-10-12 09:33:31] 2025-10-12 16:32:57,593 | INFO     | job summary report
[2025-10-12 09:33:31] 2025-10-12 16:32:57,593 | INFO     | --------------------------------------------------
[2025-10-12 09:33:31] 2025-10-12 16:32:57,593 | INFO     | PanDA job id: 6840223403
[2025-10-12 09:33:31] 2025-10-12 16:32:57,593 | INFO     | task id: 46676269
[2025-10-12 09:33:31] 2025-10-12 16:32:57,593 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-12 09:30:24,211 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-12 09:33:31] 2025-10-12 16:32:57,593 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 09:33:31] 2025-10-12 16:32:57,594 | INFO     | pilot state: failed 
[2025-10-12 09:33:31] 2025-10-12 16:32:57,594 | INFO     | transexitcode: 65
[2025-10-12 09:33:31] 2025-10-12 16:32:57,594 | INFO     | exeerrorcode: 65
[2025-10-12 09:33:31] 2025-10-12 16:32:57,594 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 09:33:31] 2025-10-12 16:32:57,594 | INFO     | exitcode: 65
[2025-10-12 09:33:31] 2025-10-12 16:32:57,594 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 09:33:31] 2025-10-12 16:32:57,594 | INFO     | cpuconsumptiontime: 19 s
[2025-10-12 09:33:31] 2025-10-12 16:32:57,594 | INFO     | nevents: 0
[2025-10-12 09:33:31] 2025-10-12 16:32:57,594 | INFO     | neventsw: 0
[2025-10-12 09:33:31] 2025-10-12 16:32:57,594 | INFO     | pid: 473351
[2025-10-12 09:33:31] 2025-10-12 16:32:57,594 | INFO     | pgrp: 473351
[2025-10-12 09:33:31] 2025-10-12 16:32:57,594 | INFO     | corecount: 8
[2025-10-12 09:33:31] 2025-10-12 16:32:57,594 | INFO     | event service: False
[2025-10-12 09:33:31] 2025-10-12 16:32:57,594 | INFO     | sizes: {0: 2348526, 1: 2348610, 2: 2348809, 13: 2348809, 23: 2349127, 24: 2349155, 156: 2372620, 157: 2376912, 158: 2376940, 298: 2377106}
[2025-10-12 09:33:31] 2025-10-12 16:32:57,594 | INFO     | --------------------------------------------------
[2025-10-12 09:33:31] 2025-10-12 16:32:57,595 | INFO     | 
[2025-10-12 09:33:31] 2025-10-12 16:32:57,595 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-12 09:33:31] 2025-10-12 16:32:57,684 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,684 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,684 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,685 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,685 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,685 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,685 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,685 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,685 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,685 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,685 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,685 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,685 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,685 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,685 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,685 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,685 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,686 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 09:33:31] 2025-10-12 16:32:57,686 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,686 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 09:33:31] 2025-10-12 16:32:57,686 | INFO     | job 6840223403 has completed (purged errors)
[2025-10-12 09:33:31] 2025-10-12 16:32:57,686 | INFO     | overall cleanup function is called
[2025-10-12 09:33:31] 2025-10-12 16:32:58,636 | INFO     | PID=466458 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 09:33:31] 2025-10-12 16:32:58,636 | INFO     | .. there are 33 such processes running
[2025-10-12 09:33:31] 2025-10-12 16:32:58,693 | INFO     | --- collectZombieJob: --- 10, [473351]
[2025-10-12 09:33:31] 2025-10-12 16:32:58,693 | INFO     | zombie collector waiting for pid 473351
[2025-10-12 09:33:31] 2025-10-12 16:32:58,693 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 09:33:31] 2025-10-12 16:32:58,693 | INFO     | collected zombie processes
[2025-10-12 09:33:31] 2025-10-12 16:32:58,694 | INFO     | will attempt to kill all subprocesses of pid=473351
[2025-10-12 09:33:31] 2025-10-12 16:32:59,569 | INFO     | process IDs to be killed: [473351] (in reverse order)
[2025-10-12 09:33:31] 2025-10-12 16:32:59,892 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 09:33:31] 2025-10-12 16:32:59,892 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 09:33:31] 2025-10-12 16:32:59,931 | INFO     | did not find any defunct processes belonging to 473351
[2025-10-12 09:33:31] 2025-10-12 16:32:59,955 | INFO     | did not find any defunct processes belonging to 473351
[2025-10-12 09:33:31] 2025-10-12 16:32:59,955 | INFO     | ready for new job
[2025-10-12 09:33:31] 2025-10-12 16:32:59,955 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 09:33:31] 2025-10-12 16:32:59,956 | INFO     | ***************************************
[2025-10-12 09:33:31] 2025-10-12 16:32:59,957 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 09:33:31] 2025-10-12 16:32:59,957 | INFO     | ***************************************
[2025-10-12 09:33:31] 2025-10-12 16:32:59,957 | INFO     | 
[2025-10-12 09:33:31] 2025-10-12 16:32:59,958 | INFO     | architecture information:
[2025-10-12 09:33:31] 2025-10-12 16:32:59,978 | INFO     | executing command: cat /etc/os-release
[2025-10-12 09:33:31] 2025-10-12 16:33:00,039 | INFO     | cat /etc/os-release:
[2025-10-12 09:33:31] NAME="CentOS Linux"
[2025-10-12 09:33:31] VERSION="7 (Core)"
[2025-10-12 09:33:31] ID="centos"
[2025-10-12 09:33:31] ID_LIKE="rhel fedora"
[2025-10-12 09:33:31] VERSION_ID="7"
[2025-10-12 09:33:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 09:33:31] ANSI_COLOR="0;31"
[2025-10-12 09:33:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 09:33:31] HOME_URL="https://www.centos.org/"
[2025-10-12 09:33:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 09:33:31] 
[2025-10-12 09:33:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 09:33:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 09:33:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 09:33:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 09:33:31] 
[2025-10-12 09:33:31] 2025-10-12 16:33:00,040 | INFO     | ***************************************
[2025-10-12 09:33:31] 2025-10-12 16:33:00,546 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-12 09:33:31] 2025-10-12 16:33:00,594 | INFO     | sufficient remaining disk space (1345932230656 B)
[2025-10-12 09:33:31] 2025-10-12 16:33:00,594 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 09:33:31] 2025-10-12 16:33:00,594 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 09:33:31] 2025-10-12 16:33:00,595 | INFO     | update_server=False
[2025-10-12 09:33:31] 2025-10-12 16:33:00,595 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 09:33:31] 2025-10-12 16:33:00,595 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:33:31] 2025-10-12 16:33:00,595 | INFO     | aborting loop
[2025-10-12 09:33:31] 2025-10-12 16:33:00,595 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 09:33:31] 2025-10-12 16:33:00,701 | INFO     | all payload control threads have been joined
[2025-10-12 09:33:31] 2025-10-12 16:33:00,732 | INFO     | all job control threads have been joined
[2025-10-12 09:33:31] 2025-10-12 16:33:01,352 | INFO     | all data control threads have been joined
[2025-10-12 09:33:31] 2025-10-12 16:33:01,600 | INFO     | [job] retrieve thread has finished
[2025-10-12 09:33:31] 2025-10-12 16:33:01,614 | INFO     | [job] job monitor thread has finished
[2025-10-12 09:33:31] 2025-10-12 16:33:01,652 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 09:33:31] 2025-10-12 16:33:01,708 | INFO     | [payload] control thread has finished
[2025-10-12 09:33:31] 2025-10-12 16:33:01,738 | INFO     | [job] control thread has finished
[2025-10-12 09:33:31] 2025-10-12 16:33:01,870 | INFO     | [payload] failed_post thread has finished
[2025-10-12 09:33:31] 2025-10-12 16:33:02,123 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 09:33:31] 2025-10-12 16:33:02,352 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 09:33:31] 2025-10-12 16:33:02,352 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 09:33:31] 2025-10-12 16:33:02,358 | INFO     | [data] control thread has finished
[2025-10-12 09:33:31] 2025-10-12 16:33:02,399 | INFO     | [payload] validate_post thread has finished
[2025-10-12 09:33:31] 2025-10-12 16:33:02,440 | INFO     | [job] validate thread has finished
[2025-10-12 09:33:31] 2025-10-12 16:33:02,509 | INFO     | [data] copytool_in thread has finished
[2025-10-12 09:33:31] 2025-10-12 16:33:02,603 | INFO     | [data] copytool_out thread has finished
[2025-10-12 09:33:31] 2025-10-12 16:33:02,630 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 09:33:31] 2025-10-12 16:33:03,180 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 09:33:31] 2025-10-12 16:33:03,647 | INFO     | [job] queue monitor thread has finished
[2025-10-12 09:33:31] 2025-10-12 16:33:07,191 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 09:33:31] 2025-10-12 16:33:11,253 | INFO     | [monitor] cgroup control has ended
[2025-10-12 09:33:31] 2025-10-12 16:33:11,814 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140038270744384)>', '<ExcThread(monitor, started 140037719049984)>']
[2025-10-12 09:33:31] 2025-10-12 16:33:16,840 | INFO     | all workflow threads have been joined
[2025-10-12 09:33:31] 2025-10-12 16:33:16,840 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 09:33:31] 2025-10-12 16:33:16,840 | INFO     | traces error code: 0
[2025-10-12 09:33:31] 2025-10-12 16:33:16,840 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 09:33:31] 2025-10-12 16:33:31,231 | INFO     | PID=466458 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 09:33:31] 2025-10-12 16:33:31,232 | INFO     | .. there are 33 such processes running
[2025-10-12 09:33:31] 2025-10-12 16:33:31,233 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 09:33:31] 2025-10-12 16:33:31,233 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 09:33:31] 2025-10-12 16:33:31,233 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 09:33:31] 2025-10-12 16:33:31,233 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 09:33:31] 2025-10-12 16:33:31,233 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 09:33:31] 2025-10-12 16:33:31,234 | INFO     | [monitor] control thread has ended
[2025-10-12 09:33:31] 2025-10-12 16:33:31,427 [wrapper] ==== pilot stdout END ====
[2025-10-12 09:33:31] 2025-10-12 16:33:31,441 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 09:33:31] 2025-10-12 16:33:31,452 [wrapper] pilotpid: 466458
[2025-10-12 09:33:31] 2025-10-12 16:33:31,472 [wrapper] Pilot exit status: 0
[2025-10-12 09:33:31] 2025-10-12 16:33:31,512 [wrapper] pandaids: 6840223403
[2025-10-12 09:33:31] 2025-10-12 16:33:31,601 [wrapper] cleanup supervisor_pilot  466464 466459
[2025-10-12 09:33:31] 2025-10-12 16:33:31,613 [wrapper] Test setup, not cleaning
[2025-10-12 09:33:31] 2025-10-12 16:33:31,616 [wrapper] apfmon messages muted
[2025-10-12 09:33:31] 2025-10-12 16:33:31,622 [wrapper] ==== wrapper stdout END ====
[2025-10-12 09:33:31] 2025-10-12 16:33:31,636 [wrapper] ==== wrapper stderr END ====
[2025-10-12 09:33:31]  *** Error codes and diagnostics ***
[2025-10-12 09:33:31]     "exeErrorCode": 65,
[2025-10-12 09:33:31]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 09:33:31]     "pilotErrorCode": 1305,
[2025-10-12 09:33:31]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 09:33:31]  *** Listing of results directory ***
[2025-10-12 09:33:31] total 218392
[2025-10-12 09:33:31] -rw-r--r--. 1 boinc boinc    557409 Oct 12 07:30 pilot3.tar.gz
[2025-10-12 09:33:31] -rw-r--r--. 1 boinc boinc      5112 Oct 12 07:58 queuedata.json
[2025-10-12 09:33:31] -rwx------. 1 boinc boinc     36292 Oct 12 07:59 runpilot2-wrapper.sh
[2025-10-12 09:33:31] -rw-r--r--. 1 boinc boinc       100 Oct 12 09:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 09:33:31] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 09:26 run_atlas
[2025-10-12 09:33:31] -rw-r--r--. 1 boinc boinc       105 Oct 12 09:26 job.xml
[2025-10-12 09:33:31] -rw-r--r--. 2 boinc boinc 219480572 Oct 12 09:26 EVNT.46676267._001741.pool.root.1
[2025-10-12 09:33:31] -rw-r--r--. 1 boinc boinc      6443 Oct 12 09:26 init_data.xml
[2025-10-12 09:33:31] -rw-r--r--. 2 boinc boinc     15120 Oct 12 09:26 start_atlas.sh
[2025-10-12 09:33:31] drwxrwx--x. 2 boinc boinc      4096 Oct 12 09:26 shared
[2025-10-12 09:33:31] -rw-r--r--. 2 boinc boinc    569690 Oct 12 09:26 input.tar.gz
[2025-10-12 09:33:31] -rw-r--r--. 1 boinc boinc         0 Oct 12 09:26 boinc_lockfile
[2025-10-12 09:33:31] -rw-r--r--. 1 boinc boinc      2549 Oct 12 09:26 pandaJob.out
[2025-10-12 09:33:31] -rw-------. 1 boinc boinc    975528 Oct 12 09:27 agis_schedconf.cvmfs.json
[2025-10-12 09:33:31] -rw-------. 1 boinc boinc   1560580 Oct 12 09:27 agis_ddmendpoints.agis.ALL.json
[2025-10-12 09:33:31] drwx------. 5 boinc boinc      4096 Oct 12 09:27 pilot3
[2025-10-12 09:33:31] -rw-r--r--. 1 boinc boinc       525 Oct 12 09:30 boinc_task_state.xml
[2025-10-12 09:33:31] -rw-------. 1 boinc boinc       989 Oct 12 09:30 memory_monitor_summary.json
[2025-10-12 09:33:31] -rw-------. 1 boinc boinc     23360 Oct 12 09:30 log.46676269._081512.job.log.tgz.1
[2025-10-12 09:33:31] -rw-------. 1 boinc boinc      8438 Oct 12 09:32 heartbeat.json
[2025-10-12 09:33:31] -rw-r--r--. 1 boinc boinc      8192 Oct 12 09:33 boinc_mmap_file
[2025-10-12 09:33:31] -rw-r--r--. 1 boinc boinc        23 Oct 12 09:33 wrapper_checkpoint.txt
[2025-10-12 09:33:31] -rw-------. 1 boinc boinc        95 Oct 12 09:33 pilot_heartbeat.json
[2025-10-12 09:33:31] -rw-------. 1 boinc boinc       892 Oct 12 09:33 pilotlog.txt
[2025-10-12 09:33:31] -rw-------. 1 boinc boinc    103254 Oct 12 09:33 log.46676269._081512.job.log.1
[2025-10-12 09:33:31] -rw-------. 1 boinc boinc       188 Oct 12 09:33 output.list
[2025-10-12 09:33:31] -rw-r--r--. 1 boinc boinc       620 Oct 12 09:33 runtime_log
[2025-10-12 09:33:31] -rw-------. 1 boinc boinc    143360 Oct 12 09:33 result.tar.gz
[2025-10-12 09:33:31] -rw-r--r--. 1 boinc boinc      8526 Oct 12 09:33 runtime_log.err
[2025-10-12 09:33:31] -rw-------. 1 boinc boinc       646 Oct 12 09:33 eyhKDmWiCS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJMkNDmvnjJJo.diag
[2025-10-12 09:33:31] -rw-r--r--. 1 boinc boinc     21530 Oct 12 09:33 stderr.txt
[2025-10-12 09:33:32] No HITS result produced
[2025-10-12 09:33:32]  *** Contents of shared directory: ***
[2025-10-12 09:33:32] total 215060
[2025-10-12 09:33:32] -rw-r--r--. 2 boinc boinc 219480572 Oct 12 09:26 ATLAS.root_0
[2025-10-12 09:33:32] -rw-r--r--. 2 boinc boinc     15120 Oct 12 09:26 start_atlas.sh
[2025-10-12 09:33:32] -rw-r--r--. 2 boinc boinc    569690 Oct 12 09:26 input.tar.gz
[2025-10-12 09:33:32] -rw-------. 1 boinc boinc    143360 Oct 12 09:33 result.tar.gz
09:33:33 (462405): run_atlas exited; CPU time 31.845495
09:33:33 (462405): called boinc_finish(0)

</stderr_txt>
]]>

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