Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:32:24 (75471): wrapper (7.7.26015): starting
12:32:24 (75471): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 12:32:24] Arguments: --nthreads 8
[2025-10-12 12:32:24] Threads: 8
[2025-10-12 12:32:24] Checking for CVMFS
[2025-10-12 12:32:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:32:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:32:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:32:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:32:26] 2.13.2.0 2754702 129489 397964 151627 3 16 20353939 32935937 79129 16776704 0 844059442 99.692 687506267 33248 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 12:32:26] CVMFS is ok
[2025-10-12 12:32:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:32:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:32:26] Further information can be found at the LHC@home message board.
[2025-10-12 12:32:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:32:26] Checking for apptainer binary...
[2025-10-12 12:32:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:32:26] Running /usr/bin/apptainer --version
[2025-10-12 12:32:26] apptainer version 1.4.3-1.el9
[2025-10-12 12:32:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:32:26] c7-9-14.aglt2.org
[2025-10-12 12:32:26] apptainer works
[2025-10-12 12:32:27] Set ATHENA_PROC_NUMBER=8
[2025-10-12 12:32:27] Set ATHENA_CORE_NUMBER=8
[2025-10-12 12:32:27] Starting ATLAS job with PandaID=6839866020
[2025-10-12 12:32:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 14:04:54]  *** The last 200 lines of the pilot log: ***
[2025-10-12 14:04:54] 2025-10-12 18:03:24,959 | INFO     | monitor loop #334: job 0:6839866020 is in state 'finished'
[2025-10-12 14:04:54] 2025-10-12 18:03:24,959 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:04:54] 2025-10-12 18:03:25,506 | INFO     | PID=86036 has CPU usage=13.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 14:04:54] 2025-10-12 18:03:25,506 | INFO     | .. there are 113 such processes running
[2025-10-12 14:04:54] 2025-10-12 18:03:26,508 | INFO     | time since job start (5389s) is within the limit (172800.0s)
[2025-10-12 14:04:54] 2025-10-12 18:03:26,938 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-10-12 14:04:54] 2025-10-12 18:03:27,463 | INFO     | monitor loop #335: job 0:6839866020 is in state 'finished'
[2025-10-12 14:04:54] 2025-10-12 18:03:27,464 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:04:54] 2025-10-12 18:03:28,518 | INFO     | time since job start (5391s) is within the limit (172800.0s)
[2025-10-12 14:04:54] 2025-10-12 18:03:29,968 | INFO     | monitor loop #336: job 0:6839866020 is in state 'finished'
[2025-10-12 14:04:54] 2025-10-12 18:03:29,969 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:04:54] 2025-10-12 18:03:30,525 | INFO     | time since job start (5393s) is within the limit (172800.0s)
[2025-10-12 14:04:54] 2025-10-12 18:03:32,476 | INFO     | monitor loop #337: job 0:6839866020 is in state 'finished'
[2025-10-12 14:04:54] 2025-10-12 18:03:32,476 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:04:54] 2025-10-12 18:03:32,536 | INFO     | time since job start (5395s) is within the limit (172800.0s)
[2025-10-12 14:04:54] 2025-10-12 18:03:34,559 | INFO     | time since job start (5397s) is within the limit (172800.0s)
[2025-10-12 14:04:54] 2025-10-12 18:03:34,993 | INFO     | monitor loop #338: job 0:6839866020 is in state 'finished'
[2025-10-12 14:04:54] 2025-10-12 18:03:34,993 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:04:54] 2025-10-12 18:03:36,576 | INFO     | time since job start (5399s) is within the limit (172800.0s)
[2025-10-12 14:04:54] 2025-10-12 18:03:37,536 | INFO     | monitor loop #339: job 0:6839866020 is in state 'finished'
[2025-10-12 14:04:54] 2025-10-12 18:03:37,537 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:04:54] 2025-10-12 18:03:38,585 | INFO     | time since job start (5401s) is within the limit (172800.0s)
[2025-10-12 14:04:54] 2025-10-12 18:03:40,041 | INFO     | monitor loop #340: job 0:6839866020 is in state 'finished'
[2025-10-12 14:04:54] 2025-10-12 18:03:40,042 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:04:54] 2025-10-12 18:03:40,595 | INFO     | time since job start (5403s) is within the limit (172800.0s)
[2025-10-12 14:04:54] 2025-10-12 18:03:42,567 | INFO     | monitor loop #341: job 0:6839866020 is in state 'finished'
[2025-10-12 14:04:54] 2025-10-12 18:03:42,568 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:04:54] 2025-10-12 18:03:42,601 | INFO     | time since job start (5405s) is within the limit (172800.0s)
[2025-10-12 14:04:54] 2025-10-12 18:03:44,612 | INFO     | time since job start (5407s) is within the limit (172800.0s)
[2025-10-12 14:04:54] 2025-10-12 18:03:45,072 | INFO     | monitor loop #342: job 0:6839866020 is in state 'finished'
[2025-10-12 14:04:54] 2025-10-12 18:03:45,073 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:04:54] 2025-10-12 18:03:46,618 | INFO     | time since job start (5409s) is within the limit (172800.0s)
[2025-10-12 14:04:54] 2025-10-12 18:03:47,576 | INFO     | monitor loop #343: job 0:6839866020 is in state 'finished'
[2025-10-12 14:04:54] 2025-10-12 18:03:47,577 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 14:04:54] 2025-10-12 18:03:48,599 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 14:04:54] 2025-10-12 18:03:48,604 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9759140625038
[2025-10-12 14:04:54] 2025-10-12 18:03:48,644 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6839866020/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 14:04:54] 2025-10-12 18:03:48,645 | INFO     | extracted standard info from prmon json
[2025-10-12 14:04:54] 2025-10-12 18:03:48,645 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 14:04:54] 2025-10-12 18:03:48,645 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 14:04:54] 2025-10-12 18:03:48,645 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 14:04:54] 2025-10-12 18:03:48,645 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 14:04:54] 2025-10-12 18:03:48,646 | INFO     | fitting pss+swap vs Time
[2025-10-12 14:04:54] 2025-10-12 18:03:48,646 | INFO     | sum of square deviations: 158737067.98750016
[2025-10-12 14:04:54] 2025-10-12 18:03:48,651 | INFO     | sum of deviations: -8345043171.337503
[2025-10-12 14:04:54] 2025-10-12 18:03:48,651 | INFO     | mean x: 1760289638.5125
[2025-10-12 14:04:54] 2025-10-12 18:03:48,651 | INFO     | mean y: 2229315.8375
[2025-10-12 14:04:54] 2025-10-12 18:03:48,651 | INFO     | -- intersect: 92543267232.71301
[2025-10-12 14:04:54] 2025-10-12 18:03:48,651 | INFO     | intersect: 92543267232.71301
[2025-10-12 14:04:54] 2025-10-12 18:03:48,651 | INFO     | chi2: 0.03736274976839698
[2025-10-12 14:04:54] 2025-10-12 18:03:48,651 | INFO     | -- intersect: 92543267232.71301
[2025-10-12 14:04:54] 2025-10-12 18:03:48,651 | INFO     | current memory leak: -52.57 B/s (using 80 data points, chi2=0.04)
[2025-10-12 14:04:54] 2025-10-12 18:03:48,651 | INFO     | could have reported an average CPU frequency of 3799 MHz (6 samples)
[2025-10-12 14:04:54] 2025-10-12 18:03:48,651 | INFO     | ..............................
[2025-10-12 14:04:54] 2025-10-12 18:03:48,651 | INFO     | . Timing measurements:
[2025-10-12 14:04:54] 2025-10-12 18:03:48,651 | INFO     | . get job = 0 s
[2025-10-12 14:04:54] 2025-10-12 18:03:48,651 | INFO     | . initial setup = 6 s
[2025-10-12 14:04:54] 2025-10-12 18:03:48,652 | INFO     | . payload setup = 27 s
[2025-10-12 14:04:54] 2025-10-12 18:03:48,652 | INFO     | . stage-in = 0 s
[2025-10-12 14:04:54] 2025-10-12 18:03:48,652 | INFO     | . payload execution = 5287 s
[2025-10-12 14:04:54] 2025-10-12 18:03:48,652 | INFO     | . stage-out = 1 s
[2025-10-12 14:04:54] 2025-10-12 18:03:48,652 | INFO     | . log creation = 0 s
[2025-10-12 14:04:54] 2025-10-12 18:03:48,652 | INFO     | ..............................
[2025-10-12 14:04:54] 2025-10-12 18:03:49,080 | INFO     | PID=86036 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 14:04:54] 2025-10-12 18:03:49,081 | INFO     | .. there are 114 such processes running
[2025-10-12 14:04:54] 2025-10-12 18:03:49,171 | INFO     | 
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | job summary report
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | --------------------------------------------------
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | PanDA job id: 6839866020
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | task id: 46676269
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | errors: (none)
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | pilot state: finished 
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | transexitcode: 0
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | exeerrorcode: 0
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | exeerrordiag: 
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | exitcode: 0
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | exitmsg: OK
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | cpuconsumptiontime: 22353 s
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | nevents: 400
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | neventsw: 0
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | pid: 115657
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | pgrp: 115657
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | corecount: 8
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | event service: False
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 23: 2348913, 29: 2349203, 34: 2349231, 5318: 2375689, 5319: 2375688, 5321: 2384742, 5323: 2384798, 5356: 2384992}
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | --------------------------------------------------
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | 
[2025-10-12 14:04:54] 2025-10-12 18:03:49,172 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-12 14:04:54] 2025-10-12 18:03:49,250 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 14:04:54] 2025-10-12 18:03:49,250 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 14:04:54] 2025-10-12 18:03:49,250 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 14:04:54] 2025-10-12 18:03:49,250 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 14:04:54] 2025-10-12 18:03:49,250 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 14:04:54] 2025-10-12 18:03:49,250 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 14:04:54] 2025-10-12 18:03:49,250 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 14:04:54] 2025-10-12 18:03:49,250 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 14:04:54] 2025-10-12 18:03:49,251 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 14:04:54] 2025-10-12 18:03:49,251 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 14:04:54] 2025-10-12 18:03:49,251 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 14:04:54] 2025-10-12 18:03:49,251 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 14:04:54] 2025-10-12 18:03:49,251 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 14:04:54] 2025-10-12 18:03:49,251 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 14:04:54] 2025-10-12 18:03:49,251 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 14:04:54] 2025-10-12 18:03:49,251 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 14:04:54] 2025-10-12 18:03:49,251 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 14:04:54] 2025-10-12 18:03:49,251 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 14:04:54] 2025-10-12 18:03:49,251 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 14:04:54] 2025-10-12 18:03:49,251 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 14:04:54] 2025-10-12 18:03:49,251 | INFO     | job 6839866020 has completed (purged errors)
[2025-10-12 14:04:54] 2025-10-12 18:03:49,251 | INFO     | overall cleanup function is called
[2025-10-12 14:04:54] 2025-10-12 18:03:50,273 | INFO     | --- collectZombieJob: --- 10, [115657]
[2025-10-12 14:04:54] 2025-10-12 18:03:50,273 | INFO     | zombie collector waiting for pid 115657
[2025-10-12 14:04:54] 2025-10-12 18:03:50,273 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 14:04:54] 2025-10-12 18:03:50,273 | INFO     | collected zombie processes
[2025-10-12 14:04:54] 2025-10-12 18:03:50,273 | INFO     | will attempt to kill all subprocesses of pid=115657
[2025-10-12 14:04:54] 2025-10-12 18:03:51,797 | INFO     | process IDs to be killed: [115657] (in reverse order)
[2025-10-12 14:04:54] 2025-10-12 18:03:52,478 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 14:04:54] 2025-10-12 18:03:52,479 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 14:04:54] 2025-10-12 18:03:52,648 | INFO     | did not find any defunct processes belonging to 115657
[2025-10-12 14:04:54] 2025-10-12 18:03:52,754 | INFO     | did not find any defunct processes belonging to 115657
[2025-10-12 14:04:54] 2025-10-12 18:03:52,754 | INFO     | ready for new job
[2025-10-12 14:04:54] 2025-10-12 18:03:52,754 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 14:04:54] 2025-10-12 18:03:52,780 | INFO     | ***************************************
[2025-10-12 14:04:54] 2025-10-12 18:03:52,780 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 14:04:54] 2025-10-12 18:03:52,780 | INFO     | ***************************************
[2025-10-12 14:04:54] 2025-10-12 18:03:52,780 | INFO     | 
[2025-10-12 14:04:54] 2025-10-12 18:03:52,836 | INFO     | architecture information:
[2025-10-12 14:04:54] 2025-10-12 18:03:52,844 | INFO     | executing command: cat /etc/os-release
[2025-10-12 14:04:54] 2025-10-12 18:03:52,889 | INFO     | cat /etc/os-release:
[2025-10-12 14:04:54] NAME="CentOS Linux"
[2025-10-12 14:04:54] VERSION="7 (Core)"
[2025-10-12 14:04:54] ID="centos"
[2025-10-12 14:04:54] ID_LIKE="rhel fedora"
[2025-10-12 14:04:54] VERSION_ID="7"
[2025-10-12 14:04:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 14:04:54] ANSI_COLOR="0;31"
[2025-10-12 14:04:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 14:04:54] HOME_URL="https://www.centos.org/"
[2025-10-12 14:04:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 14:04:54] 
[2025-10-12 14:04:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 14:04:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 14:04:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 14:04:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 14:04:54] 
[2025-10-12 14:04:54] 2025-10-12 18:03:52,889 | INFO     | ***************************************
[2025-10-12 14:04:54] 2025-10-12 18:03:53,393 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-12 14:04:54] 2025-10-12 18:03:53,448 | INFO     | sufficient remaining disk space (72437727232 B)
[2025-10-12 14:04:54] 2025-10-12 18:03:53,448 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 14:04:54] 2025-10-12 18:03:53,448 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 14:04:54] 2025-10-12 18:03:53,448 | INFO     | update_server=False
[2025-10-12 14:04:54] 2025-10-12 18:03:53,448 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 14:04:54] 2025-10-12 18:03:53,571 | INFO     | all data control threads have been joined
[2025-10-12 14:04:54] 2025-10-12 18:03:53,608 | INFO     | all payload control threads have been joined
[2025-10-12 14:04:54] 2025-10-12 18:03:53,616 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 14:04:54] 2025-10-12 18:03:53,650 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:04:54] 2025-10-12 18:03:53,651 | INFO     | aborting loop
[2025-10-12 14:04:54] 2025-10-12 18:03:53,868 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 14:04:54] 2025-10-12 18:03:54,065 | INFO     | all job control threads have been joined
[2025-10-12 14:04:54] 2025-10-12 18:03:54,465 | INFO     | [job] retrieve thread has finished
[2025-10-12 14:04:54] 2025-10-12 18:03:54,577 | INFO     | [data] control thread has finished
[2025-10-12 14:04:54] 2025-10-12 18:03:54,615 | INFO     | [payload] control thread has finished
[2025-10-12 14:04:54] 2025-10-12 18:03:54,656 | INFO     | [job] job monitor thread has finished
[2025-10-12 14:04:54] 2025-10-12 18:03:54,753 | INFO     | [payload] validate_post thread has finished
[2025-10-12 14:04:54] 2025-10-12 18:03:54,850 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 14:04:54] 2025-10-12 18:03:54,851 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 14:04:54] 2025-10-12 18:03:54,875 | INFO     | [job] queue monitor thread has finished
[2025-10-12 14:04:54] 2025-10-12 18:03:54,919 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 14:04:54] 2025-10-12 18:03:55,072 | INFO     | [job] control thread has finished
[2025-10-12 14:04:54] 2025-10-12 18:03:55,342 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 14:04:54] 2025-10-12 18:03:55,577 | INFO     | [job] validate thread has finished
[2025-10-12 14:04:54] 2025-10-12 18:03:55,578 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 14:04:54] 2025-10-12 18:03:55,805 | INFO     | [data] copytool_in thread has finished
[2025-10-12 14:04:54] 2025-10-12 18:03:55,922 | INFO     | [payload] failed_post thread has finished
[2025-10-12 14:04:54] 2025-10-12 18:03:56,926 | INFO     | [data] copytool_out thread has finished
[2025-10-12 14:04:54] 2025-10-12 18:03:57,628 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 14:04:54] 2025-10-12 18:04:24,019 | INFO     | PID=86036 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 14:04:54] 2025-10-12 18:04:24,019 | INFO     | .. there are 114 such processes running
[2025-10-12 14:04:54] 2025-10-12 18:04:24,024 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 14:04:54] 2025-10-12 18:04:24,024 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 14:04:54] 2025-10-12 18:04:24,024 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 14:04:54] 2025-10-12 18:04:46,686 | INFO     | [monitor] cgroup control has ended
[2025-10-12 14:04:54] 2025-10-12 18:04:47,608 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140715981158208)>', '<ExcThread(monitor, started 140715224962816)>']
[2025-10-12 14:04:54] 2025-10-12 18:04:48,182 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 14:04:54] 2025-10-12 18:04:48,183 | INFO     | [monitor] control thread has ended
[2025-10-12 14:04:54] 2025-10-12 18:04:52,640 | INFO     | all workflow threads have been joined
[2025-10-12 14:04:54] 2025-10-12 18:04:52,641 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 14:04:54] 2025-10-12 18:04:52,641 | INFO     | traces error code: 0
[2025-10-12 14:04:54] 2025-10-12 18:04:52,641 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 14:04:54] 2025-10-12 18:04:53,659 [wrapper] ==== pilot stdout END ====
[2025-10-12 14:04:54] 2025-10-12 18:04:53,692 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 14:04:54] 2025-10-12 18:04:53,708 [wrapper] pilotpid: 86036
[2025-10-12 14:04:54] 2025-10-12 18:04:53,724 [wrapper] Pilot exit status: 0
[2025-10-12 14:04:54] 2025-10-12 18:04:53,843 [wrapper] pandaids: 6839866020
[2025-10-12 14:04:54] 2025-10-12 18:04:54,198 [wrapper] cleanup supervisor_pilot 1376080 86037
[2025-10-12 14:04:54] 2025-10-12 18:04:54,244 [wrapper] Test setup, not cleaning
[2025-10-12 14:04:54] 2025-10-12 18:04:54,283 [wrapper] apfmon messages muted
[2025-10-12 14:04:54] 2025-10-12 18:04:54,314 [wrapper] ==== wrapper stdout END ====
[2025-10-12 14:04:54] 2025-10-12 18:04:54,349 [wrapper] ==== wrapper stderr END ====
[2025-10-12 14:04:54]  *** Error codes and diagnostics ***
[2025-10-12 14:04:54]     "exeErrorCode": 0,
[2025-10-12 14:04:54]     "exeErrorDiag": "",
[2025-10-12 14:04:54]     "pilotErrorCode": 0,
[2025-10-12 14:04:54]     "pilotErrorDiag": "",
[2025-10-12 14:04:54]  *** Listing of results directory ***
[2025-10-12 14:04:54] total 407808
[2025-10-12 14:04:54] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 05:51 pilot3.tar.gz
[2025-10-12 14:04:54] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 06:05 queuedata.json
[2025-10-12 14:04:54] -rwx------. 1 boincer umatlas     36292 Oct 12 06:07 runpilot2-wrapper.sh
[2025-10-12 14:04:54] -rw-r--r--. 1 boincer umatlas       100 Oct 12 12:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 14:04:54] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 12:32 run_atlas
[2025-10-12 14:04:54] -rw-r--r--. 1 boincer umatlas       105 Oct 12 12:32 job.xml
[2025-10-12 14:04:54] -rw-r--r--. 2 boincer umatlas 220672513 Oct 12 12:32 EVNT.46676267._003606.pool.root.1
[2025-10-12 14:04:54] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 12:32 start_atlas.sh
[2025-10-12 14:04:54] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 12:32 shared
[2025-10-12 14:04:54] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 12:32 input.tar.gz
[2025-10-12 14:04:54] -rw-r--r--. 1 boincer umatlas         0 Oct 12 12:32 boinc_lockfile
[2025-10-12 14:04:54] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 12:32 pandaJob.out
[2025-10-12 14:04:54] -rw-------. 1 boincer umatlas    975528 Oct 12 12:33 agis_schedconf.cvmfs.json
[2025-10-12 14:04:54] -rw-------. 1 boincer umatlas   1560580 Oct 12 12:33 agis_ddmendpoints.agis.ALL.json
[2025-10-12 14:04:54] drwx------. 5 boincer umatlas      4096 Oct 12 12:33 pilot3
[2025-10-12 14:04:54] -rw-------. 1 boincer umatlas 190930208 Oct 12 14:02 HITS.46676269._075755.pool.root.1
[2025-10-12 14:04:54] -rw-r--r--. 1 boincer umatlas      7160 Oct 12 14:02 init_data.xml
[2025-10-12 14:04:54] -rw-r--r--. 1 boincer umatlas       529 Oct 12 14:02 boinc_task_state.xml
[2025-10-12 14:04:54] -rw-------. 1 boincer umatlas      1049 Oct 12 14:03 memory_monitor_summary.json
[2025-10-12 14:04:54] -rw-------. 1 boincer umatlas    339176 Oct 12 14:03 log.46676269._075755.job.log.tgz.1
[2025-10-12 14:04:54] -rw-------. 1 boincer umatlas      7783 Oct 12 14:03 heartbeat.json
[2025-10-12 14:04:54] -rw-------. 1 boincer umatlas        95 Oct 12 14:04 pilot_heartbeat.json
[2025-10-12 14:04:54] -rw-------. 1 boincer umatlas      4823 Oct 12 14:04 pilotlog.txt
[2025-10-12 14:04:54] -rw-------. 1 boincer umatlas    704355 Oct 12 14:04 log.46676269._075755.job.log.1
[2025-10-12 14:04:54] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 14:04 boinc_mmap_file
[2025-10-12 14:04:54] -rw-------. 1 boincer umatlas       357 Oct 12 14:04 output.list
[2025-10-12 14:04:54] -rw-r--r--. 1 boincer umatlas       620 Oct 12 14:04 runtime_log
[2025-10-12 14:04:54] -rw-------. 1 boincer umatlas   1064960 Oct 12 14:04 result.tar.gz
[2025-10-12 14:04:54] -rw-r--r--. 1 boincer umatlas      8698 Oct 12 14:04 runtime_log.err
[2025-10-12 14:04:54] -rw-------. 1 boincer umatlas       651 Oct 12 14:04 JsEMDmaA8R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdPjNDmL9CkTm.diag
[2025-10-12 14:04:54] -rw-r--r--. 1 boincer umatlas        27 Oct 12 14:04 wrapper_checkpoint.txt
[2025-10-12 14:04:54] -rw-r--r--. 1 boincer umatlas     22156 Oct 12 14:04 stderr.txt
[2025-10-12 14:04:54] HITS file was successfully produced:
[2025-10-12 14:04:54] -rw-------. 1 boincer umatlas 190930208 Oct 12 14:02 shared/HITS.pool.root.1
[2025-10-12 14:04:55]  *** Contents of shared directory: ***
[2025-10-12 14:04:55] total 403584
[2025-10-12 14:04:55] -rw-r--r--. 2 boincer umatlas 220672513 Oct 12 12:32 ATLAS.root_0
[2025-10-12 14:04:55] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 12:32 start_atlas.sh
[2025-10-12 14:04:55] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 12:32 input.tar.gz
[2025-10-12 14:04:55] -rw-------. 1 boincer umatlas 190930208 Oct 12 14:02 HITS.pool.root.1
[2025-10-12 14:04:55] -rw-------. 1 boincer umatlas   1064960 Oct 12 14:04 result.tar.gz
14:04:56 (75471): run_atlas exited; CPU time 22544.113922
14:04:56 (75471): called boinc_finish(0)

</stderr_txt>
]]>

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