Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:16:24 (753): wrapper (7.7.26015): starting
12:16:24 (753): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 12:16:24] Arguments: --nthreads 8
[2025-10-12 12:16:24] Threads: 8
[2025-10-12 12:16:24] Checking for CVMFS
[2025-10-12 12:16:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:16:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:16:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:16:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:16:25] 2.11.2.0 2880 88825 80460 151625 2 57 14026191 20275200 1 130560 0 43477178 99.988 2809929 18174 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 12:16:25] CVMFS is ok
[2025-10-12 12:16:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:16:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:16:25] Further information can be found at the LHC@home message board.
[2025-10-12 12:16:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:16:25] Checking for apptainer binary...
[2025-10-12 12:16:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:16:25] Running /usr/bin/apptainer --version
[2025-10-12 12:16:25] apptainer version 1.3.2-1.el7
[2025-10-12 12:16:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:16:26] c-115-10.aglt2.org
[2025-10-12 12:16:26] apptainer works
[2025-10-12 12:16:26] Set ATHENA_PROC_NUMBER=8
[2025-10-12 12:16:26] Set ATHENA_CORE_NUMBER=8
[2025-10-12 12:16:26] Starting ATLAS job with PandaID=6839988419
[2025-10-12 12:16:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:09:52 (14851): wrapper (7.7.26015): starting
13:09:52 (14851): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 13:09:52] Arguments: --nthreads 8
[2025-10-12 13:09:52] Threads: 8
[2025-10-12 13:09:52] This job has been restarted, cleaning up previous attempt
[2025-10-12 13:09:52] Checking for CVMFS
[2025-10-12 13:09:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 13:09:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 13:09:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 13:09:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 13:09:53] 2.11.2.0 2880 88879 85280 151627 1 18 14088270 20275200 1 130560 0 43543365 99.988 2811241 18179 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 13:09:53] CVMFS is ok
[2025-10-12 13:09:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 13:09:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 13:09:53] Further information can be found at the LHC@home message board.
[2025-10-12 13:09:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 13:09:53] Checking for apptainer binary...
[2025-10-12 13:09:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 13:09:53] Running /usr/bin/apptainer --version
[2025-10-12 13:09:53] apptainer version 1.3.2-1.el7
[2025-10-12 13:09:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 13:09:54] c-115-10.aglt2.org
[2025-10-12 13:09:54] apptainer works
[2025-10-12 13:09:54] Set ATHENA_PROC_NUMBER=8
[2025-10-12 13:09:54] Set ATHENA_CORE_NUMBER=8
[2025-10-12 13:09:54] Starting ATLAS job with PandaID=6839988419
[2025-10-12 13:09:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 15:07:44]  *** The last 200 lines of the pilot log: ***
[2025-10-12 15:07:44] 2025-10-12 19:07:12,394 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 15:07:44] 2025-10-12 19:07:12,395 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 15:07:44] 2025-10-12 19:07:12,395 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 15:07:44] 2025-10-12 19:07:12,395 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 15:07:44] 2025-10-12 19:07:12,398 | INFO     | fitting pss+swap vs Time
[2025-10-12 15:07:44] 2025-10-12 19:07:12,398 | INFO     | sum of square deviations: 471562330.0
[2025-10-12 15:07:44] 2025-10-12 19:07:12,399 | INFO     | sum of deviations: 9734452224.0
[2025-10-12 15:07:44] 2025-10-12 19:07:12,399 | INFO     | mean x: 1760292517.0
[2025-10-12 15:07:44] 2025-10-12 19:07:12,399 | INFO     | mean y: 2462594.3739130436
[2025-10-12 15:07:44] 2025-10-12 19:07:12,399 | INFO     | -- intersect: -36335222409.00879
[2025-10-12 15:07:44] 2025-10-12 19:07:12,399 | INFO     | intersect: -36335222409.00879
[2025-10-12 15:07:44] 2025-10-12 19:07:12,400 | INFO     | chi2: 2.226540398570791
[2025-10-12 15:07:44] 2025-10-12 19:07:12,400 | INFO     | sum of square deviations: 412686807.5
[2025-10-12 15:07:44] 2025-10-12 19:07:12,400 | INFO     | sum of deviations: 17018154845.000002
[2025-10-12 15:07:44] 2025-10-12 19:07:12,401 | INFO     | mean x: 1760292364.5
[2025-10-12 15:07:44] 2025-10-12 19:07:12,401 | INFO     | mean y: 2480730.1454545455
[2025-10-12 15:07:44] 2025-10-12 19:07:12,401 | INFO     | -- intersect: -72587501520.57668
[2025-10-12 15:07:44] 2025-10-12 19:07:12,401 | INFO     | intersect: -72587501520.57668
[2025-10-12 15:07:44] 2025-10-12 19:07:12,401 | INFO     | chi2: 1.375511541177747
[2025-10-12 15:07:44] 2025-10-12 19:07:12,401 | INFO     | current chi2=1.375511541177747 (change=38.222026330145034 %)
[2025-10-12 15:07:44] 2025-10-12 19:07:12,402 | INFO     | sum of square deviations: 358927660.0
[2025-10-12 15:07:44] 2025-10-12 19:07:12,402 | INFO     | sum of deviations: 16139021503.0
[2025-10-12 15:07:44] 2025-10-12 19:07:12,402 | INFO     | mean x: 1760292212.0
[2025-10-12 15:07:44] 2025-10-12 19:07:12,402 | INFO     | mean y: 2478234.5904761907
[2025-10-12 15:07:44] 2025-10-12 19:07:12,403 | INFO     | -- intersect: -79148272813.77242
[2025-10-12 15:07:44] 2025-10-12 19:07:12,403 | INFO     | intersect: -79148272813.77242
[2025-10-12 15:07:44] 2025-10-12 19:07:12,403 | INFO     | chi2: 1.3769222220826427
[2025-10-12 15:07:44] 2025-10-12 19:07:12,403 | INFO     | current chi2=1.3769222220826427 (change=-0.10255682069289303 %)
[2025-10-12 15:07:44] 2025-10-12 19:07:12,403 | INFO     | right removable region: 104
[2025-10-12 15:07:44] 2025-10-12 19:07:12,403 | INFO     | sum of square deviations: 412686807.5
[2025-10-12 15:07:44] 2025-10-12 19:07:12,404 | INFO     | sum of deviations: -5571932516.0
[2025-10-12 15:07:44] 2025-10-12 19:07:12,404 | INFO     | mean x: 1760292669.5
[2025-10-12 15:07:44] 2025-10-12 19:07:12,404 | INFO     | mean y: 2501349.4727272727
[2025-10-12 15:07:44] 2025-10-12 19:07:12,404 | INFO     | -- intersect: 23769270203.268696
[2025-10-12 15:07:44] 2025-10-12 19:07:12,405 | INFO     | intersect: 23769270203.268696
[2025-10-12 15:07:44] 2025-10-12 19:07:12,405 | INFO     | chi2: 0.9425670363495328
[2025-10-12 15:07:44] 2025-10-12 19:07:12,405 | INFO     | current chi2=0.9425670363495328 (change=57.666744472520534 %)
[2025-10-12 15:07:44] 2025-10-12 19:07:12,405 | INFO     | sum of square deviations: 358927660.0
[2025-10-12 15:07:44] 2025-10-12 19:07:12,406 | INFO     | sum of deviations: -8675615200.0
[2025-10-12 15:07:44] 2025-10-12 19:07:12,406 | INFO     | mean x: 1760292822.0
[2025-10-12 15:07:44] 2025-10-12 19:07:12,406 | INFO     | mean y: 2509972.7523809522
[2025-10-12 15:07:44] 2025-10-12 19:07:12,406 | INFO     | -- intersect: 42550423842.06547
[2025-10-12 15:07:44] 2025-10-12 19:07:12,406 | INFO     | intersect: 42550423842.06547
[2025-10-12 15:07:44] 2025-10-12 19:07:12,406 | INFO     | chi2: 0.8908334553864273
[2025-10-12 15:07:44] 2025-10-12 19:07:12,407 | INFO     | current chi2=0.8908334553864273 (change=5.488583725934697 %)
[2025-10-12 15:07:44] 2025-10-12 19:07:12,407 | INFO     | left removable region: 20
[2025-10-12 15:07:44] 2025-10-12 19:07:12,407 | INFO     | sum of square deviations: 183761585.0
[2025-10-12 15:07:44] 2025-10-12 19:07:12,407 | INFO     | sum of deviations: -1233940208.0000005
[2025-10-12 15:07:44] 2025-10-12 19:07:12,407 | INFO     | mean x: 1760292791.5
[2025-10-12 15:07:44] 2025-10-12 19:07:12,408 | INFO     | mean y: 2532024.9285714286
[2025-10-12 15:07:44] 2025-10-12 19:07:12,408 | INFO     | -- intersect: 11822717692.593615
[2025-10-12 15:07:44] 2025-10-12 19:07:12,408 | INFO     | intersect: 11822717692.593615
[2025-10-12 15:07:44] 2025-10-12 19:07:12,408 | INFO     | chi2: 0.003588442473955113
[2025-10-12 15:07:44] 2025-10-12 19:07:12,408 | INFO     | -- intersect: 11822717692.593615
[2025-10-12 15:07:44] 2025-10-12 19:07:12,408 | INFO     | current memory leak: -6.71 B/s (using 84 data points, chi2=0.00)
[2025-10-12 15:07:44] 2025-10-12 19:07:12,409 | INFO     | could have reported an average CPU frequency of 2083 MHz (7 samples)
[2025-10-12 15:07:44] 2025-10-12 19:07:12,409 | INFO     | ..............................
[2025-10-12 15:07:44] 2025-10-12 19:07:12,409 | INFO     | . Timing measurements:
[2025-10-12 15:07:44] 2025-10-12 19:07:12,409 | INFO     | . get job = 0 s
[2025-10-12 15:07:44] 2025-10-12 19:07:12,409 | INFO     | . initial setup = 1 s
[2025-10-12 15:07:44] 2025-10-12 19:07:12,409 | INFO     | . payload setup = 8 s
[2025-10-12 15:07:44] 2025-10-12 19:07:12,409 | INFO     | . stage-in = 0 s
[2025-10-12 15:07:44] 2025-10-12 19:07:12,409 | INFO     | . payload execution = 6982 s
[2025-10-12 15:07:44] 2025-10-12 19:07:12,410 | INFO     | . stage-out = 0 s
[2025-10-12 15:07:44] 2025-10-12 19:07:12,410 | INFO     | . log creation = 0 s
[2025-10-12 15:07:44] 2025-10-12 19:07:12,410 | INFO     | ..............................
[2025-10-12 15:07:44] 2025-10-12 19:07:12,750 | INFO     | 
[2025-10-12 15:07:44] 2025-10-12 19:07:12,750 | INFO     | job summary report
[2025-10-12 15:07:44] 2025-10-12 19:07:12,750 | INFO     | --------------------------------------------------
[2025-10-12 15:07:44] 2025-10-12 19:07:12,751 | INFO     | PanDA job id: 6839988419
[2025-10-12 15:07:44] 2025-10-12 19:07:12,751 | INFO     | task id: 46676269
[2025-10-12 15:07:44] 2025-10-12 19:07:12,751 | INFO     | errors: (none)
[2025-10-12 15:07:44] 2025-10-12 19:07:12,751 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 15:07:44] 2025-10-12 19:07:12,751 | INFO     | pilot state: finished 
[2025-10-12 15:07:44] 2025-10-12 19:07:12,751 | INFO     | transexitcode: 0
[2025-10-12 15:07:44] 2025-10-12 19:07:12,752 | INFO     | exeerrorcode: 0
[2025-10-12 15:07:44] 2025-10-12 19:07:12,752 | INFO     | exeerrordiag: 
[2025-10-12 15:07:44] 2025-10-12 19:07:12,752 | INFO     | exitcode: 0
[2025-10-12 15:07:44] 2025-10-12 19:07:12,752 | INFO     | exitmsg: OK
[2025-10-12 15:07:44] 2025-10-12 19:07:12,752 | INFO     | cpuconsumptiontime: 50421 s
[2025-10-12 15:07:44] 2025-10-12 19:07:12,752 | INFO     | nevents: 400
[2025-10-12 15:07:44] 2025-10-12 19:07:12,753 | INFO     | neventsw: 0
[2025-10-12 15:07:44] 2025-10-12 19:07:12,753 | INFO     | pid: 25260
[2025-10-12 15:07:44] 2025-10-12 19:07:12,753 | INFO     | pgrp: 25260
[2025-10-12 15:07:44] 2025-10-12 19:07:12,753 | INFO     | corecount: 8
[2025-10-12 15:07:44] 2025-10-12 19:07:12,753 | INFO     | event service: False
[2025-10-12 15:07:44] 2025-10-12 19:07:12,753 | INFO     | sizes: {0: 2348857, 6: 2349119, 11: 2349147, 6995: 2376373, 6997: 2385371, 6999: 2385455, 7007: 2385777}
[2025-10-12 15:07:44] 2025-10-12 19:07:12,753 | INFO     | --------------------------------------------------
[2025-10-12 15:07:44] 2025-10-12 19:07:12,754 | INFO     | 
[2025-10-12 15:07:44] 2025-10-12 19:07:12,754 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 15:07:44] 2025-10-12 19:07:12,781 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 15:07:44] 2025-10-12 19:07:12,782 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 15:07:44] 2025-10-12 19:07:12,782 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 15:07:44] 2025-10-12 19:07:12,782 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 15:07:44] 2025-10-12 19:07:12,782 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 15:07:44] 2025-10-12 19:07:12,783 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 15:07:44] 2025-10-12 19:07:12,783 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 15:07:44] 2025-10-12 19:07:12,783 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 15:07:44] 2025-10-12 19:07:12,783 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 15:07:44] 2025-10-12 19:07:12,783 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 15:07:44] 2025-10-12 19:07:12,783 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 15:07:44] 2025-10-12 19:07:12,784 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 15:07:44] 2025-10-12 19:07:12,784 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 15:07:44] 2025-10-12 19:07:12,784 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 15:07:44] 2025-10-12 19:07:12,784 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 15:07:44] 2025-10-12 19:07:12,784 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 15:07:44] 2025-10-12 19:07:12,785 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 15:07:44] 2025-10-12 19:07:12,785 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 15:07:44] 2025-10-12 19:07:12,785 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 15:07:44] 2025-10-12 19:07:12,785 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 15:07:44] 2025-10-12 19:07:12,785 | INFO     | job 6839988419 has completed (purged errors)
[2025-10-12 15:07:44] 2025-10-12 19:07:12,786 | INFO     | overall cleanup function is called
[2025-10-12 15:07:44] 2025-10-12 19:07:13,793 | INFO     | --- collectZombieJob: --- 10, [25260]
[2025-10-12 15:07:44] 2025-10-12 19:07:13,793 | INFO     | zombie collector waiting for pid 25260
[2025-10-12 15:07:44] 2025-10-12 19:07:13,793 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 15:07:44] 2025-10-12 19:07:13,794 | INFO     | collected zombie processes
[2025-10-12 15:07:44] 2025-10-12 19:07:13,794 | INFO     | will attempt to kill all subprocesses of pid=25260
[2025-10-12 15:07:44] 2025-10-12 19:07:13,877 | INFO     | process IDs to be killed: [25260] (in reverse order)
[2025-10-12 15:07:44] 2025-10-12 19:07:13,935 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 15:07:44] 2025-10-12 19:07:13,935 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 15:07:44] 2025-10-12 19:07:13,938 | INFO     | did not find any defunct processes belonging to 25260
[2025-10-12 15:07:44] 2025-10-12 19:07:13,941 | INFO     | did not find any defunct processes belonging to 25260
[2025-10-12 15:07:44] 2025-10-12 19:07:13,941 | INFO     | ready for new job
[2025-10-12 15:07:44] 2025-10-12 19:07:13,941 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 15:07:44] 2025-10-12 19:07:13,942 | INFO     | ***************************************
[2025-10-12 15:07:44] 2025-10-12 19:07:13,943 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 15:07:44] 2025-10-12 19:07:13,943 | INFO     | ***************************************
[2025-10-12 15:07:44] 2025-10-12 19:07:13,943 | INFO     | 
[2025-10-12 15:07:44] 2025-10-12 19:07:13,943 | INFO     | architecture information:
[2025-10-12 15:07:44] 2025-10-12 19:07:13,944 | INFO     | executing command: cat /etc/os-release
[2025-10-12 15:07:44] 2025-10-12 19:07:13,963 | INFO     | cat /etc/os-release:
[2025-10-12 15:07:44] NAME="CentOS Linux"
[2025-10-12 15:07:44] VERSION="7 (Core)"
[2025-10-12 15:07:44] ID="centos"
[2025-10-12 15:07:44] ID_LIKE="rhel fedora"
[2025-10-12 15:07:44] VERSION_ID="7"
[2025-10-12 15:07:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 15:07:44] ANSI_COLOR="0;31"
[2025-10-12 15:07:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 15:07:44] HOME_URL="https://www.centos.org/"
[2025-10-12 15:07:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 15:07:44] 
[2025-10-12 15:07:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 15:07:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 15:07:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 15:07:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 15:07:44] 
[2025-10-12 15:07:44] 2025-10-12 19:07:13,964 | INFO     | ***************************************
[2025-10-12 15:07:44] 2025-10-12 19:07:14,467 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 15:07:44] 2025-10-12 19:07:14,487 | INFO     | sufficient remaining disk space (18587058176 B)
[2025-10-12 15:07:44] 2025-10-12 19:07:14,487 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 15:07:44] 2025-10-12 19:07:14,488 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 15:07:44] 2025-10-12 19:07:14,488 | INFO     | update_server=False
[2025-10-12 15:07:44] 2025-10-12 19:07:14,488 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 15:07:44] 2025-10-12 19:07:14,489 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:07:44] 2025-10-12 19:07:14,489 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 15:07:44] 2025-10-12 19:07:14,517 | INFO     | all data control threads have been joined
[2025-10-12 15:07:44] 2025-10-12 19:07:14,579 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:07:44] 2025-10-12 19:07:14,579 | INFO     | aborting loop
[2025-10-12 15:07:44] 2025-10-12 19:07:15,359 | INFO     | all payload control threads have been joined
[2025-10-12 15:07:44] 2025-10-12 19:07:15,494 | INFO     | [job] retrieve thread has finished
[2025-10-12 15:07:44] 2025-10-12 19:07:15,494 | INFO     | [job] queue monitor thread has finished
[2025-10-12 15:07:44] 2025-10-12 19:07:15,513 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 15:07:44] 2025-10-12 19:07:15,523 | INFO     | [data] control thread has finished
[2025-10-12 15:07:44] 2025-10-12 19:07:15,556 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 15:07:44] 2025-10-12 19:07:15,585 | INFO     | [job] job monitor thread has finished
[2025-10-12 15:07:44] 2025-10-12 19:07:15,690 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 15:07:44] 2025-10-12 19:07:15,968 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 15:07:44] 2025-10-12 19:07:16,066 | INFO     | all job control threads have been joined
[2025-10-12 15:07:44] 2025-10-12 19:07:16,190 | INFO     | [payload] validate_post thread has finished
[2025-10-12 15:07:44] 2025-10-12 19:07:16,365 | INFO     | [payload] control thread has finished
[2025-10-12 15:07:44] 2025-10-12 19:07:16,495 | INFO     | [data] copytool_out thread has finished
[2025-10-12 15:07:44] 2025-10-12 19:07:16,509 | INFO     | [payload] failed_post thread has finished
[2025-10-12 15:07:44] 2025-10-12 19:07:16,696 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 15:07:44] 2025-10-12 19:07:16,895 | INFO     | [data] copytool_in thread has finished
[2025-10-12 15:07:44] 2025-10-12 19:07:16,896 | INFO     | [job] validate thread has finished
[2025-10-12 15:07:44] 2025-10-12 19:07:17,071 | INFO     | [job] control thread has finished
[2025-10-12 15:07:44] 2025-10-12 19:07:19,696 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 15:07:44] 2025-10-12 19:07:20,199 | INFO     | [monitor] cgroup control has ended
[2025-10-12 15:07:44] 2025-10-12 19:07:21,203 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140672802961216)>', '<ExcThread(monitor, started 140671839098624)>']
[2025-10-12 15:07:44] 2025-10-12 19:07:26,228 | INFO     | all workflow threads have been joined
[2025-10-12 15:07:44] 2025-10-12 19:07:26,228 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 15:07:44] 2025-10-12 19:07:26,229 | INFO     | traces error code: 0
[2025-10-12 15:07:44] 2025-10-12 19:07:26,230 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 15:07:44] 2025-10-12 19:07:44,352 | INFO     | PID=18909 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 15:07:44] 2025-10-12 19:07:44,352 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 15:07:44] 2025-10-12 19:07:44,353 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 15:07:44] 2025-10-12 19:07:44,353 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 15:07:44] 2025-10-12 19:07:44,353 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 15:07:44] 2025-10-12 19:07:44,353 | INFO     | [monitor] control thread has ended
[2025-10-12 15:07:44] 2025-10-12 19:07:44,460 [wrapper] ==== pilot stdout END ====
[2025-10-12 15:07:44] 2025-10-12 19:07:44,465 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 15:07:44] 2025-10-12 19:07:44,469 [wrapper] pilotpid: 18909
[2025-10-12 15:07:44] 2025-10-12 19:07:44,474 [wrapper] Pilot exit status: 0
[2025-10-12 15:07:44] 2025-10-12 19:07:44,493 [wrapper] pandaids: 6839988419 6839988419
[2025-10-12 15:07:44] 2025-10-12 19:07:44,540 [wrapper] cleanup supervisor_pilot 31658 18910
[2025-10-12 15:07:44] 2025-10-12 19:07:44,545 [wrapper] Test setup, not cleaning
[2025-10-12 15:07:44] 2025-10-12 19:07:44,550 [wrapper] apfmon messages muted
[2025-10-12 15:07:44] 2025-10-12 19:07:44,555 [wrapper] ==== wrapper stdout END ====
[2025-10-12 15:07:44] 2025-10-12 19:07:44,559 [wrapper] ==== wrapper stderr END ====
[2025-10-12 15:07:44]  *** Error codes and diagnostics ***
[2025-10-12 15:07:44]     "exeErrorCode": 0,
[2025-10-12 15:07:44]     "exeErrorDiag": "",
[2025-10-12 15:07:44]     "pilotErrorCode": 0,
[2025-10-12 15:07:44]     "pilotErrorDiag": "",
[2025-10-12 15:07:44]  *** Listing of results directory ***
[2025-10-12 15:07:44] total 630356
[2025-10-12 15:07:44] drwx------ 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-12 15:07:44] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 08:35 pilot3.tar.gz
[2025-10-12 15:07:44] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 08:45 queuedata.json
[2025-10-12 15:07:44] -rwx------ 1 boincer umatlas     36292 Oct 12 08:46 runpilot2-wrapper.sh
[2025-10-12 15:07:44] -rw-r--r-- 1 boincer umatlas       100 Oct 12 12:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 15:07:44] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 12:16 run_atlas
[2025-10-12 15:07:44] -rw-r--r-- 1 boincer umatlas       105 Oct 12 12:16 job.xml
[2025-10-12 15:07:44] -rw-r--r-- 3 boincer umatlas 220777790 Oct 12 12:16 EVNT.46676267._003810.pool.root.1
[2025-10-12 15:07:44] -rw-r--r-- 3 boincer umatlas 220777790 Oct 12 12:16 ATLAS.root_0
[2025-10-12 15:07:44] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:16 start_atlas.sh
[2025-10-12 15:07:44] drwxrwx--x 2 boincer umatlas      4096 Oct 12 12:16 shared
[2025-10-12 15:07:44] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 12:16 input.tar.gz
[2025-10-12 15:07:44] -rw-r--r-- 1 boincer umatlas         0 Oct 12 12:16 boinc_lockfile
[2025-10-12 15:07:44] -rw------- 1 boincer umatlas   1560580 Oct 12 12:16 agis_ddmendpoints.agis.ALL.json
[2025-10-12 15:07:44] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 13:09 pandaJob.out
[2025-10-12 15:07:44] -rw------- 1 boincer umatlas    975528 Oct 12 13:10 agis_schedconf.cvmfs.json
[2025-10-12 15:07:44] -rw-r--r-- 1 boincer umatlas      5910 Oct 12 15:02 init_data.xml
[2025-10-12 15:07:44] -rw------- 1 boincer umatlas 197345740 Oct 12 15:06 HITS.46676269._078512.pool.root.1
[2025-10-12 15:07:44] -rw-r--r-- 1 boincer umatlas       530 Oct 12 15:06 boinc_task_state.xml
[2025-10-12 15:07:44] -rw------- 1 boincer umatlas      1047 Oct 12 15:06 memory_monitor_summary.json
[2025-10-12 15:07:44] -rw------- 1 boincer umatlas    352124 Oct 12 15:07 log.46676269._078512.job.log.tgz.1
[2025-10-12 15:07:44] -rw------- 1 boincer umatlas      7847 Oct 12 15:07 heartbeat.json
[2025-10-12 15:07:44] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 15:07 boinc_mmap_file
[2025-10-12 15:07:44] -rw-r--r-- 1 boincer umatlas        27 Oct 12 15:07 wrapper_checkpoint.txt
[2025-10-12 15:07:44] -rw------- 1 boincer umatlas        96 Oct 12 15:07 pilot_heartbeat.json
[2025-10-12 15:07:44] -rw------- 1 boincer umatlas       745 Oct 12 15:07 pilotlog.txt
[2025-10-12 15:07:44] -rw------- 1 boincer umatlas    992106 Oct 12 15:07 log.46676269._078512.job.log.1
[2025-10-12 15:07:44] -rw------- 1 boincer umatlas       357 Oct 12 15:07 output.list
[2025-10-12 15:07:44] -rw-r--r-- 1 boincer umatlas       620 Oct 12 15:07 runtime_log
[2025-10-12 15:07:44] -rw------- 1 boincer umatlas   1361920 Oct 12 15:07 result.tar.gz
[2025-10-12 15:07:44] -rw-r--r-- 1 boincer umatlas      8788 Oct 12 15:07 runtime_log.err
[2025-10-12 15:07:44] -rw------- 1 boincer umatlas       785 Oct 12 15:07 klRMDm8dAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHrjNDm8t48fm.diag
[2025-10-12 15:07:44] -rw-r--r-- 1 boincer umatlas     22999 Oct 12 15:07 stderr.txt
[2025-10-12 15:07:44] HITS file was successfully produced:
[2025-10-12 15:07:44] -rw------- 1 boincer umatlas 197345740 Oct 12 15:06 shared/HITS.pool.root.1
[2025-10-12 15:07:44]  *** Contents of shared directory: ***
[2025-10-12 15:07:44] total 410236
[2025-10-12 15:07:44] -rw-r--r-- 3 boincer umatlas 220777790 Oct 12 12:16 ATLAS.root_0
[2025-10-12 15:07:44] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:16 start_atlas.sh
[2025-10-12 15:07:44] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 12:16 input.tar.gz
[2025-10-12 15:07:44] -rw------- 1 boincer umatlas 197345740 Oct 12 15:06 HITS.pool.root.1
[2025-10-12 15:07:44] -rw------- 1 boincer umatlas   1361920 Oct 12 15:07 result.tar.gz
15:07:45 (14851): run_atlas exited; CPU time 50436.216215
15:07:45 (14851): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN