Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:51:34 (3637365): wrapper (7.7.26015): starting
03:51:34 (3637365): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 03:51:34] Arguments: --nthreads 4
[2025-10-13 03:51:34] Threads: 4
[2025-10-13 03:51:34] Checking for CVMFS
[2025-10-13 03:51:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 03:51:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 03:51:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 03:51:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 03:51:34] 2.9.2.0 1879657 5033 98268 151643 2 57 26783721 36864001 0 130560 0 4583078 99.992 173548 770 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 03:51:34] CVMFS is ok
[2025-10-13 03:51:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 03:51:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 03:51:34] Further information can be found at the LHC@home message board.
[2025-10-13 03:51:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 03:51:34] Checking for apptainer binary...
[2025-10-13 03:51:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 03:51:34] Running /usr/bin/apptainer --version
[2025-10-13 03:51:34] apptainer version 1.4.1-1.1
[2025-10-13 03:51:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 03:51:34] iaxoA393
[2025-10-13 03:51:34] apptainer works
[2025-10-13 03:51:34] Set ATHENA_PROC_NUMBER=4
[2025-10-13 03:51:34] Set ATHENA_CORE_NUMBER=4
[2025-10-13 03:51:34] Starting ATLAS job with PandaID=6840182566
[2025-10-13 03:51:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:02:57]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:02:57] 2025-10-13 03:02:26,149 | INFO     | zombie collector waiting for pid 3647718
[2025-10-13 05:02:57] 2025-10-13 03:02:26,150 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:02:57] 2025-10-13 03:02:26,150 | INFO     | collected zombie processes
[2025-10-13 05:02:57] 2025-10-13 03:02:26,150 | INFO     | will attempt to kill all subprocesses of pid=3647718
[2025-10-13 05:02:57] 2025-10-13 03:02:26,192 | INFO     | process IDs to be killed: [3647718] (in reverse order)
[2025-10-13 05:02:57] 2025-10-13 03:02:26,223 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:02:57] 2025-10-13 03:02:26,224 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:02:57] 2025-10-13 03:02:26,225 | INFO     | did not find any defunct processes belonging to 3647718
[2025-10-13 05:02:57] 2025-10-13 03:02:26,227 | INFO     | did not find any defunct processes belonging to 3647718
[2025-10-13 05:02:57] 2025-10-13 03:02:26,227 | INFO     | ready for new job
[2025-10-13 05:02:57] 2025-10-13 03:02:26,227 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:02:57] 2025-10-13 03:02:26,227 | INFO     | ***************************************
[2025-10-13 05:02:57] 2025-10-13 03:02:26,227 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:02:57] 2025-10-13 03:02:26,228 | INFO     | ***************************************
[2025-10-13 05:02:57] 2025-10-13 03:02:26,228 | INFO     | 
[2025-10-13 05:02:57] 2025-10-13 03:02:26,228 | INFO     | architecture information:
[2025-10-13 05:02:57] 2025-10-13 03:02:26,228 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:02:57] 2025-10-13 03:02:26,241 | INFO     | cat /etc/os-release:
[2025-10-13 05:02:57] NAME="CentOS Linux"
[2025-10-13 05:02:57] VERSION="7 (Core)"
[2025-10-13 05:02:57] ID="centos"
[2025-10-13 05:02:57] ID_LIKE="rhel fedora"
[2025-10-13 05:02:57] VERSION_ID="7"
[2025-10-13 05:02:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:02:57] ANSI_COLOR="0;31"
[2025-10-13 05:02:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:02:57] HOME_URL="https://www.centos.org/"
[2025-10-13 05:02:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:02:57] 
[2025-10-13 05:02:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:02:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:02:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:02:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:02:57] 
[2025-10-13 05:02:57] 2025-10-13 03:02:26,241 | INFO     | ***************************************
[2025-10-13 05:02:57] 2025-10-13 03:02:26,744 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 05:02:57] 2025-10-13 03:02:26,761 | INFO     | sufficient remaining disk space (332877791232 B)
[2025-10-13 05:02:57] 2025-10-13 03:02:26,761 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:02:57] 2025-10-13 03:02:26,761 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:02:57] 2025-10-13 03:02:26,761 | INFO     | update_server=False
[2025-10-13 05:02:57] 2025-10-13 03:02:26,761 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:02:57] 2025-10-13 03:02:26,761 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:02:57] 2025-10-13 03:02:26,761 | INFO     | aborting loop
[2025-10-13 05:02:57] 2025-10-13 03:02:26,761 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:02:57] 2025-10-13 03:02:26,944 | INFO     | all data control threads have been joined
[2025-10-13 05:02:57] 2025-10-13 03:02:27,354 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:02:57] 2025-10-13 03:02:27,732 | INFO     | all payload control threads have been joined
[2025-10-13 05:02:57] 2025-10-13 03:02:27,767 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:02:57] 2025-10-13 03:02:27,767 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:02:57] 2025-10-13 03:02:27,768 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:02:57] 2025-10-13 03:02:27,792 | INFO     | [job] validate thread has finished
[2025-10-13 05:02:57] 2025-10-13 03:02:27,839 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:02:57] 2025-10-13 03:02:27,889 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:02:57] 2025-10-13 03:02:27,950 | INFO     | [data] control thread has finished
[2025-10-13 05:02:57] 2025-10-13 03:02:28,291 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:02:57] 2025-10-13 03:02:28,406 | INFO     | all job control threads have been joined
[2025-10-13 05:02:57] 2025-10-13 03:02:28,443 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:02:57] 2025-10-13 03:02:28,671 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:02:57] 2025-10-13 03:02:28,738 | INFO     | [payload] control thread has finished
[2025-10-13 05:02:57] 2025-10-13 03:02:28,882 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:02:57] 2025-10-13 03:02:29,360 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:02:57] 2025-10-13 03:02:29,365 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:02:57] 2025-10-13 03:02:29,411 | INFO     | [job] control thread has finished
[2025-10-13 05:02:57] 2025-10-13 03:02:31,894 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:02:57] 2025-10-13 03:02:37,701 | INFO     | job.realtimelogging is not enabled
[2025-10-13 05:02:57] 2025-10-13 03:02:38,706 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:02:57] 2025-10-13 03:02:48,095 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:02:57] 2025-10-13 03:02:48,332 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140377408939840)>', '<ExcThread(monitor, started 140376593635072)>']
[2025-10-13 05:02:57] 2025-10-13 03:02:53,358 | INFO     | all workflow threads have been joined
[2025-10-13 05:02:57] 2025-10-13 03:02:53,358 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:02:57] 2025-10-13 03:02:53,358 | INFO     | traces error code: 0
[2025-10-13 05:02:57] 2025-10-13 03:02:53,359 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:02:57] 2025-10-13 03:02:56,875 | INFO     | PID=3641147 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 05:02:57] 2025-10-13 03:02:56,875 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:02:57] 2025-10-13 03:02:56,875 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:02:57] 2025-10-13 03:02:56,875 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:02:57] 2025-10-13 03:02:56,875 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:02:57] 2025-10-13 03:02:56,875 | INFO     | [monitor] control thread has ended
[2025-10-13 05:02:57] 2025-10-13 03:02:56,939 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:02:57] 2025-10-13 03:02:56,943 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:02:57] 2025-10-13 03:02:56,947 [wrapper] pilotpid: 3641147
[2025-10-13 05:02:57] 2025-10-13 03:02:56,951 [wrapper] Pilot exit status: 0
[2025-10-13 05:02:57] 2025-10-13 03:02:56,962 [wrapper] pandaids: 6840182566
[2025-10-13 05:02:57] 2025-10-13 03:02:56,982 [wrapper] cleanup supervisor_pilot 3657427 3641148
[2025-10-13 05:02:57] 2025-10-13 03:02:56,985 [wrapper] Test setup, not cleaning
[2025-10-13 05:02:57] 2025-10-13 03:02:56,989 [wrapper] apfmon messages muted
[2025-10-13 05:02:57] 2025-10-13 03:02:56,992 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:02:57] 2025-10-13 03:02:56,996 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:02:57]  *** Error codes and diagnostics ***
[2025-10-13 05:02:57]     "exeErrorCode": 0,
[2025-10-13 05:02:57]     "exeErrorDiag": "",
[2025-10-13 05:02:57]     "pilotErrorCode": 0,
[2025-10-13 05:02:57]     "pilotErrorDiag": "",
[2025-10-13 05:02:57]  *** Listing of results directory ***
[2025-10-13 05:02:57] total 412772
[2025-10-13 05:02:57] -rw-r--r-- 1 boinc boinc    557409 Oct 12 16:30 pilot3.tar.gz
[2025-10-13 05:02:57] -rwx------ 1 boinc boinc     36292 Oct 12 16:53 runpilot2-wrapper.sh
[2025-10-13 05:02:57] -rw-r--r-- 1 boinc boinc      5112 Oct 12 16:53 queuedata.json
[2025-10-13 05:02:57] -rw-r--r-- 1 boinc boinc       100 Oct 13 03:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:02:57] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 03:51 run_atlas
[2025-10-13 05:02:57] -rw-r--r-- 1 boinc boinc       105 Oct 13 03:51 job.xml
[2025-10-13 05:02:57] -rw-r--r-- 2 boinc boinc 220820357 Oct 13 03:51 EVNT.46676267._004540.pool.root.1
[2025-10-13 05:02:57] -rw-r--r-- 2 boinc boinc    569685 Oct 13 03:51 input.tar.gz
[2025-10-13 05:02:57] -rw-r--r-- 2 boinc boinc     15120 Oct 13 03:51 start_atlas.sh
[2025-10-13 05:02:57] drwxrwx--x 2 boinc boinc      4096 Oct 13 03:51 shared
[2025-10-13 05:02:57] -rw-r--r-- 1 boinc boinc         0 Oct 13 03:51 boinc_setup_complete
[2025-10-13 05:02:57] -rw-r--r-- 1 boinc boinc      6372 Oct 13 03:51 init_data.xml
[2025-10-13 05:02:57] -rw-r--r-- 1 boinc boinc         0 Oct 13 03:51 boinc_lockfile
[2025-10-13 05:02:57] -rw-r--r-- 1 boinc boinc      2550 Oct 13 03:51 pandaJob.out
[2025-10-13 05:02:57] -rw------- 1 boinc boinc    975595 Oct 13 03:51 agis_schedconf.cvmfs.json
[2025-10-13 05:02:57] -rw------- 1 boinc boinc   1560580 Oct 13 03:51 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:02:57] drwx------ 5 boinc boinc      4096 Oct 13 03:51 pilot3
[2025-10-13 05:02:57] -rw-r--r-- 1 boinc boinc       529 Oct 13 05:01 boinc_task_state.xml
[2025-10-13 05:02:57] -rw------- 1 boinc boinc 196178657 Oct 13 05:02 HITS.46676269._081381.pool.root.1
[2025-10-13 05:02:57] -rw------- 1 boinc boinc        95 Oct 13 05:02 pilot_heartbeat.json
[2025-10-13 05:02:57] -rw------- 1 boinc boinc      1025 Oct 13 05:02 memory_monitor_summary.json
[2025-10-13 05:02:57] -rw------- 1 boinc boinc    265367 Oct 13 05:02 log.46676269._081381.job.log.tgz.1
[2025-10-13 05:02:57] -rw------- 1 boinc boinc      7768 Oct 13 05:02 heartbeat.json
[2025-10-13 05:02:57] -rw-r--r-- 1 boinc boinc      8192 Oct 13 05:02 boinc_mmap_file
[2025-10-13 05:02:57] -rw-r--r-- 1 boinc boinc        27 Oct 13 05:02 wrapper_checkpoint.txt
[2025-10-13 05:02:57] -rw------- 1 boinc boinc       747 Oct 13 05:02 pilotlog.txt
[2025-10-13 05:02:57] -rw------- 1 boinc boinc    630782 Oct 13 05:02 log.46676269._081381.job.log.1
[2025-10-13 05:02:57] -rw------- 1 boinc boinc       357 Oct 13 05:02 output.list
[2025-10-13 05:02:57] -rw-r--r-- 1 boinc boinc       620 Oct 13 05:02 runtime_log
[2025-10-13 05:02:57] -rw------- 1 boinc boinc    911360 Oct 13 05:02 result.tar.gz
[2025-10-13 05:02:57] -rw-r--r-- 1 boinc boinc      8787 Oct 13 05:02 runtime_log.err
[2025-10-13 05:02:57] -rw------- 1 boinc boinc       660 Oct 13 05:02 TNANDmdcCS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmmAUMDm7MFH6n.diag
[2025-10-13 05:02:57] -rw-r--r-- 1 boinc boinc     10610 Oct 13 05:02 stderr.txt
[2025-10-13 05:02:57] HITS file was successfully produced:
[2025-10-13 05:02:57] -rw------- 1 boinc boinc 196178657 Oct 13 05:02 shared/HITS.pool.root.1
[2025-10-13 05:02:57]  *** Contents of shared directory: ***
[2025-10-13 05:02:57] total 408708
[2025-10-13 05:02:57] -rw-r--r-- 2 boinc boinc 220820357 Oct 13 03:51 ATLAS.root_0
[2025-10-13 05:02:57] -rw-r--r-- 2 boinc boinc    569685 Oct 13 03:51 input.tar.gz
[2025-10-13 05:02:57] -rw-r--r-- 2 boinc boinc     15120 Oct 13 03:51 start_atlas.sh
[2025-10-13 05:02:57] -rw------- 1 boinc boinc 196178657 Oct 13 05:02 HITS.pool.root.1
[2025-10-13 05:02:57] -rw------- 1 boinc boinc    911360 Oct 13 05:02 result.tar.gz
05:02:58 (3637365): run_atlas exited; CPU time 15909.701446
05:02:58 (3637365): called boinc_finish(0)

</stderr_txt>
]]>

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