Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:46:41 (2901051): wrapper (7.7.26015): starting
03:46:41 (2901051): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 03:46:41] Arguments: --nthreads 3
[2025-10-13 03:46:41] Threads: 3
[2025-10-13 03:46:41] Checking for CVMFS
[2025-10-13 03:46:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 03:46:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 03:46:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 03:46:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 03:46:42] 2.9.2.0 1484052 5025 68548 151643 2 57 28964498 36864001 0 130560 0 3717161 99.990 175658 936 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 03:46:42] CVMFS is ok
[2025-10-13 03:46:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 03:46:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 03:46:42] Further information can be found at the LHC@home message board.
[2025-10-13 03:46:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 03:46:42] Checking for apptainer binary...
[2025-10-13 03:46:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 03:46:42] Running /usr/bin/apptainer --version
[2025-10-13 03:46:42] apptainer version 1.4.1-1.1
[2025-10-13 03:46:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 03:46:42] magicA244b
[2025-10-13 03:46:42] apptainer works
[2025-10-13 03:46:42] Set ATHENA_PROC_NUMBER=3
[2025-10-13 03:46:42] Set ATHENA_CORE_NUMBER=3
[2025-10-13 03:46:42] Starting ATLAS job with PandaID=6841763817
[2025-10-13 03:46:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:09:05]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:09:05] 2025-10-13 03:08:39,033 | INFO     | zombie collector waiting for pid 2911220
[2025-10-13 05:09:05] 2025-10-13 03:08:39,033 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:09:05] 2025-10-13 03:08:39,033 | INFO     | collected zombie processes
[2025-10-13 05:09:05] 2025-10-13 03:08:39,033 | INFO     | will attempt to kill all subprocesses of pid=2911220
[2025-10-13 05:09:05] 2025-10-13 03:08:39,071 | INFO     | process IDs to be killed: [2911220] (in reverse order)
[2025-10-13 05:09:05] 2025-10-13 03:08:39,095 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:09:05] 2025-10-13 03:08:39,095 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:09:05] 2025-10-13 03:08:39,096 | INFO     | did not find any defunct processes belonging to 2911220
[2025-10-13 05:09:05] 2025-10-13 03:08:39,096 | INFO     | did not find any defunct processes belonging to 2911220
[2025-10-13 05:09:05] 2025-10-13 03:08:39,097 | INFO     | ready for new job
[2025-10-13 05:09:05] 2025-10-13 03:08:39,097 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:09:05] 2025-10-13 03:08:39,097 | INFO     | ***************************************
[2025-10-13 05:09:05] 2025-10-13 03:08:39,097 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:09:05] 2025-10-13 03:08:39,097 | INFO     | ***************************************
[2025-10-13 05:09:05] 2025-10-13 03:08:39,097 | INFO     | 
[2025-10-13 05:09:05] 2025-10-13 03:08:39,098 | INFO     | architecture information:
[2025-10-13 05:09:05] 2025-10-13 03:08:39,098 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:09:05] 2025-10-13 03:08:39,107 | INFO     | cat /etc/os-release:
[2025-10-13 05:09:05] NAME="CentOS Linux"
[2025-10-13 05:09:05] VERSION="7 (Core)"
[2025-10-13 05:09:05] ID="centos"
[2025-10-13 05:09:05] ID_LIKE="rhel fedora"
[2025-10-13 05:09:05] VERSION_ID="7"
[2025-10-13 05:09:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:09:05] ANSI_COLOR="0;31"
[2025-10-13 05:09:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:09:05] HOME_URL="https://www.centos.org/"
[2025-10-13 05:09:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:09:05] 
[2025-10-13 05:09:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:09:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:09:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:09:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:09:05] 
[2025-10-13 05:09:05] 2025-10-13 03:08:39,107 | INFO     | ***************************************
[2025-10-13 05:09:05] 2025-10-13 03:08:39,610 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 05:09:05] 2025-10-13 03:08:39,623 | INFO     | sufficient remaining disk space (331128766464 B)
[2025-10-13 05:09:05] 2025-10-13 03:08:39,623 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:09:05] 2025-10-13 03:08:39,623 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:09:05] 2025-10-13 03:08:39,624 | INFO     | update_server=False
[2025-10-13 05:09:05] 2025-10-13 03:08:39,624 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:09:05] 2025-10-13 03:08:39,624 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:09:05] 2025-10-13 03:08:39,624 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:09:05] 2025-10-13 03:08:39,624 | INFO     | aborting loop
[2025-10-13 05:09:05] 2025-10-13 03:08:39,624 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 05:09:05] 2025-10-13 03:08:39,624 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:09:05] 2025-10-13 03:08:39,624 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:09:05] 2025-10-13 03:08:39,624 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:09:05] 2025-10-13 03:08:39,676 | INFO     | all data control threads have been joined
[2025-10-13 05:09:05] 2025-10-13 03:08:39,853 | INFO     | all payload control threads have been joined
[2025-10-13 05:09:05] 2025-10-13 03:08:39,924 | INFO     | all job control threads have been joined
[2025-10-13 05:09:05] 2025-10-13 03:08:40,555 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:09:05] 2025-10-13 03:08:40,568 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:09:05] 2025-10-13 03:08:40,629 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:09:05] 2025-10-13 03:08:40,630 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:09:05] 2025-10-13 03:08:40,630 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:09:05] 2025-10-13 03:08:40,682 | INFO     | [data] control thread has finished
[2025-10-13 05:09:05] 2025-10-13 03:08:40,859 | INFO     | [payload] control thread has finished
[2025-10-13 05:09:05] 2025-10-13 03:08:40,930 | INFO     | [job] control thread has finished
[2025-10-13 05:09:05] 2025-10-13 03:08:41,114 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:09:05] 2025-10-13 03:08:41,179 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:09:05] 2025-10-13 03:08:41,556 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:09:05] 2025-10-13 03:08:41,829 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:09:05] 2025-10-13 03:08:41,876 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:09:05] 2025-10-13 03:08:42,039 | INFO     | [job] validate thread has finished
[2025-10-13 05:09:05] 2025-10-13 03:08:42,056 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:09:05] 2025-10-13 03:08:42,131 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:09:05] 2025-10-13 03:08:42,561 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:09:05] 2025-10-13 03:08:44,574 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:09:05] 2025-10-13 03:08:59,041 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:09:05] 2025-10-13 03:08:59,808 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139702444828480)>', '<ExcThread(monitor, started 139702090835712)>']
[2025-10-13 05:09:05] 2025-10-13 03:09:00,732 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:09:05] 2025-10-13 03:09:00,732 | INFO     | [monitor] control thread has ended
[2025-10-13 05:09:05] 2025-10-13 03:09:04,834 | INFO     | all workflow threads have been joined
[2025-10-13 05:09:05] 2025-10-13 03:09:04,834 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:09:05] 2025-10-13 03:09:04,835 | INFO     | traces error code: 0
[2025-10-13 05:09:05] 2025-10-13 03:09:04,835 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:09:05] 2025-10-13 03:09:04,882 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:09:05] 2025-10-13 03:09:04,885 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:09:05] 2025-10-13 03:09:04,888 [wrapper] pilotpid: 2904776
[2025-10-13 05:09:05] 2025-10-13 03:09:04,891 [wrapper] Pilot exit status: 0
[2025-10-13 05:09:05] 2025-10-13 03:09:04,898 [wrapper] pandaids: 6841763817
[2025-10-13 05:09:05] 2025-10-13 03:09:04,914 [wrapper] cleanup supervisor_pilot 2923923 2904777
[2025-10-13 05:09:05] 2025-10-13 03:09:04,918 [wrapper] Test setup, not cleaning
[2025-10-13 05:09:05] 2025-10-13 03:09:04,920 [wrapper] apfmon messages muted
[2025-10-13 05:09:05] 2025-10-13 03:09:04,923 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:09:05] 2025-10-13 03:09:04,926 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:09:05]  *** Error codes and diagnostics ***
[2025-10-13 05:09:05]     "exeErrorCode": 0,
[2025-10-13 05:09:05]     "exeErrorDiag": "",
[2025-10-13 05:09:05]     "pilotErrorCode": 0,
[2025-10-13 05:09:05]     "pilotErrorDiag": "",
[2025-10-13 05:09:05]  *** Listing of results directory ***
[2025-10-13 05:09:05] total 388952
[2025-10-13 05:09:05] -rw-r--r-- 1 boinc boinc    557409 Oct 12 14:10 pilot3.tar.gz
[2025-10-13 05:09:05] -rw-r--r-- 1 boinc boinc      5112 Oct 12 14:15 queuedata.json
[2025-10-13 05:09:05] -rwx------ 1 boinc boinc     36292 Oct 12 14:15 runpilot2-wrapper.sh
[2025-10-13 05:09:05] -rw-r--r-- 1 boinc boinc       100 Oct 13 03:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:09:05] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 03:46 run_atlas
[2025-10-13 05:09:05] -rw-r--r-- 1 boinc boinc       105 Oct 13 03:46 job.xml
[2025-10-13 05:09:05] -rw-r--r-- 2 boinc boinc 212408719 Oct 13 03:46 EVNT.46376901._004214.pool.root.1
[2025-10-13 05:09:05] -rw-r--r-- 2 boinc boinc    569671 Oct 13 03:46 input.tar.gz
[2025-10-13 05:09:05] -rw-r--r-- 2 boinc boinc     15120 Oct 13 03:46 start_atlas.sh
[2025-10-13 05:09:05] drwxrwx--x 2 boinc boinc      4096 Oct 13 03:46 shared
[2025-10-13 05:09:05] -rw-r--r-- 1 boinc boinc         0 Oct 13 03:46 boinc_setup_complete
[2025-10-13 05:09:05] -rw-r--r-- 1 boinc boinc      6200 Oct 13 03:46 init_data.xml
[2025-10-13 05:09:05] -rw-r--r-- 1 boinc boinc         0 Oct 13 03:46 boinc_lockfile
[2025-10-13 05:09:05] -rw-r--r-- 1 boinc boinc      2519 Oct 13 03:46 pandaJob.out
[2025-10-13 05:09:05] -rw------- 1 boinc boinc    975595 Oct 13 03:46 agis_schedconf.cvmfs.json
[2025-10-13 05:09:05] -rw------- 1 boinc boinc   1560580 Oct 13 03:46 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:09:05] drwx------ 5 boinc boinc      4096 Oct 13 03:46 pilot3
[2025-10-13 05:09:05] -rw------- 1 boinc boinc 180061278 Oct 13 05:08 HITS.46376905._136420.pool.root.1
[2025-10-13 05:09:05] -rw-r--r-- 1 boinc boinc       529 Oct 13 05:08 boinc_task_state.xml
[2025-10-13 05:09:05] -rw------- 1 boinc boinc        95 Oct 13 05:08 pilot_heartbeat.json
[2025-10-13 05:09:05] -rw------- 1 boinc boinc      1019 Oct 13 05:08 memory_monitor_summary.json
[2025-10-13 05:09:05] -rw------- 1 boinc boinc    241078 Oct 13 05:08 log.46376905._136420.job.log.tgz.1
[2025-10-13 05:09:05] -rw------- 1 boinc boinc      7786 Oct 13 05:08 heartbeat.json
[2025-10-13 05:09:05] -rw-r--r-- 1 boinc boinc        27 Oct 13 05:09 wrapper_checkpoint.txt
[2025-10-13 05:09:05] -rw-r--r-- 1 boinc boinc      8192 Oct 13 05:09 boinc_mmap_file
[2025-10-13 05:09:05] -rw------- 1 boinc boinc      4556 Oct 13 05:09 pilotlog.txt
[2025-10-13 05:09:05] -rw------- 1 boinc boinc    720768 Oct 13 05:09 log.46376905._136420.job.log.1
[2025-10-13 05:09:05] -rw------- 1 boinc boinc       357 Oct 13 05:09 output.list
[2025-10-13 05:09:05] -rw-r--r-- 1 boinc boinc       620 Oct 13 05:09 runtime_log
[2025-10-13 05:09:05] -rw------- 1 boinc boinc    983040 Oct 13 05:09 result.tar.gz
[2025-10-13 05:09:05] -rw------- 1 boinc boinc       662 Oct 13 05:09 u2BNDm999R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmhsTMDmKu98an.diag
[2025-10-13 05:09:05] -rw-r--r-- 1 boinc boinc      8797 Oct 13 05:09 runtime_log.err
[2025-10-13 05:09:05] -rw-r--r-- 1 boinc boinc     10440 Oct 13 05:09 stderr.txt
[2025-10-13 05:09:05] HITS file was successfully produced:
[2025-10-13 05:09:05] -rw------- 1 boinc boinc 180061278 Oct 13 05:08 shared/HITS.pool.root.1
[2025-10-13 05:09:05]  *** Contents of shared directory: ***
[2025-10-13 05:09:05] total 384820
[2025-10-13 05:09:05] -rw-r--r-- 2 boinc boinc 212408719 Oct 13 03:46 ATLAS.root_0
[2025-10-13 05:09:05] -rw-r--r-- 2 boinc boinc    569671 Oct 13 03:46 input.tar.gz
[2025-10-13 05:09:05] -rw-r--r-- 2 boinc boinc     15120 Oct 13 03:46 start_atlas.sh
[2025-10-13 05:09:05] -rw------- 1 boinc boinc 180061278 Oct 13 05:08 HITS.pool.root.1
[2025-10-13 05:09:05] -rw------- 1 boinc boinc    983040 Oct 13 05:09 result.tar.gz
05:09:06 (2901051): run_atlas exited; CPU time 13995.471045
05:09:06 (2901051): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN