Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:41:01 (3171497): wrapper (7.7.26015): starting
08:41:01 (3171497): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 08:41:01] Arguments: --nthreads 3
[2025-10-13 08:41:01] Threads: 3
[2025-10-13 08:41:01] Checking for CVMFS
[2025-10-13 08:41:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 08:41:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 08:41:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 08:41:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 08:41:01] 2.9.2.0 1564373 5359 87488 151652 1 56 4846915 36864001 0 130560 0 4208103 99.991 187865 847 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 08:41:01] CVMFS is ok
[2025-10-13 08:41:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 08:41:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 08:41:01] Further information can be found at the LHC@home message board.
[2025-10-13 08:41:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 08:41:01] Checking for apptainer binary...
[2025-10-13 08:41:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 08:41:01] Running /usr/bin/apptainer --version
[2025-10-13 08:41:01] apptainer version 1.4.1-1.1
[2025-10-13 08:41:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 08:41:01] thA371
[2025-10-13 08:41:01] apptainer works
[2025-10-13 08:41:01] Set ATHENA_PROC_NUMBER=3
[2025-10-13 08:41:01] Set ATHENA_CORE_NUMBER=3
[2025-10-13 08:41:01] Starting ATLAS job with PandaID=6839868633
[2025-10-13 08:41:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 10:06:19]  *** The last 200 lines of the pilot log: ***
[2025-10-13 10:06:19] 2025-10-13 08:05:56,015 | INFO     | collected zombie processes
[2025-10-13 10:06:19] 2025-10-13 08:05:56,015 | INFO     | will attempt to kill all subprocesses of pid=3181659
[2025-10-13 10:06:19] 2025-10-13 08:05:56,058 | INFO     | process IDs to be killed: [3181659] (in reverse order)
[2025-10-13 10:06:19] 2025-10-13 08:05:56,083 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 10:06:19] 2025-10-13 08:05:56,083 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 10:06:19] 2025-10-13 08:05:56,084 | INFO     | did not find any defunct processes belonging to 3181659
[2025-10-13 10:06:19] 2025-10-13 08:05:56,086 | INFO     | did not find any defunct processes belonging to 3181659
[2025-10-13 10:06:19] 2025-10-13 08:05:56,086 | INFO     | ready for new job
[2025-10-13 10:06:19] 2025-10-13 08:05:56,086 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 10:06:19] 2025-10-13 08:05:56,086 | INFO     | ***************************************
[2025-10-13 10:06:19] 2025-10-13 08:05:56,086 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 10:06:19] 2025-10-13 08:05:56,086 | INFO     | ***************************************
[2025-10-13 10:06:19] 2025-10-13 08:05:56,086 | INFO     | 
[2025-10-13 10:06:19] 2025-10-13 08:05:56,087 | INFO     | architecture information:
[2025-10-13 10:06:19] 2025-10-13 08:05:56,087 | INFO     | executing command: cat /etc/os-release
[2025-10-13 10:06:19] 2025-10-13 08:05:56,095 | INFO     | cat /etc/os-release:
[2025-10-13 10:06:19] NAME="CentOS Linux"
[2025-10-13 10:06:19] VERSION="7 (Core)"
[2025-10-13 10:06:19] ID="centos"
[2025-10-13 10:06:19] ID_LIKE="rhel fedora"
[2025-10-13 10:06:19] VERSION_ID="7"
[2025-10-13 10:06:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 10:06:19] ANSI_COLOR="0;31"
[2025-10-13 10:06:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 10:06:19] HOME_URL="https://www.centos.org/"
[2025-10-13 10:06:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 10:06:19] 
[2025-10-13 10:06:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 10:06:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 10:06:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 10:06:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 10:06:19] 
[2025-10-13 10:06:19] 2025-10-13 08:05:56,095 | INFO     | ***************************************
[2025-10-13 10:06:19] 2025-10-13 08:05:56,599 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 10:06:19] 2025-10-13 08:05:56,611 | INFO     | sufficient remaining disk space (354932490240 B)
[2025-10-13 10:06:19] 2025-10-13 08:05:56,612 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 10:06:19] 2025-10-13 08:05:56,612 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 10:06:19] 2025-10-13 08:05:56,612 | INFO     | update_server=False
[2025-10-13 10:06:19] 2025-10-13 08:05:56,612 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 10:06:19] 2025-10-13 08:05:56,612 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 10:06:19] 2025-10-13 08:05:56,612 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 10:06:19] 2025-10-13 08:05:56,612 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 10:06:19] 2025-10-13 08:05:56,612 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 10:06:19] 2025-10-13 08:05:56,612 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:06:19] 2025-10-13 08:05:56,612 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 10:06:19] 2025-10-13 08:05:56,612 | INFO     | aborting loop
[2025-10-13 10:06:19] 2025-10-13 08:05:56,890 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 10:06:19] 2025-10-13 08:05:57,260 | INFO     | all payload control threads have been joined
[2025-10-13 10:06:19] 2025-10-13 08:05:57,618 | INFO     | [job] retrieve thread has finished
[2025-10-13 10:06:19] 2025-10-13 08:05:57,618 | INFO     | [job] queue monitor thread has finished
[2025-10-13 10:06:19] 2025-10-13 08:05:57,618 | INFO     | [job] job monitor thread has finished
[2025-10-13 10:06:19] 2025-10-13 08:05:57,657 | INFO     | all data control threads have been joined
[2025-10-13 10:06:19] 2025-10-13 08:05:57,877 | INFO     | all job control threads have been joined
[2025-10-13 10:06:19] 2025-10-13 08:05:58,044 | INFO     | [payload] validate_post thread has finished
[2025-10-13 10:06:19] 2025-10-13 08:05:58,266 | INFO     | [payload] control thread has finished
[2025-10-13 10:06:19] 2025-10-13 08:05:58,527 | INFO     | [data] copytool_in thread has finished
[2025-10-13 10:06:19] 2025-10-13 08:05:58,663 | INFO     | [data] control thread has finished
[2025-10-13 10:06:19] 2025-10-13 08:05:58,823 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 10:06:19] 2025-10-13 08:05:58,882 | INFO     | [job] control thread has finished
[2025-10-13 10:06:19] 2025-10-13 08:05:58,896 | INFO     | [data] copytool_out thread has finished
[2025-10-13 10:06:19] 2025-10-13 08:05:58,915 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 10:06:19] 2025-10-13 08:05:59,006 | INFO     | [job] validate thread has finished
[2025-10-13 10:06:19] 2025-10-13 08:05:59,047 | INFO     | [payload] failed_post thread has finished
[2025-10-13 10:06:19] 2025-10-13 08:05:59,060 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 10:06:19] 2025-10-13 08:05:59,072 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 10:06:19] 2025-10-13 08:06:02,922 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 10:06:19] 2025-10-13 08:06:07,145 | INFO     | job.realtimelogging is not enabled
[2025-10-13 10:06:19] 2025-10-13 08:06:08,151 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 10:06:19] 2025-10-13 08:06:12,675 | INFO     | [monitor] cgroup control has ended
[2025-10-13 10:06:19] 2025-10-13 08:06:14,320 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140394439862080)>', '<ExcThread(monitor, started 140393790289664)>']
[2025-10-13 10:06:19] 2025-10-13 08:06:14,708 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 10:06:19] 2025-10-13 08:06:14,708 | INFO     | [monitor] control thread has ended
[2025-10-13 10:06:19] 2025-10-13 08:06:19,346 | INFO     | all workflow threads have been joined
[2025-10-13 10:06:19] 2025-10-13 08:06:19,346 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 10:06:19] 2025-10-13 08:06:19,347 | INFO     | traces error code: 0
[2025-10-13 10:06:19] 2025-10-13 08:06:19,347 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 10:06:19] 2025-10-13 08:06:19,398 [wrapper] ==== pilot stdout END ====
[2025-10-13 10:06:19] 2025-10-13 08:06:19,401 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 10:06:19] 2025-10-13 08:06:19,403 [wrapper] pilotpid: 3175218
[2025-10-13 10:06:19] 2025-10-13 08:06:19,405 [wrapper] Pilot exit status: 0
[2025-10-13 10:06:19] 2025-10-13 08:06:19,412 [wrapper] pandaids: 6839868633
[2025-10-13 10:06:19] 2025-10-13 08:06:19,428 [wrapper] cleanup supervisor_pilot 3194637 3175219
[2025-10-13 10:06:19] 2025-10-13 08:06:19,431 [wrapper] Test setup, not cleaning
[2025-10-13 10:06:19] 2025-10-13 08:06:19,433 [wrapper] apfmon messages muted
[2025-10-13 10:06:19] 2025-10-13 08:06:19,435 [wrapper] ==== wrapper stdout END ====
[2025-10-13 10:06:19] 2025-10-13 08:06:19,438 [wrapper] ==== wrapper stderr END ====
[2025-10-13 10:06:19]  *** Error codes and diagnostics ***
[2025-10-13 10:06:19]     "exeErrorCode": 0,
[2025-10-13 10:06:19]     "exeErrorDiag": "",
[2025-10-13 10:06:19]     "pilotErrorCode": 0,
[2025-10-13 10:06:19]     "pilotErrorDiag": "",
[2025-10-13 10:06:19]  *** Listing of results directory ***
[2025-10-13 10:06:19] total 414904
[2025-10-13 10:06:19] -rw-r--r-- 1 boinc boinc    557409 Oct 12 12:57 pilot3.tar.gz
[2025-10-13 10:06:19] -rw-r--r-- 1 boinc boinc      5112 Oct 12 13:02 queuedata.json
[2025-10-13 10:06:19] -rwx------ 1 boinc boinc     36292 Oct 12 13:02 runpilot2-wrapper.sh
[2025-10-13 10:06:19] -rw-r--r-- 1 boinc boinc       100 Oct 13 08:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 10:06:19] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 08:41 run_atlas
[2025-10-13 10:06:19] -rw-r--r-- 1 boinc boinc       105 Oct 13 08:41 job.xml
[2025-10-13 10:06:19] -rw-r--r-- 2 boinc boinc 218801603 Oct 13 08:41 EVNT.46676267._003651.pool.root.1
[2025-10-13 10:06:19] drwxrwx--x 2 boinc boinc      4096 Oct 13 08:41 shared
[2025-10-13 10:06:19] -rw-r--r-- 2 boinc boinc    569683 Oct 13 08:41 input.tar.gz
[2025-10-13 10:06:19] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:41 start_atlas.sh
[2025-10-13 10:06:19] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:41 boinc_setup_complete
[2025-10-13 10:06:19] -rw-r--r-- 1 boinc boinc      6438 Oct 13 08:41 init_data.xml
[2025-10-13 10:06:19] -rw-r--r-- 1 boinc boinc         0 Oct 13 08:41 boinc_lockfile
[2025-10-13 10:06:19] -rw-r--r-- 1 boinc boinc      2550 Oct 13 08:41 pandaJob.out
[2025-10-13 10:06:19] -rw------- 1 boinc boinc    972849 Oct 13 08:41 agis_schedconf.cvmfs.json
[2025-10-13 10:06:19] -rw------- 1 boinc boinc   1560580 Oct 13 08:41 agis_ddmendpoints.agis.ALL.json
[2025-10-13 10:06:19] drwx------ 5 boinc boinc      4096 Oct 13 08:41 pilot3
[2025-10-13 10:06:19] -rw-r--r-- 1 boinc boinc       529 Oct 13 10:05 boinc_task_state.xml
[2025-10-13 10:06:19] -rw------- 1 boinc boinc 200160249 Oct 13 10:05 HITS.46676269._076582.pool.root.1
[2025-10-13 10:06:19] -rw------- 1 boinc boinc        95 Oct 13 10:05 pilot_heartbeat.json
[2025-10-13 10:06:19] -rw------- 1 boinc boinc      1020 Oct 13 10:05 memory_monitor_summary.json
[2025-10-13 10:06:19] -rw------- 1 boinc boinc    259155 Oct 13 10:05 log.46676269._076582.job.log.tgz.1
[2025-10-13 10:06:19] -rw-r--r-- 1 boinc boinc        27 Oct 13 10:05 wrapper_checkpoint.txt
[2025-10-13 10:06:19] -rw-r--r-- 1 boinc boinc      8192 Oct 13 10:05 boinc_mmap_file
[2025-10-13 10:06:19] -rw------- 1 boinc boinc      7763 Oct 13 10:05 heartbeat.json
[2025-10-13 10:06:19] -rw------- 1 boinc boinc      4628 Oct 13 10:06 pilotlog.txt
[2025-10-13 10:06:19] -rw------- 1 boinc boinc    745461 Oct 13 10:06 log.46676269._076582.job.log.1
[2025-10-13 10:06:19] -rw------- 1 boinc boinc       357 Oct 13 10:06 output.list
[2025-10-13 10:06:19] -rw-r--r-- 1 boinc boinc       620 Oct 13 10:06 runtime_log
[2025-10-13 10:06:19] -rw------- 1 boinc boinc   1024000 Oct 13 10:06 result.tar.gz
[2025-10-13 10:06:19] -rw-r--r-- 1 boinc boinc      8777 Oct 13 10:06 runtime_log.err
[2025-10-13 10:06:19] -rw------- 1 boinc boinc       658 Oct 13 10:06 9jPLDms18R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6XjNDm9IfQPm.diag
[2025-10-13 10:06:19] -rw-r--r-- 1 boinc boinc     10296 Oct 13 10:06 stderr.txt
[2025-10-13 10:06:19] HITS file was successfully produced:
[2025-10-13 10:06:19] -rw------- 1 boinc boinc 200160249 Oct 13 10:05 shared/HITS.pool.root.1
[2025-10-13 10:06:19]  *** Contents of shared directory: ***
[2025-10-13 10:06:19] total 410732
[2025-10-13 10:06:19] -rw-r--r-- 2 boinc boinc 218801603 Oct 13 08:41 ATLAS.root_0
[2025-10-13 10:06:19] -rw-r--r-- 2 boinc boinc    569683 Oct 13 08:41 input.tar.gz
[2025-10-13 10:06:19] -rw-r--r-- 2 boinc boinc     15120 Oct 13 08:41 start_atlas.sh
[2025-10-13 10:06:19] -rw------- 1 boinc boinc 200160249 Oct 13 10:05 HITS.pool.root.1
[2025-10-13 10:06:19] -rw------- 1 boinc boinc   1024000 Oct 13 10:06 result.tar.gz
10:06:20 (3171497): run_atlas exited; CPU time 14637.923436
10:06:20 (3171497): called boinc_finish(0)

</stderr_txt>
]]>

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