Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:09:25 (10347): wrapper (7.7.26015): starting
12:09:25 (10347): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 12:09:25] Arguments: --nthreads 12
[2025-10-12 12:09:25] Threads: 12
[2025-10-12 12:09:25] Checking for CVMFS
[2025-10-12 12:09:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:09:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:09:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:09:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:09:25] 2.11.2.0 2924 223057 103604 151625 2 57 15543110 20275201 1 130560 4 110228303 99.984 13802764 12961 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 12:09:25] CVMFS is ok
[2025-10-12 12:09:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:09:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:09:25] Further information can be found at the LHC@home message board.
[2025-10-12 12:09:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:09:25] Checking for apptainer binary...
[2025-10-12 12:09:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:09:25] Running /usr/bin/apptainer --version
[2025-10-12 12:09:25] apptainer version 1.3.2-1.el7
[2025-10-12 12:09:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:09:27] c-205-28.aglt2.org
[2025-10-12 12:09:27] apptainer works
[2025-10-12 12:09:27] Set ATHENA_PROC_NUMBER=12
[2025-10-12 12:09:27] Set ATHENA_CORE_NUMBER=12
[2025-10-12 12:09:27] Starting ATLAS job with PandaID=6840182427
[2025-10-12 12:09:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:22:00]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:22:00]  protocol_id=None
[2025-10-12 13:22:00]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 13:22:00]  replicas=None
[2025-10-12 13:22:00]  scope=mc23_13p6TeV
[2025-10-12 13:22:00]  status=None
[2025-10-12 13:22:00]  status_code=0
[2025-10-12 13:22:00]  storage_token=
[2025-10-12 13:22:00]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6840182427/log.46676269._081272.job.log.tgz.1
[2025-10-12 13:22:00]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/55/7d/log.46676269._081272.job.log.tgz.1
[2025-10-12 13:22:00]  workdir=None
[2025-10-12 13:22:00] ]
[2025-10-12 13:22:00] 2025-10-12 17:21:22,963 | INFO     | transferring file log.46676269._081272.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6840182427/log.46676269._081272.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 13:22:00] 2025-10-12 17:21:22,963 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6840182427/log.46676269._081272.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._081272.job
[2025-10-12 13:22:00] 2025-10-12 17:21:22,985 | INFO     | adding to output.list: log.46676269._081272.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/55/7d/log.46676269._081272.job.log.tg
[2025-10-12 13:22:00] 2025-10-12 17:21:22,986 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 13:22:00] 2025-10-12 17:21:22,986 | INFO     | summary of transferred files:
[2025-10-12 13:22:00] 2025-10-12 17:21:22,986 | INFO     |  -- lfn=log.46676269._081272.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 13:22:00] 2025-10-12 17:21:22,986 | INFO     | stage-out finished correctly
[2025-10-12 13:22:00] 2025-10-12 17:21:23,070 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 13:22:00] 2025-10-12 17:21:23,290 | INFO     | time since job start (4301s) is within the limit (172800.0s)
[2025-10-12 13:22:00] 2025-10-12 17:21:24,377 | INFO     | job 6840182427 has state=finished
[2025-10-12 13:22:00] 2025-10-12 17:21:24,377 | INFO     | preparing for final server update for job 6840182427 in state='finished'
[2025-10-12 13:22:00] 2025-10-12 17:21:24,377 | INFO     | this job has now completed (state=finished)
[2025-10-12 13:22:00] 2025-10-12 17:21:24,378 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 13:22:00] 2025-10-12 17:21:24,378 | INFO     | log transfer has been attempted: DONE
[2025-10-12 13:22:00] 2025-10-12 17:21:24,378 | INFO     | job 6840182427 has finished - writing final server update
[2025-10-12 13:22:00] 2025-10-12 17:21:24,378 | INFO     | total number of processed events: 400 (read)
[2025-10-12 13:22:00] 2025-10-12 17:21:24,379 | INFO     | executing command: lscpu
[2025-10-12 13:22:00] 2025-10-12 17:21:24,407 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 13:22:00] 2025-10-12 17:21:25,291 | INFO     | time since job start (4303s) is within the limit (172800.0s)
[2025-10-12 13:22:00] 2025-10-12 17:21:26,408 | INFO     | PID=14606 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 13:22:00] 2025-10-12 17:21:27,409 | INFO     | time since job start (4305s) is within the limit (172800.0s)
[2025-10-12 13:22:00] 2025-10-12 17:21:27,632 | WARNING  | process 21081 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 13:22:00] 2025-10-12 17:21:27,632 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840182427/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:22:00] 2025-10-12 17:21:27,721 | INFO     | number of running child processes to parent process 21081: 1
[2025-10-12 13:22:00] 2025-10-12 17:21:27,721 | INFO     | maximum number of monitored processes: 6
[2025-10-12 13:22:00] 2025-10-12 17:21:29,127 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 13:22:00] 2025-10-12 17:21:29,131 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-10-12 13:22:00] 2025-10-12 17:21:29,134 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6840182427/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:22:00] 2025-10-12 17:21:29,134 | INFO     | extracted standard info from prmon json
[2025-10-12 13:22:00] 2025-10-12 17:21:29,134 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 13:22:00] 2025-10-12 17:21:29,134 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:22:00] 2025-10-12 17:21:29,135 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:22:00] 2025-10-12 17:21:29,135 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:22:00] 2025-10-12 17:21:29,136 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:22:00] 2025-10-12 17:21:29,136 | INFO     | sum of square deviations: 77515872.0
[2025-10-12 13:22:00] 2025-10-12 17:21:29,137 | INFO     | sum of deviations: -5909265931.999999
[2025-10-12 13:22:00] 2025-10-12 17:21:29,137 | INFO     | mean x: 1760287607.0
[2025-10-12 13:22:00] 2025-10-12 17:21:29,137 | INFO     | mean y: 2740637.9682539683
[2025-10-12 13:22:00] 2025-10-12 17:21:29,137 | INFO     | -- intersect: 134194710852.36386
[2025-10-12 13:22:00] 2025-10-12 17:21:29,137 | INFO     | intersect: 134194710852.36386
[2025-10-12 13:22:00] 2025-10-12 17:21:29,137 | INFO     | chi2: 0.05725903975985105
[2025-10-12 13:22:00] 2025-10-12 17:21:29,137 | INFO     | -- intersect: 134194710852.36386
[2025-10-12 13:22:00] 2025-10-12 17:21:29,138 | INFO     | current memory leak: -76.23 B/s (using 63 data points, chi2=0.06)
[2025-10-12 13:22:00] 2025-10-12 17:21:29,138 | INFO     | could have reported an average CPU frequency of 2039 MHz (6 samples)
[2025-10-12 13:22:00] 2025-10-12 17:21:29,138 | INFO     | ..............................
[2025-10-12 13:22:00] 2025-10-12 17:21:29,138 | INFO     | . Timing measurements:
[2025-10-12 13:22:00] 2025-10-12 17:21:29,138 | INFO     | . get job = 0 s
[2025-10-12 13:22:00] 2025-10-12 17:21:29,138 | INFO     | . initial setup = 2 s
[2025-10-12 13:22:00] 2025-10-12 17:21:29,138 | INFO     | . payload setup = 7 s
[2025-10-12 13:22:00] 2025-10-12 17:21:29,139 | INFO     | . stage-in = 0 s
[2025-10-12 13:22:00] 2025-10-12 17:21:29,139 | INFO     | . payload execution = 4272 s
[2025-10-12 13:22:00] 2025-10-12 17:21:29,139 | INFO     | . stage-out = 0 s
[2025-10-12 13:22:00] 2025-10-12 17:21:29,139 | INFO     | . log creation = 0 s
[2025-10-12 13:22:00] 2025-10-12 17:21:29,139 | INFO     | ..............................
[2025-10-12 13:22:00] 2025-10-12 17:21:29,220 | INFO     | 
[2025-10-12 13:22:00] 2025-10-12 17:21:29,220 | INFO     | job summary report
[2025-10-12 13:22:00] 2025-10-12 17:21:29,221 | INFO     | --------------------------------------------------
[2025-10-12 13:22:00] 2025-10-12 17:21:29,221 | INFO     | PanDA job id: 6840182427
[2025-10-12 13:22:00] 2025-10-12 17:21:29,221 | INFO     | task id: 46676269
[2025-10-12 13:22:00] 2025-10-12 17:21:29,221 | INFO     | errors: (none)
[2025-10-12 13:22:00] 2025-10-12 17:21:29,221 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:22:00] 2025-10-12 17:21:29,221 | INFO     | pilot state: finished 
[2025-10-12 13:22:00] 2025-10-12 17:21:29,222 | INFO     | transexitcode: 0
[2025-10-12 13:22:00] 2025-10-12 17:21:29,222 | INFO     | exeerrorcode: 0
[2025-10-12 13:22:00] 2025-10-12 17:21:29,222 | INFO     | exeerrordiag: 
[2025-10-12 13:22:00] 2025-10-12 17:21:29,222 | INFO     | exitcode: 0
[2025-10-12 13:22:00] 2025-10-12 17:21:29,222 | INFO     | exitmsg: OK
[2025-10-12 13:22:00] 2025-10-12 17:21:29,222 | INFO     | cpuconsumptiontime: 46041 s
[2025-10-12 13:22:00] 2025-10-12 17:21:29,223 | INFO     | nevents: 400
[2025-10-12 13:22:00] 2025-10-12 17:21:29,223 | INFO     | neventsw: 0
[2025-10-12 13:22:00] 2025-10-12 17:21:29,223 | INFO     | pid: 21081
[2025-10-12 13:22:00] 2025-10-12 17:21:29,223 | INFO     | pgrp: 21081
[2025-10-12 13:22:00] 2025-10-12 17:21:29,223 | INFO     | corecount: 12
[2025-10-12 13:22:00] 2025-10-12 17:21:29,223 | INFO     | event service: False
[2025-10-12 13:22:00] 2025-10-12 17:21:29,223 | INFO     | sizes: {0: 2348029, 1: 2348885, 6: 2349147, 12: 2349175, 4283: 2375196, 4285: 2384378, 4291: 2384516}
[2025-10-12 13:22:00] 2025-10-12 17:21:29,223 | INFO     | --------------------------------------------------
[2025-10-12 13:22:00] 2025-10-12 17:21:29,223 | INFO     | 
[2025-10-12 13:22:00] 2025-10-12 17:21:29,224 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 13:22:00] 2025-10-12 17:21:29,247 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:22:00] 2025-10-12 17:21:29,248 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:22:00] 2025-10-12 17:21:29,248 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:22:00] 2025-10-12 17:21:29,248 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:22:00] 2025-10-12 17:21:29,248 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:22:00] 2025-10-12 17:21:29,248 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:22:00] 2025-10-12 17:21:29,249 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:22:00] 2025-10-12 17:21:29,249 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:22:00] 2025-10-12 17:21:29,249 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:22:00] 2025-10-12 17:21:29,249 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:22:00] 2025-10-12 17:21:29,249 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:22:00] 2025-10-12 17:21:29,249 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:22:00] 2025-10-12 17:21:29,250 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:22:00] 2025-10-12 17:21:29,250 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:22:00] 2025-10-12 17:21:29,250 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:22:00] 2025-10-12 17:21:29,250 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:22:00] 2025-10-12 17:21:29,250 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:22:00] 2025-10-12 17:21:29,250 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:22:00] 2025-10-12 17:21:29,251 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:22:00] 2025-10-12 17:21:29,251 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:22:00] 2025-10-12 17:21:29,251 | INFO     | job 6840182427 has completed (purged errors)
[2025-10-12 13:22:00] 2025-10-12 17:21:29,251 | INFO     | overall cleanup function is called
[2025-10-12 13:22:00] 2025-10-12 17:21:30,259 | INFO     | --- collectZombieJob: --- 10, [21081]
[2025-10-12 13:22:00] 2025-10-12 17:21:30,259 | INFO     | zombie collector waiting for pid 21081
[2025-10-12 13:22:00] 2025-10-12 17:21:30,259 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:22:00] 2025-10-12 17:21:30,259 | INFO     | collected zombie processes
[2025-10-12 13:22:00] 2025-10-12 17:21:30,259 | INFO     | will attempt to kill all subprocesses of pid=21081
[2025-10-12 13:22:00] 2025-10-12 17:21:30,352 | INFO     | process IDs to be killed: [21081] (in reverse order)
[2025-10-12 13:22:00] 2025-10-12 17:21:30,404 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:22:00] 2025-10-12 17:21:30,405 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:22:00] 2025-10-12 17:21:30,409 | INFO     | did not find any defunct processes belonging to 21081
[2025-10-12 13:22:00] 2025-10-12 17:21:30,412 | INFO     | did not find any defunct processes belonging to 21081
[2025-10-12 13:22:00] 2025-10-12 17:21:30,412 | INFO     | ready for new job
[2025-10-12 13:22:00] 2025-10-12 17:21:30,412 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:22:00] 2025-10-12 17:21:30,414 | INFO     | ***************************************
[2025-10-12 13:22:00] 2025-10-12 17:21:30,414 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:22:00] 2025-10-12 17:21:30,414 | INFO     | ***************************************
[2025-10-12 13:22:00] 2025-10-12 17:21:30,414 | INFO     | 
[2025-10-12 13:22:00] 2025-10-12 17:21:30,415 | INFO     | architecture information:
[2025-10-12 13:22:00] 2025-10-12 17:21:30,415 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:22:00] 2025-10-12 17:21:30,430 | INFO     | cat /etc/os-release:
[2025-10-12 13:22:00] NAME="CentOS Linux"
[2025-10-12 13:22:00] VERSION="7 (Core)"
[2025-10-12 13:22:00] ID="centos"
[2025-10-12 13:22:00] ID_LIKE="rhel fedora"
[2025-10-12 13:22:00] VERSION_ID="7"
[2025-10-12 13:22:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:22:00] ANSI_COLOR="0;31"
[2025-10-12 13:22:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:22:00] HOME_URL="https://www.centos.org/"
[2025-10-12 13:22:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:22:00] 
[2025-10-12 13:22:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:22:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:22:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:22:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:22:00] 
[2025-10-12 13:22:00] 2025-10-12 17:21:30,431 | INFO     | ***************************************
[2025-10-12 13:22:00] 2025-10-12 17:21:30,934 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 13:22:00] 2025-10-12 17:21:30,950 | INFO     | sufficient remaining disk space (29369565184 B)
[2025-10-12 13:22:00] 2025-10-12 17:21:31,033 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:22:00] 2025-10-12 17:21:31,033 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:22:00] 2025-10-12 17:21:31,034 | INFO     | update_server=False
[2025-10-12 13:22:00] 2025-10-12 17:21:31,034 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:22:00] 2025-10-12 17:21:31,034 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:22:00] 2025-10-12 17:21:31,081 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:22:00] 2025-10-12 17:21:31,093 | INFO     | all job control threads have been joined
[2025-10-12 13:22:00] 2025-10-12 17:21:31,229 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:22:00] 2025-10-12 17:21:31,229 | INFO     | aborting loop
[2025-10-12 13:22:00] 2025-10-12 17:21:31,404 | INFO     | all data control threads have been joined
[2025-10-12 13:22:00] 2025-10-12 17:21:31,714 | INFO     | all payload control threads have been joined
[2025-10-12 13:22:00] 2025-10-12 17:21:32,039 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:22:00] 2025-10-12 17:21:32,040 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:22:00] 2025-10-12 17:21:32,099 | INFO     | [job] control thread has finished
[2025-10-12 13:22:00] 2025-10-12 17:21:32,235 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:22:00] 2025-10-12 17:21:32,311 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:22:00] 2025-10-12 17:21:32,409 | INFO     | [data] control thread has finished
[2025-10-12 13:22:00] 2025-10-12 17:21:32,422 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:22:00] 2025-10-12 17:21:32,429 | INFO     | [job] validate thread has finished
[2025-10-12 13:22:00] 2025-10-12 17:21:32,719 | INFO     | [payload] control thread has finished
[2025-10-12 13:22:00] 2025-10-12 17:21:32,728 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:22:00] 2025-10-12 17:21:33,028 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:22:00] 2025-10-12 17:21:33,085 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:22:00] 2025-10-12 17:21:33,234 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:22:00] 2025-10-12 17:21:33,517 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:22:00] 2025-10-12 17:21:33,667 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:22:00] 2025-10-12 17:21:37,673 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:22:00] 2025-10-12 17:21:41,611 | INFO     | job.realtimelogging is not enabled
[2025-10-12 13:22:00] 2025-10-12 17:21:42,616 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:22:00] 2025-10-12 17:21:48,582 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:22:00] 2025-10-12 17:21:50,535 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139776438695744)>', '<ExcThread(monitor, started 139775986087680)>']
[2025-10-12 13:22:00] 2025-10-12 17:21:55,551 | INFO     | all workflow threads have been joined
[2025-10-12 13:22:00] 2025-10-12 17:21:55,551 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:22:00] 2025-10-12 17:21:55,551 | INFO     | traces error code: 0
[2025-10-12 13:22:00] 2025-10-12 17:21:55,551 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:22:00] 2025-10-12 17:22:00,610 | INFO     | PID=14606 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 13:22:00] 2025-10-12 17:22:00,619 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:22:00] 2025-10-12 17:22:00,619 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:22:00] 2025-10-12 17:22:00,619 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:22:00] 2025-10-12 17:22:00,619 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:22:00] 2025-10-12 17:22:00,620 | INFO     | [monitor] control thread has ended
[2025-10-12 13:22:00] 2025-10-12 17:22:00,710 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:22:00] 2025-10-12 17:22:00,714 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:22:00] 2025-10-12 17:22:00,718 [wrapper] pilotpid: 14606
[2025-10-12 13:22:00] 2025-10-12 17:22:00,721 [wrapper] Pilot exit status: 0
[2025-10-12 13:22:00] 2025-10-12 17:22:00,737 [wrapper] pandaids: 6840182427
[2025-10-12 13:22:00] 2025-10-12 17:22:00,779 [wrapper] cleanup supervisor_pilot 25887 14607
[2025-10-12 13:22:00] 2025-10-12 17:22:00,783 [wrapper] Test setup, not cleaning
[2025-10-12 13:22:00] 2025-10-12 17:22:00,787 [wrapper] apfmon messages muted
[2025-10-12 13:22:00] 2025-10-12 17:22:00,791 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:22:00] 2025-10-12 17:22:00,795 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:22:00]  *** Error codes and diagnostics ***
[2025-10-12 13:22:00]     "exeErrorCode": 0,
[2025-10-12 13:22:00]     "exeErrorDiag": "",
[2025-10-12 13:22:00]     "pilotErrorCode": 0,
[2025-10-12 13:22:00]     "pilotErrorDiag": "",
[2025-10-12 13:22:00]  *** Listing of results directory ***
[2025-10-12 13:22:00] total 408236
[2025-10-12 13:22:00] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 10:30 pilot3.tar.gz
[2025-10-12 13:22:00] -rwx------ 1 boincer umatlas     36292 Oct 12 10:47 runpilot2-wrapper.sh
[2025-10-12 13:22:00] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 10:47 queuedata.json
[2025-10-12 13:22:00] -rw-r--r-- 1 boincer umatlas       100 Oct 12 12:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:22:00] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 12:09 run_atlas
[2025-10-12 13:22:00] -rw-r--r-- 1 boincer umatlas       105 Oct 12 12:09 job.xml
[2025-10-12 13:22:00] -rw-r--r-- 2 boincer umatlas 219324058 Oct 12 12:09 EVNT.46676267._004536.pool.root.1
[2025-10-12 13:22:00] drwxrwx--x 2 boincer umatlas      4096 Oct 12 12:09 shared
[2025-10-12 13:22:00] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 12:09 input.tar.gz
[2025-10-12 13:22:00] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:09 start_atlas.sh
[2025-10-12 13:22:00] -rw-r--r-- 1 boincer umatlas         0 Oct 12 12:09 boinc_lockfile
[2025-10-12 13:22:00] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 12:09 pandaJob.out
[2025-10-12 13:22:00] -rw------- 1 boincer umatlas    975528 Oct 12 12:09 agis_schedconf.cvmfs.json
[2025-10-12 13:22:00] -rw------- 1 boincer umatlas   1560580 Oct 12 12:09 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:22:00] drwx------ 5 boincer umatlas      4096 Oct 12 12:09 pilot3
[2025-10-12 13:22:00] -rw------- 1 boincer umatlas 192797948 Oct 12 13:20 HITS.46676269._081272.pool.root.1
[2025-10-12 13:22:00] -rw-r--r-- 1 boincer umatlas       529 Oct 12 13:20 boinc_task_state.xml
[2025-10-12 13:22:00] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 13:21 init_data.xml
[2025-10-12 13:22:00] -rw------- 1 boincer umatlas      1049 Oct 12 13:21 memory_monitor_summary.json
[2025-10-12 13:22:00] -rw------- 1 boincer umatlas    379368 Oct 12 13:21 log.46676269._081272.job.log.tgz.1
[2025-10-12 13:22:00] -rw-r--r-- 1 boincer umatlas        27 Oct 12 13:21 wrapper_checkpoint.txt
[2025-10-12 13:22:00] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 13:21 boinc_mmap_file
[2025-10-12 13:22:00] -rw------- 1 boincer umatlas      7858 Oct 12 13:21 heartbeat.json
[2025-10-12 13:22:00] -rw------- 1 boincer umatlas        95 Oct 12 13:22 pilot_heartbeat.json
[2025-10-12 13:22:00] -rw------- 1 boincer umatlas       745 Oct 12 13:22 pilotlog.txt
[2025-10-12 13:22:00] -rw------- 1 boincer umatlas    626805 Oct 12 13:22 log.46676269._081272.job.log.1
[2025-10-12 13:22:00] -rw------- 1 boincer umatlas       357 Oct 12 13:22 output.list
[2025-10-12 13:22:00] -rw-r--r-- 1 boincer umatlas       620 Oct 12 13:22 runtime_log
[2025-10-12 13:22:00] -rw------- 1 boincer umatlas   1024000 Oct 12 13:22 result.tar.gz
[2025-10-12 13:22:00] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 13:22 runtime_log.err
[2025-10-12 13:22:00] -rw------- 1 boincer umatlas       659 Oct 12 13:22 444LDmPXCS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmSJkNDmQ8ceVm.diag
[2025-10-12 13:22:00] -rw-r--r-- 1 boincer umatlas     21848 Oct 12 13:22 stderr.txt
[2025-10-12 13:22:00] HITS file was successfully produced:
[2025-10-12 13:22:00] -rw------- 1 boincer umatlas 192797948 Oct 12 13:20 shared/HITS.pool.root.1
[2025-10-12 13:22:00]  *** Contents of shared directory: ***
[2025-10-12 13:22:00] total 404048
[2025-10-12 13:22:00] -rw-r--r-- 2 boincer umatlas 219324058 Oct 12 12:09 ATLAS.root_0
[2025-10-12 13:22:00] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 12:09 input.tar.gz
[2025-10-12 13:22:00] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 12:09 start_atlas.sh
[2025-10-12 13:22:00] -rw------- 1 boincer umatlas 192797948 Oct 12 13:20 HITS.pool.root.1
[2025-10-12 13:22:00] -rw------- 1 boincer umatlas   1024000 Oct 12 13:22 result.tar.gz
13:22:02 (10347): run_atlas exited; CPU time 46007.921024
13:22:02 (10347): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN